Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 4.5e-191 671.0 316 100.0
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 7.4e-154 547.4 332 80.7
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 7.0e-152 540.8 314 81.2
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 4.5e-151 538.1 314 81.2
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 4.5e-151 538.1 314 80.6
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 6.1e-140 501.1 314 74.8
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 4.1e-136 488.4 319 72.4
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 1.6e-135 486.5 321 71.7
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 2.7e-132 475.7 317 71.6
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 2.2e-129 466.1 354 65.0
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 7.7e-127 457.6 321 68.5
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 3.8e-126 455.3 314 71.3
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 7.2e-125 451.1 318 69.2
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 1.6e-124 449.9 316 69.9
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 4.7e-124 448.4 314 68.5
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.0e-123 447.2 316 68.0
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 1.4e-123 446.8 317 68.1
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 1.8e-123 446.4 316 68.0
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 6.8e-123 444.5 316 68.0
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 6.8e-123 444.5 316 67.7
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 2.6e-122 442.6 314 65.3
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 4.4e-122 441.8 317 68.5
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 5.7e-122 441.4 323 65.9
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 5.7e-122 441.4 314 68.2
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 5.7e-122 441.4 315 66.0
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 7.5e-122 441.0 319 65.8
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 2.2e-121 439.5 314 65.6
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 1.1e-120 437.2 320 65.0
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.8e-120 436.4 317 67.5
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 9.2e-120 434.1 316 65.8
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 9.2e-120 434.1 319 64.9
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 7.8e-119 431.0 317 65.6
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 2.3e-118 429.5 316 65.8
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 2.3e-118 429.5 317 65.3
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 2.3e-118 429.5 320 65.3
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 2.3e-118 429.5 321 62.9
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 2.9e-118 429.1 320 65.0
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 1.9e-117 426.4 319 64.9
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 2.5e-117 426.0 319 63.0
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 4.3e-117 425.2 322 64.3
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 4.3e-117 425.2 316 64.6
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 1.2e-116 423.7 316 63.3
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 2.8e-116 422.5 316 64.2
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 2.8e-116 422.5 316 64.9
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 3.6e-116 422.2 316 64.6
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 8.0e-116 421.0 316 63.3
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 1.8e-115 419.9 324 63.0
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 1.8e-115 419.9 317 65.9
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 3.1e-115 419.1 314 64.3
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 4.0e-115 418.7 316 64.6
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 6.8e-115 417.9 314 64.0
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 8.9e-115 417.5 316 64.2
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 1.2e-114 417.2 319 65.2
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 1.5e-114 416.8 321 62.9
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 2.6e-114 416.0 314 63.4
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 9.8e-114 414.1 314 64.0
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 9.8e-114 414.1 321 64.2
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 2.9e-113 412.5 322 62.7
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 8.3e-113 411.0 321 63.6
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 2.4e-112 409.5 319 60.8
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 4.1e-112 408.7 319 63.6
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.2e-111 407.1 314 62.4
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 1.6e-111 406.8 315 62.2
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 1.6e-111 406.8 324 62.0
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 6.0e-111 404.8 319 60.8
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 1.3e-110 403.7 319 60.5
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.3e-110 403.7 272 73.2
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 3.9e-110 402.1 327 60.6
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 3.9e-110 402.1 316 59.8
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 6.6e-110 401.4 318 61.6
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 3.6e-108 395.6 320 60.9
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 5.8e-106 388.3 319 60.8
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 9.8e-106 387.5 367 54.2
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 6.0e-103 378.3 325 57.5
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 1.0e-102 377.5 316 59.8
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 1.3e-102 377.1 320 58.8
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 1.3e-102 377.1 325 57.2
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 8.6e-102 374.4 316 56.0
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 1.9e-101 373.2 314 59.2
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 4.3e-101 372.1 272 62.5
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 4.0e-99 365.5 253 69.2
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 3.4e-98 362.5 316 58.2
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 4.9e-97 358.6 238 73.5
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 1.3e-94 350.5 320 55.6
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.1e-93 347.4 322 55.0
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.9e-93 346.7 224 70.1
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 2.5e-93 346.3 332 53.3
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 1.6e-92 343.6 237 71.3
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 2.8e-92 342.8 329 51.1
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 2.0e-90 336.7 328 53.4
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 2.6e-90 336.3 332 54.5
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 3.4e-90 335.9 316 56.0
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.3e-89 334.0 237 69.2
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 2.4e-83 313.2 211 68.2
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 9.0e-83 311.2 316 51.6
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 6.0e-79 298.5 211 67.3
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 5.1e-78 295.4 329 49.2
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 8.7e-78 294.7 320 46.9
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 1.1e-77 294.3 314 48.7
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 1.3e-76 290.8 314 47.8
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 5.3e-75 285.4 317 49.5
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 3.8e-73 279.3 186 66.7
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 3.2e-72 276.2 250 53.6
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 4.2e-72 275.8 314 47.1
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 1.6e-68 263.8 236 54.7
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 3.7e-68 262.7 248 55.2
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 3.2e-64 249.6 156 73.1
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 5.7e-61 238.8 174 67.8
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.3e-60 237.7 172 70.9
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 6.9e-59 231.9 225 49.3
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 4.2e-56 222.6 317 41.3
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 1.1e-53 214.5 171 62.0
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 1.2e-50 204.5 130 71.5
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 4.5e-50 202.6 144 63.2
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.8e-46 190.7 223 45.7
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 2.4e-43 180.3 144 63.2
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 6.9e-43 178.7 145 57.2
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 1.4e-40 171.0 289 37.0
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 1.8e-38 164.1 325 35.7
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 7.4e-37 158.7 441 29.0
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 2.2e-36 157.1 236 39.4
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 1.0e-33 148.3 97 68.0
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 8.8e-30 135.2 170 44.1
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 4.0e-22 109.8 61 78.7
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 2.2e-20 104.0 53 90.6
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 4.5e-18 96.3 67 59.7
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 2.1e-15 87.4 51 76.5
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 4.7e-15 86.3 58 62.1
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 1.3e-12 78.2 43 76.7
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 3.1e-11 73.6 47 63.8
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 4.2e-08 63.2 31 87.1
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 2.8e-07 60.5 43 62.8
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 6.1e-07 59.3 31 83.9
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 5.2e-06 56.2 36 63.9
Cfa025678 Carpinus fangiana HOM05D005657 ORTHO05D122708 6.8e-06 55.8 175 29.1


User provided reference genes

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