Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G142300 Theobroma cacao HOM05D007439 ORTHO05D009294 2.9e-118 430.3 693 100.0
Thecc.06G142600 Theobroma cacao HOM05D007439 ORTHO05D009294 8.7e-115 418.7 693 97.3
Thecc.06G142800 Theobroma cacao HOM05D007439 ORTHO05D009294 8.7e-115 418.7 693 97.3
Duzib235G1301 Durio zibethinus HOM05D007439 ORTHO05D009294 9.4e-101 372.1 693 89.9
Gorai.009G151900 Gossypium raimondii HOM05D007439 ORTHO05D009294 4.7e-92 343.2 693 87.7
Gohir.D05G147800 Gossypium hirsutum HOM05D007439 ORTHO05D009294 3.0e-91 340.5 693 87.6
Gohir.A05G145400 Gossypium hirsutum HOM05D007439 ORTHO05D009294 4.0e-91 340.1 696 80.2
Manes.15G044700 Manihot esculenta HOM05D007439 ORTHO05D009294 2.2e-57 228.0 710 82.4
CiPaw.09G077400 Carya illinoinensis HOM05D007439 ORTHO05D009294 1.8e-51 208.4 711 81.2
MD05G1251800 Malus domestica HOM05D007439 ORTHO05D009294 4.0e-51 207.2 687 82.4
Sabra15G0138100 Salix brachista HOM05D007439 ORTHO05D009294 2.0e-50 204.9 710 83.7
Ciclev10014445m.g Citrus clementina HOM05D007439 ORTHO05D009294 2.9e-49 201.1 703 77.2
Prupe.4G111800 Prunus persica HOM05D007439 ORTHO05D009294 2.9e-49 201.1 711 75.7
Potri.015G121700 Populus trichocarpa HOM05D007439 ORTHO05D009294 3.7e-49 200.7 710 82.8
Cpa.g.sc135.9 Carica papaya HOM05D007439 ORTHO05D009294 4.9e-49 200.3 708 82.2
FvH4_3g12270 Fragaria vesca HOM05D007439 ORTHO05D009294 5.4e-48 196.8 701 82.9
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 9.2e-48 196.1 662 85.3
TWI38G1636 Tripterygium wilfordii HOM05D007439 ORTHO05D009294 9.2e-48 196.1 659 85.9
Lj3g0009249 Lotus japonicus HOM05D007439 ORTHO05D009294 1.6e-47 195.3 647 86.9
Dinv02254 Davidia involucrata HOM05D007439 ORTHO05D009294 1.0e-46 192.6 670 86.0
Atru.chr10.530 Acer truncatum HOM05D007439 ORTHO05D009294 3.0e-46 191.0 691 83.2
Glyma.09G242500 Glycine max HOM05D007439 ORTHO05D009294 5.1e-46 190.3 690 81.6
RcHm_v2.0_Chr5g0020081 Rosa chinensis HOM05D007439 ORTHO05D009294 5.1e-46 190.3 714 81.1
Psat0s929g0160 Pisum sativum HOM05D007439 ORTHO05D009294 3.3e-45 187.6 689 80.4
Cfa000712 Carpinus fangiana HOM05D007439 ORTHO05D009294 5.6e-45 186.8 660 84.5
PGR042G2360 Punica granatum HOM05D007439 ORTHO05D009294 3.6e-44 184.1 659 73.0
Ca_04050_v3 Cicer arietinum L. HOM05D007439 ORTHO05D009294 3.1e-43 181.0 656 85.5
Lalb_Chr01g0021581 Lupinus albus HOM05D007439 ORTHO05D009294 3.1e-43 181.0 696 80.5
Actinidia22395 Actinidia chinensis HOM05D007439 ORTHO05D009294 5.2e-43 180.3 688 82.3
Rhsim08G0175300 Rhododendron simsii HOM05D007439 ORTHO05D009294 8.9e-43 179.5 689 81.9
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 1.4e-40 172.2 184 50.5
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 2.4e-40 171.4 657 84.3
Haze_06039 Corylus avellana HOM05D007439 ORTHO05D009294 2.4e-40 171.4 143 59.4
CANSAT80G1820 Cannabis sativa HOM05D007439 ORTHO05D009294 7.1e-40 169.9 648 80.6
Medtr7g405940 Medicago truncatula HOM05D007439 ORTHO05D009294 7.1e-40 169.9 643 85.2
BcaC09g51360 Brassica carinata HOM05D007439 ORTHO05D009294 9.2e-40 169.5 145 59.3
C01p13940 Brassica napus HOM05D007439 ORTHO05D009294 9.2e-40 169.5 145 59.3
BolC1t01361H Brassica oleracea HOM05D007439 ORTHO05D009294 9.2e-40 169.5 145 59.3
CANSAT80G1475 Cannabis sativa HOM05D007439 ORTHO05D009294 9.2e-40 169.5 648 78.5
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 1.2e-39 169.1 188 49.5
AUR62035769 Chenopodium quinoa HOM05D007439 ORTHO05D009294 2.7e-39 167.9 160 55.6
A01p11750 Brassica napus HOM05D007439 ORTHO05D009294 3.5e-39 167.5 145 58.6
BraA01t01117Z Brassica rapa HOM05D007439 ORTHO05D009294 3.5e-39 167.5 145 58.6
THA.LOC104811547 Tarenaya hassleriana HOM05D007439 ORTHO05D009294 4.6e-39 167.2 689 82.6
EL10Ac1g02315 Beta vulgaris HOM05D007439 ORTHO05D009294 7.8e-39 166.4 173 50.9
Sc02g0008330 Simmondsia chinensis HOM05D007439 ORTHO05D009294 1.0e-38 166.0 695 80.4
Eucgr.E01800 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.7e-38 165.2 118 67.8
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 2.3e-38 164.9 679 80.0
Aa31LG6G2350 Aethionema arabicum HOM05D004848 ORTHO05D006859 3.9e-38 164.1 659 84.7
BcaNung01745 Brassica carinata HOM05D007439 ORTHO05D009294 1.1e-37 162.5 171 52.0
CAN.G149.50 Capsicum annuum HOM05D007439 ORTHO05D009294 1.9e-37 161.8 693 78.2
Sopen02g017990 Solanum pennellii HOM05D007439 ORTHO05D009294 2.5e-37 161.4 678 79.2
Eucgr.E01795 Eucalyptus grandis HOM05D007439 ORTHO05D009294 4.3e-37 160.6 637 75.5
Sed0017437 Sechium edule HOM05D007439 ORTHO05D009294 4.3e-37 160.6 692 72.4
CSS0002129 Camellia sinensis var. sinensis HOM05D007439 ORTHO05D009294 5.6e-37 160.2 692 81.9
Lj2C350T3 Lonicera japonica HOM05D007439 ORTHO05D009294 5.6e-37 160.2 651 69.3
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 9.6e-37 159.5 698 73.1
Solyc02g068890.3 Solanum lycopersicum HOM05D007439 ORTHO05D009294 9.6e-37 159.5 678 79.1
Sp7g18380 Schrenkiella parvula HOM05D004848 ORTHO05D006859 1.2e-36 159.1 664 81.3
AL7G34150 Arabidopsis lyrata HOM05D004848 ORTHO05D009294 2.1e-36 158.3 142 56.3
Phvul.008G046300 Phaseolus vulgaris HOM05D007439 ORTHO05D009294 2.1e-36 158.3 647 83.2
VMungo1383G3026 Vigna mungo HOM05D007439 ORTHO05D009294 2.1e-36 158.3 685 79.4
COL.COLO4_30991 Corchorus olitorius HOM05D007439 ORTHO05D009294 3.6e-36 157.5 86 89.5
TAR633G0007 Trochodendron aralioides HOM05D007439 ORTHO05D009294 1.8e-35 155.2 682 73.5
Ah.11g038960 Amaranthus hybridus HOM05D007439 ORTHO05D009294 4.0e-35 154.1 137 56.2
AT4G19890 Arabidopsis thaliana HOM05D007439 ORTHO05D009294 6.8e-35 153.3 139 55.4
DCAR_003780 Daucus carota HOM05D007439 ORTHO05D009294 6.8e-35 153.3 155 53.5
MELO3C021752.2 Cucumis melo HOM05D007439 ORTHO05D009294 1.2e-34 152.5 693 73.9
PGSC0003DMG400010332 Solanum tuberosum HOM05D007439 ORTHO05D009294 1.2e-34 152.5 678 78.9
ClCG01G009470 Citrullus lanatus HOM05D007439 ORTHO05D009294 2.0e-34 151.8 134 56.7
Cc09_g06120 Coffea canephora HOM05D007439 ORTHO05D009294 4.4e-34 150.6 689 75.8
Carub.0007s2132 Capsella rubella HOM05D007439 ORTHO05D009294 5.8e-34 150.2 640 86.4
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 7.6e-34 149.8 123 59.3
Medtr7g007400 Medicago truncatula HOM05D007439 ORTHO05D009294 2.9e-33 147.9 626 85.8
Thhalv10027430m.g Eutrema salsugineum HOM05D007439 ORTHO05D009294 1.9e-32 145.2 123 58.5
HanXRQChr14g0447351 Helianthus annuus HOM05D007439 ORTHO05D009294 1.9e-32 145.2 141 52.5
Oeu060350.1 Olea europaea HOM05D007439 ORTHO05D009294 7.1e-32 143.3 696 80.5
Migut.F01393 Erythranthe guttata HOM05D007439 ORTHO05D009294 1.6e-31 142.1 153 51.6
MSTRG.16346 Avicennia marina HOM05D007439 ORTHO05D009294 6.0e-31 140.2 665 82.1
CARHR226670 Cardamine hirsuta HOM05D007439 ORTHO05D009294 6.0e-31 140.2 637 86.2
SHI24856 Sapria himalayana HOM05D007439 ORTHO05D009294 6.0e-31 140.2 137 55.5
Lsat_1_v5_gn_2_63940 Lactuca sativa HOM05D007439 ORTHO05D009294 1.3e-30 139.0 114 59.6
SalBow6G0510 Salvia bowleyana HOM05D007439 ORTHO05D009294 3.0e-30 137.9 142 50.0
Peaxi162Scf00149g00061 Petunia axillaris HOM05D007439 ORTHO05D009294 5.1e-30 137.1 109 64.2
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 2.5e-29 134.8 162 45.7
SGA_v2.0_scaffold298G47685 Striga asiatica HOM05D007439 ORTHO05D009294 1.6e-28 132.1 149 48.3
Eucgr.E01833 Eucalyptus grandis HOM05D007439 ORTHO05D009294 8.1e-28 129.8 84 72.6
Haze_06038 Corylus avellana HOM05D007439 ORTHO05D009294 2.4e-27 128.3 93 68.8
Nitab4.5_0000029g0150 Nicotiana tabacum HOM05D007439 ORTHO05D009294 3.1e-27 127.9 109 58.7
QL11p017775 Quercus lobata HOM05D000038 ORTHO05D000143 1.2e-26 125.9 83 72.3
PSO210G5823 Papaver somniferum HOM05D007439 ORTHO05D009294 8.4e-25 119.8 172 41.3
RcHm_v2.0_Chr7g0211421 Rosa chinensis HOM05D007439 ORTHO05D009294 1.1e-24 119.4 107 55.1
PSO210G3018 Papaver somniferum HOM05D007439 ORTHO05D009294 7.1e-24 116.7 109 53.2
AUR62034958 Chenopodium quinoa HOM05D007439 ORTHO05D009294 2.1e-23 115.2 106 54.7
Nitab4.5_0013428g0020 Nicotiana tabacum HOM05D007439 ORTHO05D009294 2.7e-23 114.8 81 65.4
ECA238G3489 Erigeron canadensis HOM05D000031 ORTHO05D000030 4.6e-23 114.0 91 63.7
ATR0049G016 Amborella trichopoda HOM05D007439 ORTHO05D009294 1.0e-22 112.8 165 35.2
HPP92_005782 Vanilla planifolia HOM05D007439 ORTHO05D009294 7.4e-21 106.7 90 58.9
Eucgr.E01847 Eucalyptus grandis HOM05D007439 ORTHO05D009294 9.6e-21 106.3 73 69.9
HPP92_005808 Vanilla planifolia HOM05D007439 ORTHO05D009294 2.1e-20 105.1 90 57.8
Eucgr.E01870 Eucalyptus grandis HOM05D007439 ORTHO05D009294 8.1e-20 103.2 73 68.5
MBI03_g16306_MAGBIO Magnolia biondii HOM05D007439 ORTHO05D009294 9.0e-19 99.8 138 41.3
MD10G1232900 Malus domestica HOM05D007439 ORTHO05D009294 2.6e-18 98.2 59 81.4
Eucgr.E01791 Eucalyptus grandis HOM05D007439 ORTHO05D009294 4.9e-17 94.0 60 71.7
CDE06G0761 Ceratophyllum demersum HOM05D000063 ORTHO05D002147 4.2e-16 90.9 120 39.2
BcaB06g28505 Brassica carinata HOM05D007439 ORTHO05D009294 7.1e-16 90.1 83 57.8
BolC4t27551H Brassica oleracea HOM05D007439 ORTHO05D009294 7.1e-16 90.1 83 57.8
Haze_06045 Corylus avellana HOM05D001622 ORTHO05D009294 9.3e-16 89.7 66 65.2
C04p60520 Brassica napus HOM05D007439 ORTHO05D009294 1.0e-14 86.3 69 63.8
Eucgr.E01806 Eucalyptus grandis HOM05D007439 ORTHO05D009294 3.9e-14 84.3 50 80.0
SEGI_11644 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 7.4e-13 80.1 147 33.3
SEGI_34940 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 7.4e-13 80.1 147 33.3
Os11g0607100 Oryza sativa ssp. japonica HOM05D007439 ORTHO05D009294 5.3e-11 73.9 100 39.0
Zm00001eb167160 Zea mays HOM05D007439 ORTHO05D009294 5.3e-11 73.9 101 36.6


User provided reference genes

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