Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 2.5e-92 342.0 165 100.0
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 1.8e-90 335.9 165 98.2
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 1.4e-74 283.1 161 81.4
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 5.2e-74 281.2 161 80.7
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 3.4e-73 278.5 161 80.1
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 2.4e-71 272.3 147 85.0
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 2.7e-62 242.3 161 69.6
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 1.9e-60 236.1 165 66.1
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 2.2e-56 222.6 162 63.0
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 3.7e-56 221.9 163 62.6
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 1.1e-55 220.3 162 63.0
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 1.9e-55 219.5 160 63.8
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 7.0e-55 217.6 161 64.0
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 1.2e-54 216.9 160 63.8
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 6.6e-53 211.1 159 61.6
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 2.5e-52 209.1 164 59.8
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 3.3e-52 208.8 167 59.9
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 5.6e-52 208.0 146 61.6
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 9.5e-52 207.2 165 58.8
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 1.2e-51 206.8 167 58.7
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 2.1e-51 206.1 166 58.4
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 2.1e-51 206.1 167 59.3
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 4.7e-51 204.9 155 63.9
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 4.7e-51 204.9 163 57.7
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 8.1e-51 204.1 140 64.3
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 1.1e-50 203.8 108 89.8
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 1.8e-50 203.0 152 62.5
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 1.8e-50 203.0 160 57.5
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 1.8e-50 203.0 141 64.5
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 8.9e-50 200.7 160 61.2
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 8.9e-50 200.7 155 61.9
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 1.2e-49 200.3 140 65.0
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 1.2e-49 200.3 155 62.6
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 1.5e-49 199.9 148 59.5
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 2.0e-49 199.5 153 62.7
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 3.4e-49 198.7 157 58.0
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 3.4e-49 198.7 152 61.8
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 4.4e-49 198.4 170 56.5
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 4.4e-49 198.4 140 65.0
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 4.4e-49 198.4 140 63.6
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 5.8e-49 198.0 155 61.9
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 5.8e-49 198.0 156 57.1
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 9.8e-49 197.2 155 61.9
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 9.8e-49 197.2 140 64.3
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 1.3e-48 196.8 140 64.3
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 1.3e-48 196.8 140 64.3
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 3.7e-48 195.3 140 63.6
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 4.9e-48 194.9 140 63.6
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 8.3e-48 194.1 154 59.7
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 2.4e-47 192.6 140 62.1
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 2.4e-47 192.6 141 63.8
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 2.4e-47 192.6 157 56.1
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 3.2e-47 192.2 148 62.8
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 4.1e-47 191.8 154 60.4
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 5.4e-47 191.4 141 61.7
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 7.1e-47 191.0 152 60.5
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 1.6e-46 189.9 161 58.4
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 6.0e-46 188.0 158 58.9
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 6.0e-46 188.0 160 58.1
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 1.3e-45 186.8 128 66.4
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 1.7e-45 186.4 158 58.2
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 3.9e-45 185.3 158 57.6
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 6.6e-45 184.5 140 60.0
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 3.3e-44 182.2 160 56.2
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 4.3e-44 181.8 147 59.2
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 5.6e-44 181.4 139 59.0
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 1.2e-43 180.3 162 54.9
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 1.6e-43 179.9 147 58.5
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 2.1e-43 179.5 153 56.9
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 2.8e-43 179.1 140 57.1
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 8.1e-43 177.6 160 56.2
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 1.8e-42 176.4 152 53.3
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 2.3e-42 176.0 146 56.2
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.3e-40 170.2 137 56.9
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.3e-40 170.2 137 56.9
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 2.2e-40 169.5 159 52.2
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 2.2e-40 169.5 159 52.2
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 4.9e-40 168.3 143 54.5
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 8.4e-40 167.5 160 50.0
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 3.2e-39 165.6 139 54.7
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 4.1e-39 165.2 157 51.6
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 9.2e-39 164.1 161 50.9
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 9.2e-39 164.1 139 54.7
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 2.1e-38 162.9 139 55.4
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 2.1e-38 162.9 145 51.7
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 3.5e-38 162.2 130 56.2
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 1.3e-37 160.2 160 50.0
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 5.1e-37 158.3 123 58.5
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 6.6e-37 157.9 111 64.0
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 8.6e-37 157.5 139 54.7
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 3.3e-36 155.6 115 64.3
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 5.6e-36 154.8 159 48.4
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 3.6e-35 152.1 160 48.1
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 6.2e-35 151.4 130 55.4
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 6.9e-34 147.9 164 46.3
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 8.9e-34 147.5 144 44.4
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 1.2e-33 147.1 144 44.4
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 1.2e-33 147.1 133 51.9
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 2.1e-30 136.3 93 68.8
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 3.9e-29 132.1 106 58.5
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 5.1e-29 131.7 158 44.3
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 6.9e-26 121.3 160 45.0
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 1.3e-24 117.1 216 33.3
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 1.7e-24 116.7 143 41.3
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 2.2e-24 116.3 158 39.9
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 1.4e-23 113.6 128 39.8
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 1.6e-22 110.2 85 60.0
Hund11170 Selenicereus undatus HOM05D006750 ORTHO05D008426 2.7e-22 109.4 78 62.8
Cpa.g.sc135.32 Carica papaya HOM05D006750 ORTHO05D008426 5.1e-21 105.1 80 57.5
Cre08.g378100 Chlamydomonas reinhardtii HOM05D006750 ORTHO05D008426 1.0e-13 80.9 134 34.3
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 1.8e-13 80.1 62 61.3
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 8.7e-13 77.8 130 33.1
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 2.5e-12 76.3 102 38.2
Hund11169 Selenicereus undatus HOM05D006750 ORTHO05D008426 5.6e-12 75.1 82 46.3
PRCOL_00005799 Prasinoderma coloniale HOM05D006750 ORTHO05D008426 5.8e-09 65.1 133 30.8
Zm00001eb233050 Zea mays HOM05D006750 ORTHO05D008426 8.4e-08 61.2 106 33.0


User provided reference genes

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