Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G138500 Theobroma cacao HOM05D001218 ORTHO05D011584 9.4e-98 360.1 176 100.0
Duzib235G1528 Durio zibethinus HOM05D001218 ORTHO05D011584 3.2e-29 132.5 79 81.0
Gorai.010G169500 Gossypium raimondii HOM05D001218 ORTHO05D011584 1.2e-28 130.6 89 69.7
COL.COLO4_30953 Corchorus olitorius HOM05D001218 ORTHO05D011584 3.1e-24 115.9 73 76.7
Gohir.A06G141380 Gossypium hirsutum HOM05D001218 ORTHO05D011584 3.1e-24 115.9 102 57.8
Gohir.D06G145600 Gossypium hirsutum HOM05D001218 ORTHO05D011584 5.2e-24 115.2 111 56.8
MBI04_g22928_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D004088 6.0e-12 75.1 70 51.4
CiPaw.07G074600 Carya illinoinensis HOM05D001218 ORTHO05D011584 1.8e-11 73.6 69 50.7
Atru.chr8.848 Acer truncatum HOM05D001218 ORTHO05D011584 2.3e-11 73.2 85 43.5
Nn1g08050 Nelumbo nucifera HOM05D001218 ORTHO05D004088 3.0e-11 72.8 70 48.6
Ciclev10013226m.g Citrus clementina HOM05D001218 ORTHO05D011584 3.9e-11 72.4 73 49.3
PSO210G1993 Papaver somniferum HOM05D001218 ORTHO05D004088 5.1e-11 72.0 70 51.4
PSO210G6488 Papaver somniferum HOM05D001218 ORTHO05D004088 5.1e-11 72.0 70 51.4
TAR375G0723 Trochodendron aralioides HOM05D001218 ORTHO05D004088 8.7e-11 71.2 70 51.4
Mapoly0105s0043 Marchantia polymorpha HOM05D001218 ORTHO05D004088 1.9e-10 70.1 71 49.3
HanXRQChr08g0216771 Helianthus annuus HOM05D001218 ORTHO05D004088 3.3e-10 69.3 70 44.3
CDE10G0658 Ceratophyllum demersum HOM05D001218 ORTHO05D004088 4.3e-10 68.9 70 47.1
CDE05G0891 Ceratophyllum demersum HOM05D001218 ORTHO05D004088 5.6e-10 68.6 70 45.7
Zm00001eb252630 Zea mays HOM05D001218 ORTHO05D004088 5.6e-10 68.6 74 43.2
ATR0057G131 Amborella trichopoda HOM05D001218 ORTHO05D004088 9.6e-10 67.8 74 47.3
MSTRG.24899 Avicennia marina HOM05D001218 ORTHO05D004088 9.6e-10 67.8 70 42.9
Hund01817 Selenicereus undatus HOM05D001218 ORTHO05D004088 9.6e-10 67.8 70 45.7
ATR0605G031 Amborella trichopoda HOM05D001218 ORTHO05D004088 1.3e-09 67.4 67 49.3
AUR62035185 Chenopodium quinoa HOM05D001218 ORTHO05D004088 1.3e-09 67.4 70 45.7
AUR62043319 Chenopodium quinoa HOM05D001218 ORTHO05D004088 1.3e-09 67.4 70 45.7
Dinv43989 Davidia involucrata HOM05D001218 ORTHO05D011584 1.3e-09 67.4 75 49.3
PSO017G6550 Papaver somniferum HOM05D001218 ORTHO05D004088 1.3e-09 67.4 70 47.1
PSO170G0003 Papaver somniferum HOM05D001218 ORTHO05D004088 1.3e-09 67.4 70 47.1
TAR625G0052 Trochodendron aralioides HOM05D001218 ORTHO05D004088 1.3e-09 67.4 74 43.2
Carub.0002s2346 Capsella rubella HOM05D001218 ORTHO05D004088 1.6e-09 67.0 88 39.8
Lj4C3G12 Lonicera japonica HOM05D001218 ORTHO05D004088 1.6e-09 67.0 70 44.3
Nn5g31069 Nelumbo nucifera HOM05D001218 ORTHO05D004088 1.6e-09 67.0 74 43.2
BolC6t40103H Brassica oleracea HOM05D001218 ORTHO05D004088 2.1e-09 66.6 88 37.5
CSS0003035 Camellia sinensis var. sinensis HOM05D001218 ORTHO05D004088 2.1e-09 66.6 74 43.2
Hund01814 Selenicereus undatus HOM05D001218 ORTHO05D004088 2.1e-09 66.6 70 44.3
C06p50810 Brassica napus HOM05D001218 ORTHO05D004088 2.8e-09 66.2 88 37.5
Hma1.2p1_0489F.1_g164180 Hydrangea macrophylla HOM05D001218 ORTHO05D004088 2.8e-09 66.2 70 42.9
MBI04_g42538_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D004088 2.8e-09 66.2 72 44.4
Manes.18G001100 Manihot esculenta HOM05D001218 ORTHO05D004088 2.8e-09 66.2 70 45.7
Oeu042498.1 Olea europaea HOM05D001218 ORTHO05D004088 2.8e-09 66.2 70 44.3
Sabra02G0002000 Salix brachista HOM05D001218 ORTHO05D004088 2.8e-09 66.2 74 43.2
Zm00001eb188910 Zea mays HOM05D001218 ORTHO05D004088 2.8e-09 66.2 74 41.9
BcaB03g12841 Brassica carinata HOM05D001218 ORTHO05D004088 3.7e-09 65.9 70 42.9
Sc02g0009320 Simmondsia chinensis HOM05D001218 ORTHO05D004088 3.7e-09 65.9 70 42.9
Hma1.2p1_0810F.1_g221990 Hydrangea macrophylla HOM05D001218 ORTHO05D004088 4.8e-09 65.5 70 42.9
Nn6g31597 Nelumbo nucifera HOM05D001218 ORTHO05D004088 4.8e-09 65.5 74 43.2
Os06g0326400 Oryza sativa ssp. japonica HOM05D001218 ORTHO05D004088 4.8e-09 65.5 74 43.2
Peaxi162Scf00064g01432 Petunia axillaris HOM05D001218 ORTHO05D004088 4.8e-09 65.5 70 42.9
Pp3c18_9850 Physcomitrium patens HOM05D001218 ORTHO05D003142 4.8e-09 65.5 70 44.3
MSTRG.1008 Avicennia marina HOM05D001218 ORTHO05D004088 6.2e-09 65.1 70 42.9
A07p42210 Brassica napus HOM05D001218 ORTHO05D004088 6.2e-09 65.1 88 37.5
BraA07t31750Z Brassica rapa HOM05D001218 ORTHO05D004088 6.2e-09 65.1 88 37.5
CSS0013185 Camellia sinensis var. sinensis HOM05D001218 ORTHO05D004088 6.2e-09 65.1 74 41.9
CANSAT25G3586 Cannabis sativa HOM05D001218 ORTHO05D004088 6.2e-09 65.1 70 42.9
Manes.05G129500 Manihot esculenta HOM05D001218 ORTHO05D004088 6.2e-09 65.1 70 44.3
PGR031G3703 Punica granatum HOM05D001218 ORTHO05D004088 6.2e-09 65.1 70 45.7
QL02p016004 Quercus lobata HOM05D001218 ORTHO05D004088 6.2e-09 65.1 70 44.3
SMO115G0046 Selaginella moellendorffii HOM05D001218 ORTHO05D004088 6.2e-09 65.1 74 39.2
SGA_v2.0_scaffold161G37861 Striga asiatica HOM05D001218 ORTHO05D004088 6.2e-09 65.1 70 44.3
Actinidia17088 Actinidia chinensis HOM05D001218 ORTHO05D004088 8.1e-09 64.7 69 43.5
Actinidia37903 Actinidia chinensis HOM05D001218 ORTHO05D004088 8.1e-09 64.7 70 42.9
AL1G33980 Arabidopsis lyrata HOM05D001218 ORTHO05D004088 8.1e-09 64.7 70 41.4
BcaC08g47163 Brassica carinata HOM05D001218 ORTHO05D004088 8.1e-09 64.7 88 37.5
BcaC08g47232 Brassica carinata HOM05D001218 ORTHO05D004088 8.1e-09 64.7 88 37.5
Carub.0001s2042 Capsella rubella HOM05D001218 ORTHO05D004088 8.1e-09 64.7 70 41.4
CARHR021410 Cardamine hirsuta HOM05D001218 ORTHO05D004088 8.1e-09 64.7 70 41.4
DCAR_017621 Daucus carota HOM05D001218 ORTHO05D004088 8.1e-09 64.7 70 41.4
Dinv23340 Davidia involucrata HOM05D001218 ORTHO05D004088 8.1e-09 64.7 70 41.4
ECA233G0383 Erigeron canadensis HOM05D001218 ORTHO05D004088 8.1e-09 64.7 82 39.0
Thhalv10018291m.g Eutrema salsugineum HOM05D001218 ORTHO05D004088 8.1e-09 64.7 88 37.5
FvH4_5g26380 Fragaria vesca HOM05D001218 ORTHO05D004088 8.1e-09 64.7 74 41.9
FAN04G0409 Fragaria x ananassa HOM05D001218 ORTHO05D004088 8.1e-09 64.7 74 41.9
FAN08G1986 Fragaria x ananassa HOM05D001218 ORTHO05D004088 8.1e-09 64.7 74 41.9
FAN13G0530 Fragaria x ananassa HOM05D001218 ORTHO05D004088 8.1e-09 64.7 74 41.9
FAN18G2420 Fragaria x ananassa HOM05D001218 ORTHO05D004088 8.1e-09 64.7 74 41.9
Potri.002G003100 Populus trichocarpa HOM05D001218 ORTHO05D004088 8.1e-09 64.7 74 41.9
Sp5g31710 Schrenkiella parvula HOM05D001218 ORTHO05D004088 8.1e-09 64.7 88 37.5
Solyc12g095760.2 Solanum lycopersicum HOM05D001218 ORTHO05D004088 8.1e-09 64.7 74 40.5
Sopen12g031660 Solanum pennellii HOM05D001218 ORTHO05D004088 8.1e-09 64.7 74 40.5
PGSC0003DMG400010007 Solanum tuberosum HOM05D001218 ORTHO05D004088 8.1e-09 64.7 70 41.4
PGSC0003DMG400029309 Solanum tuberosum HOM05D001218 ORTHO05D004088 8.1e-09 64.7 74 40.5
TAR376G0228 Trochodendron aralioides HOM05D001218 ORTHO05D004088 8.1e-09 64.7 70 41.4
Atru.chr13.35 Acer truncatum HOM05D001218 ORTHO05D004088 1.1e-08 64.3 70 42.9
CAN.G208.42 Capsicum annuum HOM05D001218 ORTHO05D004088 1.1e-08 64.3 70 41.4
CiPaw.07G131800 Carya illinoinensis HOM05D001218 ORTHO05D004088 1.1e-08 64.3 70 44.3
MD06G1002300 Malus domestica HOM05D001218 ORTHO05D004088 1.1e-08 64.3 82 39.0
RcHm_v2.0_Chr7g0217221 Rosa chinensis HOM05D001218 ORTHO05D004088 1.1e-08 64.3 74 41.9
Solyc04g082880.4 Solanum lycopersicum HOM05D001218 ORTHO05D004088 1.1e-08 64.3 70 41.4
Sopen04g036520 Solanum pennellii HOM05D001218 ORTHO05D004088 1.1e-08 64.3 70 41.4
Aa31LG7G5130 Aethionema arabicum HOM05D001218 ORTHO05D004088 1.4e-08 63.9 88 37.5
CARHR070100 Cardamine hirsuta HOM05D001218 ORTHO05D004088 1.4e-08 63.9 88 37.5
Ciclev10000595m.g Citrus clementina HOM05D001218 ORTHO05D004088 1.4e-08 63.9 74 41.9
Duzib093G2014 Durio zibethinus HOM05D001218 ORTHO05D004088 1.4e-08 63.9 74 41.9
Duzib116G0454 Durio zibethinus HOM05D001218 ORTHO05D004088 1.4e-08 63.9 74 41.9
ECA233G6219 Erigeron canadensis HOM05D001218 ORTHO05D004088 1.4e-08 63.9 82 39.0
Gohir.A02G087100 Gossypium hirsutum HOM05D001218 ORTHO05D004088 1.4e-08 63.9 74 41.9
Gohir.D02G101900 Gossypium hirsutum HOM05D001218 ORTHO05D004088 1.4e-08 63.9 74 41.9
Gorai.005G115600 Gossypium raimondii HOM05D001218 ORTHO05D004088 1.4e-08 63.9 74 41.9
Lj2g0017094 Lotus japonicus HOM05D001218 ORTHO05D004088 1.4e-08 63.9 74 40.5
Oeu064732.1 Olea europaea HOM05D001218 ORTHO05D004088 1.4e-08 63.9 70 41.4
Prupe.5G003400 Prunus persica HOM05D001218 ORTHO05D004088 1.4e-08 63.9 82 39.0
Rhsim06G0002000 Rhododendron simsii HOM05D001218 ORTHO05D004088 1.4e-08 63.9 74 39.2
AL2G36690 Arabidopsis lyrata HOM05D001218 ORTHO05D004088 1.8e-08 63.5 88 36.4
AT1G20950 Arabidopsis thaliana HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 41.4
AT1G76550 Arabidopsis thaliana HOM05D001218 ORTHO05D004088 1.8e-08 63.5 88 36.4
BcaB07g32089 Brassica carinata HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 41.4
BcaC05g26002 Brassica carinata HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 41.4
BcaC07g39066 Brassica carinata HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 41.4
A06p16940 Brassica napus HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 41.4
A08p29140 Brassica napus HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 41.4
C05p19600 Brassica napus HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 41.4
C08p20520 Brassica napus HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 41.4
BolC5t30663H Brassica oleracea HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 41.4
BolC8t49679H Brassica oleracea HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 41.4
BraA06t24804Z Brassica rapa HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 41.4
BraA08t34850Z Brassica rapa HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 41.4
Cfa014150 Carpinus fangiana HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 41.4
ClCG11G019100 Citrullus lanatus HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 42.9
MELO3C017063.2 Cucumis melo HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 42.9
CsaV3_4G037690 Cucumis sativus L. HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 42.9
DCAR_013949 Daucus carota HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 40.0
Eucgr.F01823 Eucalyptus grandis HOM05D001218 ORTHO05D004088 1.8e-08 63.5 85 36.5
Thhalv10007087m.g Eutrema salsugineum HOM05D001218 ORTHO05D004088 1.8e-08 63.5 70 41.4
Lalb_Chr10g0095321 Lupinus albus HOM05D001218 ORTHO05D004088 1.8e-08 63.5 74 41.9
TPR.G18596 Trifolium pratense HOM05D001218 ORTHO05D004088 1.8e-08 63.5 79 39.2
arahy.Tifrunner.gnm1.ann1.BFE9YH Arachis hypogaea HOM05D001218 ORTHO05D004088 2.4e-08 63.2 74 41.9
arahy.Tifrunner.gnm1.ann1.H559FZ Arachis hypogaea HOM05D001218 ORTHO05D004088 2.4e-08 63.2 74 41.9
CAN.G1330.23 Capsicum annuum HOM05D001218 ORTHO05D004088 2.4e-08 63.2 70 40.0
ECA232G2106 Erigeron canadensis HOM05D001218 ORTHO05D004088 2.4e-08 63.2 70 44.3
Glyma.07G160500 Glycine max HOM05D001218 ORTHO05D004088 2.4e-08 63.2 74 40.5
Glyma.20G007400 Glycine max HOM05D001218 ORTHO05D004088 2.4e-08 63.2 74 40.5
Lsat_1_v5_gn_9_48180 Lactuca sativa HOM05D001218 ORTHO05D004088 2.4e-08 63.2 70 42.9
Lalb_Chr04g0258861 Lupinus albus HOM05D001218 ORTHO05D004088 2.4e-08 63.2 74 39.2
MBI01_g22962_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D004088 2.4e-08 63.2 83 38.6
Medtr1g035230 Medicago truncatula HOM05D001218 ORTHO05D004088 2.4e-08 63.2 79 39.2
Nitab4.5_0000464g0120 Nicotiana tabacum HOM05D001218 ORTHO05D004088 2.4e-08 63.2 70 40.0
Nitab4.5_0001309g0150 Nicotiana tabacum HOM05D001218 ORTHO05D004088 2.4e-08 63.2 70 40.0
Nitab4.5_0003423g0060 Nicotiana tabacum HOM05D001218 ORTHO05D004088 2.4e-08 63.2 70 40.0
Peaxi162Scf00385g00622 Petunia axillaris HOM05D001218 ORTHO05D004088 2.4e-08 63.2 70 40.0
Psat6g131840 Pisum sativum HOM05D001218 ORTHO05D004088 2.4e-08 63.2 79 39.2
THA.LOC104813730 Tarenaya hassleriana HOM05D001218 ORTHO05D004088 2.4e-08 63.2 70 41.4
GSVIVG01013442001 Vitis vinifera HOM05D001218 ORTHO05D004088 2.4e-08 63.2 74 39.2
Zm00001eb381920 Zea mays HOM05D001218 ORTHO05D004088 2.4e-08 63.2 74 41.9
Cpa.g.c24967.5 Carica papaya HOM05D001218 ORTHO05D004088 3.1e-08 62.8 70 41.4
Os02g0714200 Oryza sativa ssp. japonica HOM05D001218 ORTHO05D004088 3.1e-08 62.8 71 43.7
Phvul.003G009600 Phaseolus vulgaris HOM05D001218 ORTHO05D004088 3.1e-08 62.8 74 40.5
SEGI_18001 Sequoiadendron giganteum HOM05D001218 ORTHO05D004088 3.1e-08 62.8 70 41.4
THA.LOC104812017 Tarenaya hassleriana HOM05D001218 ORTHO05D004088 3.1e-08 62.8 70 42.9
AagrBONN_evm.TU.Sc2ySwM_228.4948 Anthoceros agrestis HOM05D001218 ORTHO05D004088 4.0e-08 62.4 74 40.5
EL10Ac1g01822 Beta vulgaris HOM05D001218 ORTHO05D004088 4.0e-08 62.4 74 39.2
Lsat_1_v5_gn_2_3161 Lactuca sativa HOM05D001218 ORTHO05D004088 4.0e-08 62.4 70 41.4
Lsat_1_v5_gn_8_26721 Lactuca sativa HOM05D001218 ORTHO05D004088 4.0e-08 62.4 70 41.4
Lalb_Chr17g0338171 Lupinus albus HOM05D001218 ORTHO05D004088 4.0e-08 62.4 74 40.5
THA.LOC104804960 Tarenaya hassleriana HOM05D001218 ORTHO05D004088 4.0e-08 62.4 70 40.0
Thecc.08G098300 Theobroma cacao HOM05D001218 ORTHO05D004088 4.0e-08 62.4 74 40.5
vmacro21744 Vaccinium macrocarpon HOM05D001218 ORTHO05D004088 4.0e-08 62.4 71 40.8
Actinidia15552 Actinidia chinensis HOM05D001218 ORTHO05D004088 5.3e-08 62.0 70 41.4
Aqoxy5G00952 Aquilegia oxysepala HOM05D001218 ORTHO05D004088 5.3e-08 62.0 70 40.0
Ca_12496_v3 Cicer arietinum L. HOM05D001218 ORTHO05D004088 5.3e-08 62.0 79 38.0
Oeu035767.1 Olea europaea HOM05D001218 ORTHO05D004088 5.3e-08 62.0 70 40.0
Potri.006G024500 Populus trichocarpa HOM05D001218 ORTHO05D011584 5.3e-08 62.0 46 60.9
Sp1g18650 Schrenkiella parvula HOM05D001218 ORTHO05D004088 5.3e-08 62.0 70 40.0
Sed0027532 Sechium edule HOM05D001218 ORTHO05D004088 5.3e-08 62.0 71 42.3
TWI12G0956 Tripterygium wilfordii HOM05D001218 ORTHO05D004088 5.3e-08 62.0 74 40.5
GSVIVG01026761001 Vitis vinifera HOM05D001218 ORTHO05D011584 5.3e-08 62.0 67 47.8
CiPaw.08G078100 Carya illinoinensis HOM05D001218 ORTHO05D004088 6.9e-08 61.6 74 39.2
HanXRQChr16g0512491 Helianthus annuus HOM05D001218 ORTHO05D004088 6.9e-08 61.6 70 41.4
Potri.005G257800 Populus trichocarpa HOM05D001218 ORTHO05D004088 6.9e-08 61.6 69 43.5
TWI36G0968 Tripterygium wilfordii HOM05D001218 ORTHO05D004088 6.9e-08 61.6 71 43.7
VMungo1215G2664 Vigna mungo HOM05D001218 ORTHO05D004088 6.9e-08 61.6 71 40.8
Oeu035766.1 Olea europaea HOM05D000150 ORTHO05D000108 9.0e-08 61.2 70 40.0
Migut.N02993 Erythranthe guttata HOM05D001218 ORTHO05D004088 1.2e-07 60.8 74 39.2
HanXRQChr14g0427931 Helianthus annuus HOM05D001218 ORTHO05D004088 1.2e-07 60.8 69 43.5
Sabra05G0199700 Salix brachista HOM05D001218 ORTHO05D004088 1.2e-07 60.8 73 41.1
MSTRG.24523 Avicennia marina HOM05D001218 ORTHO05D004088 1.5e-07 60.5 70 40.0
Migut.C00344 Erythranthe guttata HOM05D001218 ORTHO05D004088 2.6e-07 59.7 70 40.0
Sabra06G0017900 Salix brachista HOM05D001218 ORTHO05D011584 2.6e-07 59.7 50 54.0
Eucgr.F03611 Eucalyptus grandis HOM05D001218 ORTHO05D004088 3.4e-07 59.3 70 40.0
MSTRG.4981 Avicennia marina HOM05D018604 ORTHO05D011584 1.3e-06 57.4 44 54.5
Cc02_g26170 Coffea canephora HOM05D001218 ORTHO05D011584 1.3e-06 57.4 49 55.1
Pp3c21_16140 Physcomitrium patens HOM05D001218 ORTHO05D004088 1.7e-06 57.0 74 40.5


User provided reference genes

Program Settings