Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G148300 Theobroma cacao HOM05D007074 ORTHO05D008542 1.1e-140 503.4 274 100.0
Duzib235G1065 Durio zibethinus HOM05D007074 ORTHO05D008542 1.9e-68 263.5 276 64.9
Gohir.A05G147500 Gossypium hirsutum HOM05D007074 ORTHO05D008542 8.6e-66 254.6 294 60.5
Gorai.009G154100 Gossypium raimondii HOM05D007074 ORTHO05D008542 7.3e-65 251.5 289 60.9
Gohir.D05G150000 Gossypium hirsutum HOM05D007074 ORTHO05D008542 1.6e-64 250.4 289 60.6
COL.COLO4_31042 Corchorus olitorius HOM05D007074 ORTHO05D008542 1.9e-60 236.9 257 63.0
QL05p057294 Quercus lobata HOM05D007074 ORTHO05D008542 2.2e-53 213.4 260 54.2
MD05G1281700 Malus domestica HOM05D007074 ORTHO05D008542 3.4e-46 189.5 266 50.8
Gorai.010G167100 Gossypium raimondii HOM05D007074 ORTHO05D008542 7.1e-44 181.8 272 50.0
Prupe.4G082900 Prunus persica HOM05D007074 ORTHO05D008542 2.7e-43 179.9 279 48.7
MD10G1260500 Malus domestica HOM05D007074 ORTHO05D008542 1.5e-41 174.1 266 47.7
Gohir.A06G138601 Gossypium hirsutum HOM05D007074 ORTHO05D008542 1.2e-38 164.5 250 49.6
Hma1.2p1_0020F.1_g014170 Hydrangea macrophylla HOM05D007074 ORTHO05D008542 1.2e-38 164.5 239 50.6
CiPaw.10G090600 Carya illinoinensis HOM05D007074 ORTHO05D008542 3.4e-38 162.9 261 46.0
Cfa000927 Carpinus fangiana HOM05D007074 ORTHO05D008542 5.8e-38 162.2 276 48.2
Gohir.D06G143401 Gossypium hirsutum HOM05D007074 ORTHO05D008542 5.8e-38 162.2 250 49.6
Lalb_Chr20g0117821 Lupinus albus HOM05D007074 ORTHO05D008542 6.4e-37 158.7 296 41.9
Glyma.13G219300 Glycine max HOM05D007074 ORTHO05D008542 2.4e-36 156.8 251 45.8
Glyma.15G092900 Glycine max HOM05D007074 ORTHO05D008542 1.2e-35 154.5 251 46.2
Manes.17G071900 Manihot esculenta HOM05D007074 ORTHO05D008542 1.2e-35 154.5 252 43.7
Ciclev10017572m.g Citrus clementina HOM05D007074 ORTHO05D008542 1.6e-35 154.1 262 47.3
CiPaw.09G122000 Carya illinoinensis HOM05D007074 ORTHO05D008542 6.0e-35 152.1 265 42.6
Gorai.011G045600 Gossypium raimondii HOM05D007074 ORTHO05D008542 6.0e-35 152.1 277 43.3
Gohir.D10G043000 Gossypium hirsutum HOM05D007074 ORTHO05D008542 3.0e-34 149.8 277 43.0
Gohir.A10G042100 Gossypium hirsutum HOM05D007074 ORTHO05D008542 1.1e-33 147.9 277 41.9
Manes.15G123200 Manihot esculenta HOM05D007074 ORTHO05D008542 1.1e-33 147.9 273 41.4
TPR.G26250 Trifolium pratense HOM05D007074 ORTHO05D008542 1.9e-33 147.1 274 42.0
TWI53G1156 Tripterygium wilfordii HOM05D007074 ORTHO05D008542 2.5e-33 146.7 244 46.7
Phvul.006G166000 Phaseolus vulgaris HOM05D007074 ORTHO05D008542 5.6e-33 145.6 251 46.6
Medtr2g019160 Medicago truncatula HOM05D007074 ORTHO05D008542 3.1e-31 139.8 280 42.5
Psat1g191160 Pisum sativum HOM05D007074 ORTHO05D008542 5.3e-31 139.0 269 41.6
Psat1g191080 Pisum sativum HOM05D007074 ORTHO05D008542 6.9e-31 138.7 272 41.2
Dinv05217 Davidia involucrata HOM05D007074 ORTHO05D008542 1.7e-29 134.0 148 56.8
Nn4g26598 Nelumbo nucifera HOM05D007074 ORTHO05D008542 4.2e-28 129.4 260 41.2
Nn3g20397 Nelumbo nucifera HOM05D007074 ORTHO05D008542 1.2e-27 127.9 271 40.2
FAN21G0051 Fragaria x ananassa HOM05D007074 ORTHO05D008542 2.1e-27 127.1 260 42.7
Potri.004G065300 Populus trichocarpa HOM05D007074 ORTHO05D008542 1.3e-26 124.4 265 41.1
Atru.chr10.1177 Acer truncatum HOM05D007074 ORTHO05D008542 2.3e-26 123.6 250 41.6
FAN16G0984 Fragaria x ananassa HOM05D007074 ORTHO05D008542 3.9e-26 122.9 257 44.7
Oeu034132.1 Olea europaea HOM05D007074 ORTHO05D008542 5.1e-26 122.5 282 37.9
FAN25G3808 Fragaria x ananassa HOM05D007074 ORTHO05D008542 6.7e-26 122.1 257 44.4
TWI73G0984 Tripterygium wilfordii HOM05D007074 ORTHO05D008542 2.5e-25 120.2 249 43.0
Lj6g0018330 Lotus japonicus HOM05D007074 ORTHO05D008542 5.7e-25 119.0 255 41.2
Eucgr.E02421 Eucalyptus grandis HOM05D007074 ORTHO05D008542 2.8e-24 116.7 264 37.9
THA.LOC104814307 Tarenaya hassleriana HOM05D007074 ORTHO05D008542 6.3e-24 115.5 292 38.4
Glyma.08G097500 Glycine max HOM05D007074 ORTHO05D008542 2.4e-23 113.6 255 36.5
Aa31LG10G6790 Aethionema arabicum HOM05D007074 ORTHO05D008542 3.4e-22 109.8 259 39.4
PGR031G2887 Punica granatum HOM05D007074 ORTHO05D008542 3.4e-22 109.8 254 35.8
FvH4_3g05300 Fragaria vesca HOM05D007074 ORTHO05D008542 7.6e-22 108.6 241 41.1
A04p26510 Brassica napus HOM05D007074 ORTHO05D008542 1.3e-21 107.8 285 35.1
C04p63930 Brassica napus HOM05D007074 ORTHO05D008542 1.3e-21 107.8 285 35.1
arahy.Tifrunner.gnm1.ann1.0G1Q0G Arachis hypogaea HOM05D007074 ORTHO05D008542 1.7e-21 107.5 260 35.8
BcaB06g28786 Brassica carinata HOM05D007074 ORTHO05D008542 5.0e-21 105.9 279 36.9
SGA_v2.0_scaffold1478G53958 Striga asiatica HOM05D007074 ORTHO05D008542 8.5e-21 105.1 271 36.2
SGA_v2.0_scaffold1G00191 Striga asiatica HOM05D007074 ORTHO05D008542 8.5e-21 105.1 271 36.2
VMungo0540G2047 Vigna mungo HOM05D007074 ORTHO05D008542 1.4e-20 104.4 198 41.4
Migut.M00897 Erythranthe guttata HOM05D007074 ORTHO05D008542 3.2e-20 103.2 265 35.8
BraA04t18155Z Brassica rapa HOM05D007074 ORTHO05D008542 4.2e-20 102.8 285 34.0
BolC4t27860H Brassica oleracea HOM05D007074 ORTHO05D008542 5.5e-20 102.4 260 35.0
Sp1g26010 Schrenkiella parvula HOM05D007074 ORTHO05D008542 7.2e-20 102.1 274 37.2
CARHR029240 Cardamine hirsuta HOM05D007074 ORTHO05D008542 1.2e-19 101.3 278 35.6
Carub.0001s2842 Capsella rubella HOM05D007074 ORTHO05D008542 1.6e-19 100.9 294 34.7
Thhalv10017803m.g Eutrema salsugineum HOM05D007074 ORTHO05D008542 1.6e-19 100.9 269 34.6
arahy.Tifrunner.gnm1.ann1.4BL86F Arachis hypogaea HOM05D007074 ORTHO05D008542 2.1e-19 100.5 213 42.7
AL1G44090 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 2.7e-19 100.1 284 37.0
AL700U10010 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 2.7e-19 100.1 284 37.0
Potri.011G083600 Populus trichocarpa HOM05D007074 ORTHO05D008542 2.7e-19 100.1 274 36.9
Thhalv10008361m.g Eutrema salsugineum HOM05D007074 ORTHO05D008542 6.1e-19 99.0 292 33.6
BcaB03g13841 Brassica carinata HOM05D007074 ORTHO05D008542 1.4e-18 97.8 270 34.8
BcaB07g32617 Brassica carinata HOM05D007074 ORTHO05D008542 1.4e-18 97.8 287 33.4
PGSC0003DMG400021166 Solanum tuberosum HOM05D007074 ORTHO05D008542 1.4e-18 97.8 270 37.4
THA.LOC104820655 Tarenaya hassleriana HOM05D007074 ORTHO05D008542 3.9e-18 96.3 280 33.2
BcaC05g27044 Brassica carinata HOM05D007074 ORTHO05D008542 5.1e-18 95.9 271 32.8
C05p29030 Brassica napus HOM05D007074 ORTHO05D008542 5.1e-18 95.9 271 32.8
BolC5t31631H Brassica oleracea HOM05D007074 ORTHO05D008542 5.1e-18 95.9 271 32.8
vmacro03335 Vaccinium macrocarpon HOM05D001104 ORTHO05D006535 5.1e-18 95.9 265 37.0
A09p36350 Brassica napus HOM05D007074 ORTHO05D008542 8.8e-18 95.1 276 35.1
BraA09t39159Z Brassica rapa HOM05D007074 ORTHO05D008542 8.8e-18 95.1 276 35.1
A07p10060 Brassica napus HOM05D007074 ORTHO05D008542 1.1e-17 94.7 269 32.3
BraA07t28799Z Brassica rapa HOM05D007074 ORTHO05D008542 1.1e-17 94.7 269 32.3
Rhsim13G0115100 Rhododendron simsii HOM05D007074 ORTHO05D008542 1.1e-17 94.7 116 49.1
Ca_00533_v3 Cicer arietinum L. HOM05D007074 ORTHO05D008542 3.3e-17 93.2 225 42.7
Lalb_Chr18g0055351 Lupinus albus HOM05D007074 ORTHO05D008542 4.3e-17 92.8 268 36.9
Carub.0004s1629 Capsella rubella HOM05D007074 ORTHO05D008542 5.7e-17 92.4 302 34.8
BraA05t20049Z Brassica rapa HOM05D007074 ORTHO05D008542 2.2e-16 90.5 285 33.0
MELO3C002739.2 Cucumis melo HOM05D007074 ORTHO05D008542 2.2e-16 90.5 258 34.9
A05p11040 Brassica napus HOM05D007074 ORTHO05D008542 2.8e-16 90.1 285 32.6
BcaB02g09522 Brassica carinata HOM05D007074 ORTHO05D008542 4.8e-16 89.4 258 32.9
MBI02_g24299_MAGBIO Magnolia biondii HOM05D007074 ORTHO05D008542 4.8e-16 89.4 275 31.3
Sp4g16880 Schrenkiella parvula HOM05D007074 ORTHO05D008542 4.8e-16 89.4 285 32.6
AT2G34610 Arabidopsis thaliana HOM05D007074 ORTHO05D008542 1.1e-15 88.2 298 30.9
C04p14170 Brassica napus HOM05D007074 ORTHO05D008542 2.4e-15 87.0 284 32.4
BolC4t23006H Brassica oleracea HOM05D007074 ORTHO05D008542 2.4e-15 87.0 284 32.4
Sed0013579 Sechium edule HOM05D007074 ORTHO05D008542 2.4e-15 87.0 237 35.9
CARHR128710 Cardamine hirsuta HOM05D007074 ORTHO05D008542 5.3e-15 85.9 296 32.1
AL4G30590 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 6.9e-15 85.5 293 31.4
BcaC02g11538 Brassica carinata HOM05D007074 ORTHO05D008542 6.9e-15 85.5 284 32.0
AL270U10020 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 1.2e-14 84.7 293 31.4
CsaV3_1G032390 Cucumis sativus L. HOM05D007074 ORTHO05D008542 1.5e-14 84.3 257 33.5
AT1G30190 Arabidopsis thaliana HOM05D007074 ORTHO05D008542 2.0e-14 84.0 288 32.6
Haze_05622 Corylus avellana HOM05D007074 ORTHO05D008542 2.5e-12 77.0 139 42.4
ClCG03G006810 Citrullus lanatus HOM05D007074 ORTHO05D008542 7.2e-12 75.5 211 36.0
CANSAT35G1578 Cannabis sativa HOM05D007074 ORTHO05D008542 9.4e-12 75.1 92 53.3
Cfa000926 Carpinus fangiana HOM05D007074 ORTHO05D008542 1.2e-11 74.7 146 39.7
CsaV3_1G032290 Cucumis sativus L. HOM05D035155 ORTHO05D008542 4.7e-11 72.8 239 34.7
DCAR_003900 Daucus carota HOM05D007074 ORTHO05D008542 7.9e-11 72.0 234 32.1
FAN11G3402 Fragaria x ananassa HOM05D007074 ORTHO05D008542 2.8e-08 63.5 81 54.3
Sed0023002 Sechium edule HOM05D007074 ORTHO05D008542 3.1e-07 60.1 238 30.7
FvH4_6g37202 Fragaria vesca HOM05D031106 ORTHO05D035407 6.9e-07 58.9 225 31.6
MELO3C002749.2 Cucumis melo HOM05D035155 ORTHO05D008542 2.6e-06 57.0 215 32.1
Oeu052361.1 Olea europaea HOM05D007074 ORTHO05D008542 4.5e-06 56.2 73 52.1


User provided reference genes

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