Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 5.4e-47 190.7 96 100.0
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 5.7e-41 170.6 96 90.6
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 9.8e-41 169.9 96 90.6
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 9.8e-41 169.9 96 90.6
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.2e-40 168.7 96 90.6
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 2.4e-39 165.2 96 86.5
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 5.4e-39 164.1 96 89.6
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 3.5e-38 161.4 96 86.5
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.5e-36 155.2 96 84.4
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 2.5e-36 155.2 96 84.4
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 5.6e-36 154.1 96 83.3
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 1.5e-33 146.0 96 74.0
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 2.6e-33 145.2 96 74.0
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 3.4e-33 144.8 96 76.0
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 2.9e-32 141.7 96 71.9
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 2.4e-31 138.7 96 71.9
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 1.6e-30 136.0 96 71.9
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.7e-30 135.2 96 69.8
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.7e-30 135.2 96 69.8
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 4.6e-30 134.4 96 70.8
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 6.0e-30 134.0 96 70.8
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 6.0e-30 134.0 96 68.8
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 6.0e-30 134.0 93 71.0
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 6.0e-30 134.0 93 73.1
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 1.0e-29 133.3 96 69.8
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 1.3e-29 132.9 97 71.1
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.3e-29 132.9 96 68.8
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 5.0e-29 131.0 96 67.7
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 8.6e-29 130.2 96 68.8
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 1.5e-28 129.4 96 66.7
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 3.3e-28 128.3 96 70.8
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 3.3e-28 128.3 97 70.1
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 3.3e-28 128.3 103 66.0
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 4.3e-28 127.9 96 68.8
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 5.6e-28 127.5 94 72.3
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 7.3e-28 127.1 91 68.1
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 9.5e-28 126.7 96 68.8
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 2.1e-27 125.6 96 68.8
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 2.8e-27 125.2 96 67.7
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 3.6e-27 124.8 96 66.7
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 3.6e-27 124.8 96 66.7
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 3.6e-27 124.8 96 69.8
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 3.6e-27 124.8 102 64.7
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 4.7e-27 124.4 96 68.8
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 1.1e-26 123.2 96 66.7
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 1.4e-26 122.9 96 66.7
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 1.4e-26 122.9 107 62.6
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 1.8e-26 122.5 103 65.0
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 1.8e-26 122.5 87 70.1
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 1.8e-26 122.5 96 65.6
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 4.0e-26 121.3 96 64.6
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 5.2e-26 120.9 96 67.7
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 5.2e-26 120.9 103 64.1
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 5.2e-26 120.9 96 69.8
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 6.8e-26 120.6 96 65.6
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 6.8e-26 120.6 96 64.6
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 6.8e-26 120.6 104 65.4
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 6.8e-26 120.6 103 68.0
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 1.2e-25 119.8 96 66.7
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 1.5e-25 119.4 96 66.7
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 1.5e-25 119.4 96 64.6
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 1.5e-25 119.4 103 63.1
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 1.5e-25 119.4 103 65.0
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 2.0e-25 119.0 103 63.1
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 3.4e-25 118.2 96 64.6
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 3.4e-25 118.2 106 62.3
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 4.4e-25 117.9 89 65.2
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 5.8e-25 117.5 96 66.7
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 5.8e-25 117.5 96 66.7
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 5.8e-25 117.5 96 63.5
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 7.5e-25 117.1 108 60.2
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 7.5e-25 117.1 96 66.7
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 7.5e-25 117.1 95 61.1
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 9.8e-25 116.7 106 60.4
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 9.8e-25 116.7 96 66.7
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 1.3e-24 116.3 96 61.5
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 1.3e-24 116.3 106 61.3
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 1.7e-24 115.9 96 65.6
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 2.2e-24 115.5 96 66.7
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 2.2e-24 115.5 103 64.1
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 2.9e-24 115.2 105 59.0
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 2.9e-24 115.2 95 65.3
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 3.7e-24 114.8 97 64.9
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 4.9e-24 114.4 96 66.7
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 6.4e-24 114.0 105 61.9
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 8.3e-24 113.6 96 63.5
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 8.3e-24 113.6 105 61.0
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 1.1e-23 113.2 106 60.4
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 1.4e-23 112.8 97 66.0
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 1.4e-23 112.8 97 66.0
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 1.4e-23 112.8 97 60.8
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 1.9e-23 112.5 106 59.4
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 3.2e-23 111.7 102 60.8
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 3.2e-23 111.7 96 60.4
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.2e-23 111.7 96 64.6
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 3.2e-23 111.7 104 59.6
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 5.4e-23 110.9 96 62.5
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 7.1e-23 110.5 97 63.9
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 7.1e-23 110.5 96 62.5
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 7.1e-23 110.5 97 63.9
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 7.1e-23 110.5 104 59.6
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 7.1e-23 110.5 106 58.5
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 9.2e-23 110.2 106 57.5
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 1.2e-22 109.8 85 67.1
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 1.2e-22 109.8 106 58.5
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 1.2e-22 109.8 100 59.0
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 1.6e-22 109.4 94 64.9
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 1.6e-22 109.4 94 64.9
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 1.6e-22 109.4 94 64.9
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 1.6e-22 109.4 96 58.3
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 1.6e-22 109.4 106 56.6
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 1.6e-22 109.4 95 64.2
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 2.1e-22 109.0 103 62.1
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 2.7e-22 108.6 96 61.5
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 2.7e-22 108.6 97 60.8
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 2.7e-22 108.6 76 71.1
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 2.7e-22 108.6 106 58.5
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 3.5e-22 108.2 97 58.8
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 4.6e-22 107.8 97 60.8
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 4.6e-22 107.8 97 60.8
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 4.6e-22 107.8 103 57.3
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 6.0e-22 107.5 102 55.9
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 7.8e-22 107.1 96 60.4
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 7.8e-22 107.1 84 64.3
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 7.8e-22 107.1 105 54.3
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 1.0e-21 106.7 100 59.0
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 1.3e-21 106.3 103 59.2
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 1.3e-21 106.3 103 56.3
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 1.7e-21 105.9 102 56.9
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 2.3e-21 105.5 97 59.8
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 2.3e-21 105.5 97 59.8
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 2.3e-21 105.5 97 58.8
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 3.0e-21 105.1 104 55.8
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 3.0e-21 105.1 96 56.2
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 5.1e-21 104.4 96 60.4
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 5.1e-21 104.4 97 59.8
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 5.1e-21 104.4 74 70.3
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 1.1e-20 103.2 105 51.4
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 1.5e-20 102.8 81 66.7
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 2.5e-20 102.1 105 57.1
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 3.3e-20 101.7 71 71.8
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 3.3e-20 101.7 98 57.1
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 4.3e-20 101.3 91 61.5
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 5.6e-20 100.9 95 57.9
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 5.6e-20 100.9 87 57.5
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 7.3e-20 100.5 104 53.8
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 7.3e-20 100.5 79 67.1
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 9.5e-20 100.1 79 67.1
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 9.5e-20 100.1 79 67.1
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 9.5e-20 100.1 76 68.4
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 1.2e-19 99.8 99 60.6
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 1.6e-19 99.4 97 60.8
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 1.6e-19 99.4 97 60.8
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 1.6e-19 99.4 97 60.8
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 1.6e-19 99.4 107 54.2
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 2.8e-19 98.6 100 63.0
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 4.7e-19 97.8 76 63.2
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 8.1e-19 97.1 96 56.2
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.4e-18 96.3 104 52.9
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 1.4e-18 96.3 97 58.8
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 1.8e-18 95.9 100 53.0
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 1.8e-18 95.9 75 68.0
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 2.3e-18 95.5 76 67.1
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 2.3e-18 95.5 76 67.1
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 2.3e-18 95.5 99 55.6
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 3.1e-18 95.1 97 58.8
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 3.1e-18 95.1 97 58.8
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 4.0e-18 94.7 76 65.8
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 5.2e-18 94.4 87 56.3
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 8.9e-18 93.6 87 57.5
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 3.4e-17 91.7 102 50.0
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 7.6e-17 90.5 75 72.0
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 4.9e-16 87.8 97 51.5
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 8.3e-16 87.0 104 48.1
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 8.3e-16 87.0 81 61.7
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 3.2e-15 85.1 75 58.7
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 3.2e-15 85.1 75 54.7
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 1.3e-13 79.7 80 55.0
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 1.2e-11 73.2 83 48.2
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 1.6e-11 72.8 79 51.9
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 1.6e-11 72.8 79 51.9
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 2.8e-11 72.0 86 53.5
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 6.2e-11 70.9 77 50.6
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 1.8e-10 69.3 64 53.1
Mapoly0033s0168 Marchantia polymorpha HOM05D000087 ORTHO05D255883 7.6e-09 63.9 72 52.8
Nitab4.5_0002302g0110 Nicotiana tabacum HOM05D003613 ORTHO05D004055 2.4e-07 58.9 62 56.5
Aqoxy1G01707 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 4.6e-06 54.7 49 53.1


User provided reference genes

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