Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G142600 Theobroma cacao HOM05D007439 ORTHO05D009294 6.2e-129 465.7 693 100.0
Thecc.06G142800 Theobroma cacao HOM05D007439 ORTHO05D009294 6.2e-129 465.7 693 100.0
Thecc.06G142300 Theobroma cacao HOM05D007439 ORTHO05D009294 5.1e-115 419.5 693 97.3
Duzib235G1301 Durio zibethinus HOM05D007439 ORTHO05D009294 7.4e-106 389.0 693 90.2
Gorai.009G151900 Gossypium raimondii HOM05D007439 ORTHO05D009294 4.4e-98 363.2 693 88.2
Gohir.D05G147800 Gossypium hirsutum HOM05D007439 ORTHO05D009294 2.8e-97 360.5 693 88.0
Gohir.A05G145400 Gossypium hirsutum HOM05D007439 ORTHO05D009294 6.3e-97 359.4 696 80.6
Manes.15G044700 Manihot esculenta HOM05D007439 ORTHO05D009294 5.2e-59 233.4 710 82.0
MD05G1251800 Malus domestica HOM05D007439 ORTHO05D009294 6.4e-57 226.5 687 82.7
Prupe.4G111800 Prunus persica HOM05D007439 ORTHO05D009294 6.6e-54 216.5 686 77.7
CiPaw.09G077400 Carya illinoinensis HOM05D007439 ORTHO05D009294 6.2e-52 209.9 711 79.5
Ciclev10014445m.g Citrus clementina HOM05D007439 ORTHO05D009294 1.1e-51 209.1 703 76.8
TWI38G1636 Tripterygium wilfordii HOM05D007439 ORTHO05D009294 1.4e-51 208.8 659 85.7
Atru.chr10.530 Acer truncatum HOM05D007439 ORTHO05D009294 8.9e-51 206.1 662 85.6
Sabra15G0138100 Salix brachista HOM05D007439 ORTHO05D009294 8.9e-51 206.1 710 82.0
Lj3g0009249 Lotus japonicus HOM05D007439 ORTHO05D009294 1.7e-49 201.8 647 86.1
Potri.015G121700 Populus trichocarpa HOM05D007439 ORTHO05D009294 2.9e-49 201.1 710 81.0
FvH4_3g12270 Fragaria vesca HOM05D007439 ORTHO05D009294 4.9e-49 200.3 702 81.3
Cpa.g.sc135.9 Carica papaya HOM05D007439 ORTHO05D009294 2.4e-48 198.0 670 83.7
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 3.2e-48 197.6 662 83.4
Psat0s929g0160 Pisum sativum HOM05D007439 ORTHO05D009294 7.1e-48 196.4 689 80.4
Glyma.09G242500 Glycine max HOM05D007439 ORTHO05D009294 2.7e-47 194.5 690 80.3
Dinv02254 Davidia involucrata HOM05D007439 ORTHO05D009294 1.0e-46 192.6 670 83.9
PGR042G2360 Punica granatum HOM05D007439 ORTHO05D009294 1.0e-46 192.6 659 72.7
Cfa000712 Carpinus fangiana HOM05D007439 ORTHO05D009294 1.3e-46 192.2 660 83.0
Lalb_Chr01g0021581 Lupinus albus HOM05D007439 ORTHO05D009294 3.0e-46 191.0 657 83.6
RcHm_v2.0_Chr5g0020081 Rosa chinensis HOM05D007439 ORTHO05D009294 3.9e-46 190.7 714 79.1
Rhsim08G0175300 Rhododendron simsii HOM05D007439 ORTHO05D009294 1.1e-45 189.1 689 81.4
Ca_04050_v3 Cicer arietinum L. HOM05D007439 ORTHO05D009294 9.5e-45 186.0 656 84.0
CANSAT80G1475 Cannabis sativa HOM05D007439 ORTHO05D009294 6.2e-44 183.3 648 78.5
Lj2C350T3 Lonicera japonica HOM05D007439 ORTHO05D009294 4.0e-43 180.6 651 70.0
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 8.9e-43 179.5 694 71.8
Actinidia22395 Actinidia chinensis HOM05D007439 ORTHO05D009294 1.2e-42 179.1 688 80.1
Medtr7g405940 Medicago truncatula HOM05D007439 ORTHO05D009294 2.6e-42 177.9 643 84.8
AUR62035769 Chenopodium quinoa HOM05D007439 ORTHO05D009294 3.4e-42 177.6 169 55.0
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 9.9e-42 176.0 679 79.8
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 3.7e-41 174.1 698 79.9
CANSAT80G1820 Cannabis sativa HOM05D007439 ORTHO05D009294 4.9e-41 173.7 648 79.0
EL10Ac1g02315 Beta vulgaris HOM05D007439 ORTHO05D009294 6.4e-41 173.3 149 56.4
Haze_06039 Corylus avellana HOM05D007439 ORTHO05D009294 1.1e-40 172.6 144 59.0
Sp7g18380 Schrenkiella parvula HOM05D004848 ORTHO05D006859 2.4e-40 171.4 664 81.0
Sopen02g017990 Solanum pennellii HOM05D007439 ORTHO05D009294 2.4e-40 171.4 678 79.1
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 3.2e-40 171.0 657 82.2
CAN.G149.50 Capsicum annuum HOM05D007439 ORTHO05D009294 4.1e-40 170.6 693 78.1
TAR633G0007 Trochodendron aralioides HOM05D007439 ORTHO05D009294 5.4e-40 170.2 682 72.3
Solyc02g068890.3 Solanum lycopersicum HOM05D007439 ORTHO05D009294 9.2e-40 169.5 678 78.9
A01p11750 Brassica napus HOM05D007439 ORTHO05D009294 1.2e-39 169.1 146 58.2
BraA01t01117Z Brassica rapa HOM05D007439 ORTHO05D009294 1.2e-39 169.1 146 58.2
BcaC09g51360 Brassica carinata HOM05D007439 ORTHO05D009294 1.6e-39 168.7 145 58.6
C01p13940 Brassica napus HOM05D007439 ORTHO05D009294 1.6e-39 168.7 145 58.6
BolC1t01361H Brassica oleracea HOM05D007439 ORTHO05D009294 1.6e-39 168.7 145 58.6
Eucgr.E01795 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.6e-39 168.7 637 75.2
Eucgr.E01800 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.6e-39 168.7 129 62.8
Sc02g0008330 Simmondsia chinensis HOM05D007439 ORTHO05D009294 1.6e-39 168.7 695 79.1
THA.LOC104811547 Tarenaya hassleriana HOM05D007439 ORTHO05D009294 1.6e-39 168.7 689 80.7
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 4.6e-39 167.2 698 72.9
Phvul.008G046300 Phaseolus vulgaris HOM05D007439 ORTHO05D009294 4.6e-39 167.2 647 82.8
Sed0017437 Sechium edule HOM05D007439 ORTHO05D009294 7.8e-39 166.4 692 72.0
Aa31LG6G2350 Aethionema arabicum HOM05D004848 ORTHO05D006859 1.7e-38 165.2 659 82.7
BcaNung01745 Brassica carinata HOM05D007439 ORTHO05D009294 3.9e-38 164.1 178 52.2
PGSC0003DMG400010332 Solanum tuberosum HOM05D007439 ORTHO05D009294 5.1e-38 163.7 678 78.8
VMungo1383G3026 Vigna mungo HOM05D007439 ORTHO05D009294 3.3e-37 161.0 685 78.7
Ah.11g038960 Amaranthus hybridus HOM05D007439 ORTHO05D009294 5.6e-37 160.2 146 54.8
CSS0002129 Camellia sinensis var. sinensis HOM05D007439 ORTHO05D009294 5.6e-37 160.2 692 79.9
DCAR_003780 Daucus carota HOM05D007439 ORTHO05D009294 5.6e-37 160.2 171 51.5
Cc09_g06120 Coffea canephora HOM05D007439 ORTHO05D009294 3.6e-36 157.5 689 74.0
COL.COLO4_30991 Corchorus olitorius HOM05D007439 ORTHO05D009294 3.6e-36 157.5 86 89.5
AL7G34150 Arabidopsis lyrata HOM05D004848 ORTHO05D009294 4.7e-36 157.1 142 55.6
MELO3C021752.2 Cucumis melo HOM05D007439 ORTHO05D009294 1.1e-35 156.0 693 73.4
Medtr7g007400 Medicago truncatula HOM05D007439 ORTHO05D009294 1.4e-35 155.6 626 85.3
AT4G19890 Arabidopsis thaliana HOM05D007439 ORTHO05D009294 4.0e-35 154.1 657 82.5
ClCG01G009470 Citrullus lanatus HOM05D007439 ORTHO05D009294 6.8e-35 153.3 654 80.7
Carub.0007s2132 Capsella rubella HOM05D007439 ORTHO05D009294 2.6e-34 151.4 640 84.4
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 3.4e-34 151.0 124 58.9
SHI24856 Sapria himalayana HOM05D007439 ORTHO05D009294 6.4e-33 146.7 150 52.7
Oeu060350.1 Olea europaea HOM05D007439 ORTHO05D009294 1.4e-32 145.6 696 78.6
Thhalv10027430m.g Eutrema salsugineum HOM05D007439 ORTHO05D009294 4.2e-32 144.1 123 57.7
Migut.F01393 Erythranthe guttata HOM05D007439 ORTHO05D009294 5.4e-32 143.7 154 51.3
HanXRQChr14g0447351 Helianthus annuus HOM05D007439 ORTHO05D009294 1.2e-31 142.5 141 51.1
Peaxi162Scf00149g00061 Petunia axillaris HOM05D007439 ORTHO05D009294 1.6e-31 142.1 118 61.0
CARHR226670 Cardamine hirsuta HOM05D007439 ORTHO05D009294 2.1e-31 141.7 637 84.1
SGA_v2.0_scaffold298G47685 Striga asiatica HOM05D007439 ORTHO05D009294 3.5e-31 141.0 155 48.4
MSTRG.16346 Avicennia marina HOM05D007439 ORTHO05D009294 1.3e-30 139.0 665 79.8
SalBow6G0510 Salvia bowleyana HOM05D007439 ORTHO05D009294 1.3e-30 139.0 143 49.7
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 2.3e-30 138.3 168 45.2
Lsat_1_v5_gn_2_63940 Lactuca sativa HOM05D007439 ORTHO05D009294 3.0e-30 137.9 114 58.8
Eucgr.E01833 Eucalyptus grandis HOM05D007439 ORTHO05D009294 8.1e-28 129.8 84 72.6
Haze_06038 Corylus avellana HOM05D007439 ORTHO05D009294 1.1e-27 129.4 94 68.1
Nitab4.5_0000029g0150 Nicotiana tabacum HOM05D007439 ORTHO05D009294 1.8e-27 128.6 125 53.6
QL11p017775 Quercus lobata HOM05D000038 ORTHO05D000143 1.2e-26 125.9 83 72.3
PSO210G5823 Papaver somniferum HOM05D007439 ORTHO05D009294 1.5e-26 125.6 180 41.1
AUR62034958 Chenopodium quinoa HOM05D007439 ORTHO05D009294 2.6e-26 124.8 115 53.9
ECA238G3489 Erigeron canadensis HOM05D000031 ORTHO05D000030 2.6e-26 124.8 106 58.5
PSO210G3018 Papaver somniferum HOM05D007439 ORTHO05D009294 7.6e-26 123.2 113 53.1
RcHm_v2.0_Chr7g0211421 Rosa chinensis HOM05D007439 ORTHO05D009294 3.2e-24 117.9 107 54.2
ATR0049G016 Amborella trichopoda HOM05D007439 ORTHO05D009294 5.4e-24 117.1 169 36.1
Nitab4.5_0013428g0020 Nicotiana tabacum HOM05D007439 ORTHO05D009294 2.7e-23 114.8 81 65.4
HPP92_005808 Vanilla planifolia HOM05D007439 ORTHO05D009294 6.6e-22 110.2 106 52.8
HPP92_005782 Vanilla planifolia HOM05D007439 ORTHO05D009294 1.1e-21 109.4 106 52.8
Eucgr.E01847 Eucalyptus grandis HOM05D007439 ORTHO05D009294 2.5e-21 108.2 84 60.7
Eucgr.E01870 Eucalyptus grandis HOM05D007439 ORTHO05D009294 6.2e-20 103.6 84 59.5
MBI03_g16306_MAGBIO Magnolia biondii HOM05D007439 ORTHO05D009294 3.1e-19 101.3 144 39.6
MD10G1232900 Malus domestica HOM05D007439 ORTHO05D009294 2.6e-18 98.2 59 81.4
Eucgr.E01791 Eucalyptus grandis HOM05D007439 ORTHO05D009294 4.9e-17 94.0 60 71.7
BcaB06g28505 Brassica carinata HOM05D007439 ORTHO05D009294 7.1e-16 90.1 83 57.8
BolC4t27551H Brassica oleracea HOM05D007439 ORTHO05D009294 7.1e-16 90.1 83 57.8
Haze_06045 Corylus avellana HOM05D001622 ORTHO05D009294 1.2e-15 89.4 67 62.7
CDE06G0761 Ceratophyllum demersum HOM05D000063 ORTHO05D002147 1.6e-15 89.0 130 35.4
SEGI_11644 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 2.1e-15 88.6 152 34.9
SEGI_34940 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 2.1e-15 88.6 152 34.9
C04p60520 Brassica napus HOM05D007439 ORTHO05D009294 1.0e-14 86.3 69 63.8
Eucgr.E01806 Eucalyptus grandis HOM05D007439 ORTHO05D009294 3.9e-14 84.3 50 80.0
Os11g0607100 Oryza sativa ssp. japonica HOM05D007439 ORTHO05D009294 1.9e-13 82.0 110 39.1
Zm00001eb167160 Zea mays HOM05D007439 ORTHO05D009294 9.6e-13 79.7 109 36.7


User provided reference genes

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