Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 1.9e-92 342.4 165 100.0
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 8.0e-91 337.0 165 98.2
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 4.0e-74 281.6 161 80.7
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 1.5e-73 279.6 161 80.1
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 9.8e-73 276.9 161 79.5
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 7.0e-71 270.8 147 84.4
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 7.8e-62 240.7 161 68.9
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 4.3e-60 235.0 165 65.5
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 3.7e-56 221.9 162 63.0
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 6.4e-56 221.1 163 62.6
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 1.9e-55 219.5 162 63.0
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 1.2e-54 216.9 160 63.1
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 2.0e-54 216.1 161 63.4
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 3.5e-54 215.3 160 63.1
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 1.9e-52 209.5 159 61.0
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 2.5e-52 209.1 164 59.8
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 4.3e-52 208.4 167 59.3
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 9.5e-52 207.2 165 58.8
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 9.5e-52 207.2 146 61.6
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 1.2e-51 206.8 163 58.3
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 1.6e-51 206.5 167 59.3
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 2.8e-51 205.7 166 58.4
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 2.8e-51 205.7 140 65.0
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 6.2e-51 204.5 160 58.1
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 6.2e-51 204.5 141 65.2
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 8.1e-51 204.1 108 89.8
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 1.4e-50 203.4 167 58.7
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 5.2e-50 201.4 155 62.6
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 6.8e-50 201.1 156 57.7
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 8.9e-50 200.7 152 61.8
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 1.2e-49 200.3 170 57.1
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 1.5e-49 199.9 157 58.6
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 1.5e-49 199.9 140 64.3
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 1.5e-49 199.9 148 59.5
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 2.6e-49 199.1 155 61.3
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 3.4e-49 198.7 160 60.6
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 4.4e-49 198.4 155 61.9
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 5.8e-49 198.0 139 64.7
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 7.5e-49 197.6 153 62.1
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 1.7e-48 196.4 152 61.2
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 2.2e-48 196.1 139 64.7
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 2.2e-48 196.1 155 61.3
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 3.7e-48 195.3 155 61.3
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 4.9e-48 194.9 139 64.0
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 6.4e-48 194.5 139 64.0
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 6.4e-48 194.5 139 64.0
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 1.1e-47 193.7 148 63.5
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 1.1e-47 193.7 154 61.0
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 1.4e-47 193.4 154 59.7
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 1.9e-47 193.0 139 63.3
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 1.9e-47 193.0 141 62.4
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 1.9e-47 193.0 141 63.1
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 2.4e-47 192.6 139 63.3
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 5.4e-47 191.4 152 60.5
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 1.2e-46 190.3 155 58.7
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 1.2e-46 190.3 157 55.4
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 4.6e-46 188.3 161 57.8
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 7.8e-46 187.6 158 58.9
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 7.8e-46 187.6 161 59.6
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 1.0e-45 187.2 128 66.4
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 1.7e-45 186.4 158 57.6
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 2.3e-45 186.0 140 60.7
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 2.3e-45 186.0 158 58.2
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 1.1e-44 183.7 147 59.9
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 4.3e-44 181.8 162 55.6
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 4.3e-44 181.8 147 59.2
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 7.3e-44 181.0 160 56.2
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 1.2e-43 180.3 140 57.9
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 1.2e-43 180.3 139 58.3
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 2.1e-43 179.5 160 56.9
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 8.1e-43 177.6 153 56.2
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 6.8e-42 174.5 152 52.6
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 8.9e-42 174.1 146 55.5
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 1.7e-40 169.9 159 52.2
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 1.7e-40 169.9 159 52.2
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 4.9e-40 168.3 136 56.6
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 4.9e-40 168.3 136 56.6
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 2.4e-39 166.0 143 53.8
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 3.2e-39 165.6 138 55.1
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 4.1e-39 165.2 160 49.4
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 7.1e-39 164.5 130 56.9
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 9.2e-39 164.1 138 55.1
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 1.6e-38 163.3 161 50.9
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 2.1e-38 162.9 145 51.7
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 2.1e-38 162.9 157 51.0
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 2.7e-38 162.5 139 55.4
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 7.8e-38 161.0 160 50.6
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 1.1e-36 157.1 139 54.7
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 1.9e-36 156.4 111 63.1
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 2.5e-36 156.0 122 58.2
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.2e-35 153.7 115 63.5
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 2.8e-35 152.5 130 55.4
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 2.8e-35 152.5 159 47.8
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 1.4e-34 150.2 160 47.5
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 6.9e-34 147.9 133 51.9
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 8.9e-34 147.5 144 44.4
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 1.2e-33 147.1 164 46.3
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 1.5e-33 146.7 144 44.4
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 1.6e-30 136.7 93 68.8
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 3.0e-29 132.5 158 44.3
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 3.9e-29 132.1 106 58.5
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 9.0e-26 120.9 160 45.0
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 2.2e-24 116.3 158 39.9
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 4.9e-24 115.2 216 32.4
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 8.4e-24 114.4 143 40.6
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 8.4e-24 114.4 128 39.8
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 1.6e-22 110.2 85 60.0
Hund11170 Selenicereus undatus HOM05D006750 ORTHO05D008426 4.6e-22 108.6 78 62.8
Cpa.g.sc135.32 Carica papaya HOM05D006750 ORTHO05D008426 1.9e-20 103.2 80 56.2
Cre08.g378100 Chlamydomonas reinhardtii HOM05D006750 ORTHO05D008426 7.1e-15 84.7 134 35.1
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 1.8e-13 80.1 102 39.2
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 3.0e-13 79.3 62 61.3
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 5.1e-13 78.6 130 33.1
Hund11169 Selenicereus undatus HOM05D006750 ORTHO05D008426 4.3e-12 75.5 82 46.3
PRCOL_00005799 Prasinoderma coloniale HOM05D006750 ORTHO05D008426 7.6e-09 64.7 133 30.8
Zm00001eb233050 Zea mays HOM05D006750 ORTHO05D008426 1.7e-08 63.5 106 34.0
TPR.G24917 Trifolium pratense HOM05D006750 ORTHO05D008426 7.9e-06 54.7 80 37.5


User provided reference genes

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