Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 1.2e-58 229.6 113 100.0
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 2.8e-39 165.2 119 76.5
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 1.1e-38 163.3 124 72.6
Duzib160G0057 Durio zibethinus HOM05D004022 ORTHO05D004090 6.5e-36 154.1 117 72.6
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.9e-35 152.5 111 73.9
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 4.2e-35 151.4 111 73.0
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 9.5e-35 150.2 122 70.5
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 9.5e-35 150.2 111 73.0
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.8e-30 136.0 118 61.9
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.8e-30 136.0 118 61.9
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 4.1e-30 134.8 118 61.9
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 2.5e-27 125.6 116 59.5
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 3.6e-26 121.7 107 57.0
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 6.8e-25 117.5 106 63.2
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 1.7e-23 112.8 110 54.5
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 2.4e-22 109.0 111 53.2
CiPaw.10G091400 Carya illinoinensis HOM05D004022 ORTHO05D004090 9.2e-22 107.1 118 55.9
Ciclev10017188m.g Citrus clementina HOM05D004022 ORTHO05D004090 3.9e-20 101.7 116 52.6
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 6.6e-20 100.9 107 51.4
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 8.0e-18 94.0 98 51.0
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 2.6e-16 89.0 98 53.1
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.7e-15 86.3 107 46.7
Cpa.g.sc17.10 Carica papaya HOM05D004022 ORTHO05D004090 8.3e-15 84.0 116 47.4
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.4e-14 83.2 109 48.6
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 7.8e-13 77.4 107 46.7
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 1.7e-12 76.3 125 40.0
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 3.0e-12 75.5 100 46.0
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 3.9e-12 75.1 100 46.0
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 5.0e-12 74.7 100 45.0
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 6.6e-12 74.3 132 34.8
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 8.6e-12 73.9 100 44.0
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 8.6e-12 73.9 105 41.9
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.5e-11 73.2 113 44.2
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.5e-11 72.4 106 45.3
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.3e-11 72.0 103 42.7
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 3.3e-11 72.0 103 42.7
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 4.3e-11 71.6 97 45.4
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 4.3e-11 71.6 123 35.0
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 4.3e-11 71.6 112 41.1
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 9.5e-11 70.5 100 46.0
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 9.5e-11 70.5 100 45.0
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 1.2e-10 70.1 107 43.0
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 1.2e-10 70.1 99 42.4
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 1.2e-10 70.1 109 43.1
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 2.1e-10 69.3 107 40.2
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 2.1e-10 69.3 113 44.2
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 2.8e-10 68.9 100 45.0
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 2.8e-10 68.9 113 42.5
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 2.8e-10 68.9 112 40.2
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 4.7e-10 68.2 103 43.7
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 4.7e-10 68.2 119 32.8
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 6.2e-10 67.8 119 33.6
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 6.2e-10 67.8 113 40.7
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 6.2e-10 67.8 108 37.0
MBI07_g23436_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 6.2e-10 67.8 114 38.6
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 8.1e-10 67.4 116 40.5
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.1e-09 67.0 103 42.7
Sed0018028 Sechium edule HOM05D024889 ORTHO05D004090 1.1e-09 67.0 104 40.4
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.4e-09 66.6 119 33.6
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.8e-09 66.2 106 40.6
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 1.8e-09 66.2 113 40.7
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 1.8e-09 66.2 127 34.6
TWI09G1243 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 3.1e-09 65.5 98 45.9
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 4.0e-09 65.1 102 42.2
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 4.0e-09 65.1 119 32.8
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 5.2e-09 64.7 98 39.8
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 5.2e-09 64.7 96 40.6
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 6.8e-09 64.3 105 41.0
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 6.8e-09 64.3 96 38.5
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 6.8e-09 64.3 107 40.2
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 8.9e-09 63.9 103 43.7
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 8.9e-09 63.9 102 42.2
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 8.9e-09 63.9 109 38.5
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 8.9e-09 63.9 101 39.6
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 1.2e-08 63.5 91 42.9
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 1.2e-08 63.5 108 38.0
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 1.2e-08 63.5 105 41.0
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.5e-08 63.2 111 40.5
Lalb_Chr20g0117911 Lupinus albus HOM05D012904 ORTHO05D004090 1.5e-08 63.2 98 35.7
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.5e-08 63.2 112 38.4
Psat1g188880 Pisum sativum HOM05D012904 ORTHO05D004090 1.5e-08 63.2 100 34.0
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 1.5e-08 63.2 108 41.7
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 2.6e-08 62.4 114 36.8
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 2.6e-08 62.4 99 37.4
Lj4g0014771 Lotus japonicus HOM05D012904 ORTHO05D004090 3.4e-08 62.0 102 38.2
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 3.4e-08 62.0 102 38.2
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 4.4e-08 61.6 115 36.5
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 5.8e-08 61.2 98 38.8
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 7.5e-08 60.8 105 41.0
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 9.9e-08 60.5 105 41.0
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 9.9e-08 60.5 106 42.5
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 9.9e-08 60.5 106 42.5
Nn3g20788 Nelumbo nucifera HOM05D004022 ORTHO05D004090 9.9e-08 60.5 100 39.0
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 1.3e-07 60.1 106 42.5
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 1.3e-07 60.1 106 42.5
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 1.3e-07 60.1 106 42.5
FvH4_3g16620 Fragaria vesca HOM05D004022 ORTHO05D004090 1.3e-07 60.1 109 34.9
Lalb_Chr13g0293851 Lupinus albus HOM05D012904 ORTHO05D004090 1.3e-07 60.1 106 38.7
Rhsim13G0113700 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.3e-07 60.1 47 70.2
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 1.7e-07 59.7 108 40.7
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 1.7e-07 59.7 105 41.0
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 1.7e-07 59.7 111 36.9
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 1.7e-07 59.7 95 37.9
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 1.7e-07 59.7 108 36.1
Medtr2g019320 Medicago truncatula HOM05D012904 ORTHO05D004090 1.7e-07 59.7 105 38.1
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 2.2e-07 59.3 103 40.8
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 2.2e-07 59.3 105 41.9
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 2.9e-07 58.9 108 38.9
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 2.9e-07 58.9 103 39.8
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 2.9e-07 58.9 103 39.8
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 2.9e-07 58.9 103 39.8
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 2.9e-07 58.9 95 38.9
Phvul.006G165200 Phaseolus vulgaris HOM05D012904 ORTHO05D004090 2.9e-07 58.9 107 33.6
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 3.7e-07 58.5 105 39.0
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 3.7e-07 58.5 99 36.4
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 4.9e-07 58.2 96 37.5
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 6.4e-07 57.8 110 37.3
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 6.4e-07 57.8 95 41.1
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 6.4e-07 57.8 95 41.1
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 6.4e-07 57.8 94 42.6
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 6.4e-07 57.8 105 38.1
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 6.4e-07 57.8 114 35.1
PGR083G2833 Punica granatum HOM05D004022 ORTHO05D336655 6.4e-07 57.8 52 63.5
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 6.4e-07 57.8 96 36.5
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 8.3e-07 57.4 111 36.9
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 8.3e-07 57.4 105 39.0
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 1.1e-06 57.0 104 38.5
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 1.1e-06 57.0 104 38.5
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.1e-06 57.0 111 34.2
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 1.1e-06 57.0 103 37.9
TPR.G26259 Trifolium pratense HOM05D012904 ORTHO05D004090 1.1e-06 57.0 99 31.3
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 1.4e-06 56.6 109 40.4
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 1.4e-06 56.6 109 40.4
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 1.4e-06 56.6 110 37.3
ClCG01G024660 Citrullus lanatus HOM05D024889 ORTHO05D004090 1.4e-06 56.6 105 37.1
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 1.4e-06 56.6 106 37.7
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 1.4e-06 56.6 110 37.3
VMungo0540G1629 Vigna mungo HOM05D012904 ORTHO05D004090 1.4e-06 56.6 120 33.3
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 1.9e-06 56.2 109 38.5
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 1.9e-06 56.2 109 38.5
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 2.4e-06 55.8 109 37.6
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 2.4e-06 55.8 109 37.6
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 3.2e-06 55.5 107 36.4
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 3.2e-06 55.5 102 40.2
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 4.1e-06 55.1 107 38.3
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 4.1e-06 55.1 100 40.0
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 4.1e-06 55.1 111 34.2
Sc08g0000960 Simmondsia chinensis HOM05D004022 ORTHO05D004090 5.4e-06 54.7 40 62.5
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 9.2e-06 53.9 103 38.8
DCAR_013798 Daucus carota HOM05D057188 ORTHO05D004090 9.2e-06 53.9 95 36.8


User provided reference genes

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