Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 0.0e+00 1778.8 1039 100.0
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 0.0e+00 1384.4 1044 80.2
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 0.0e+00 1361.7 1045 77.8
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 0.0e+00 1357.0 1045 77.5
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1134.4 1069 62.1
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1117.4 1072 63.1
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1086.2 1050 60.5
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 0.0e+00 1085.9 1053 61.1
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1083.2 1050 60.4
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1078.2 1047 60.4
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 7.1e-312 1074.7 1049 59.9
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 1.4e-311 1072.8 1077 61.7
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 6.4e-311 1070.8 1066 60.5
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 1.7e-308 1062.8 1048 63.2
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 8.6e-308 1060.4 1040 60.4
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 9.5e-307 1057.0 1081 59.3
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 6.2e-306 1054.3 1066 61.3
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 2.6e-304 1048.9 1069 60.7
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 2.9e-303 1045.4 1068 59.0
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 3.7e-303 1045.0 1091 58.8
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 3.2e-302 1042.0 1039 60.9
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 9.2e-302 1040.4 1041 63.0
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 2.0e-301 1039.3 1034 62.0
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 8.6e-300 1033.9 1055 64.0
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 4.7e-298 1028.1 1092 60.3
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 6.2e-298 1027.7 1044 58.1
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 1.8e-297 1026.2 1030 60.1
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 1.8e-297 1026.2 1060 59.2
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.3e-297 1025.8 1075 56.7
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 3.1e-297 1025.4 1036 59.7
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 5.8e-296 1021.1 1041 60.2
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 7.5e-296 1020.8 1042 59.6
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 3.7e-295 1018.5 1078 58.4
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 3.2e-294 1015.4 1027 60.2
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 4.1e-294 1015.0 1052 60.9
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 6.0e-293 1011.1 934 62.2
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 2.3e-292 1009.2 1069 58.3
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 3.6e-290 1001.9 1034 60.3
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.3e-289 999.2 1038 59.4
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 3.1e-289 998.8 908 62.0
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 5.8e-288 994.6 927 62.4
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.3e-287 993.4 1054 58.0
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 1.3e-287 993.4 1024 57.3
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 8.4e-287 990.7 1077 58.0
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 1.4e-286 989.9 1061 58.3
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 2.4e-286 989.2 913 62.1
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 5.4e-286 988.0 1066 56.4
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 2.1e-285 986.1 1044 60.3
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 5.1e-284 981.5 889 61.2
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 8.6e-284 980.7 1044 55.9
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 1.5e-283 979.9 1086 56.3
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 2.8e-282 975.7 916 61.0
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 2.4e-281 972.6 1061 55.9
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 4.0e-281 971.8 1029 57.8
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 1.2e-280 970.3 1077 58.1
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 2.0e-280 969.5 915 61.6
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 3.8e-279 965.3 1041 54.8
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 4.9e-279 964.9 1040 57.2
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 1.0e-276 957.2 1111 54.3
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 5.1e-276 954.9 1011 55.1
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 6.6e-276 954.5 1075 56.3
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 1.1e-275 953.7 906 62.4
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 1.1e-275 953.7 1048 58.5
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 1.5e-275 953.4 1041 55.0
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 7.3e-275 951.0 1063 54.1
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.3e-274 950.3 916 59.9
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 1.3e-274 950.3 1029 57.1
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 4.8e-274 948.3 1051 54.2
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 6.2e-274 948.0 1210 52.3
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 5.3e-273 944.9 1038 56.3
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 3.8e-271 938.7 1071 54.9
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 6.4e-271 937.9 1068 54.7
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 4.6e-269 931.8 902 59.5
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 6.6e-268 927.9 1034 54.9
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 8.7e-268 927.5 885 59.3
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.3e-266 923.7 1081 53.3
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.6e-266 923.3 1065 54.3
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 2.1e-266 922.9 1045 54.4
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 3.6e-266 922.2 1059 56.5
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 6.2e-266 921.4 1054 54.0
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 2.4e-265 919.5 1085 51.9
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 2.6e-264 916.0 878 59.1
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 3.4e-264 915.6 924 58.4
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 1.9e-262 909.8 1038 56.6
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 6.0e-261 904.8 597 80.6
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 7.9e-261 904.4 1062 53.7
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 1.4e-257 893.6 1046 53.5
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 6.9e-257 891.3 858 57.6
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 2.0e-256 889.8 912 57.6
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 8.7e-252 874.4 1053 51.6
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 6.9e-249 864.8 1064 53.9
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 1.1e-246 857.4 1071 50.9
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 1.4e-246 857.1 899 57.0
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 9.7e-243 844.3 871 57.1
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 6.9e-241 838.2 1054 48.8
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 5.5e-238 828.6 826 61.1
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 5.7e-235 818.5 1083 50.7
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 3.4e-232 809.3 1079 49.4
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 1.9e-230 803.5 1028 52.5
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 2.9e-223 779.6 1100 47.3
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 4.4e-219 765.8 719 62.7
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.1e-217 759.6 624 65.5
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 4.3e-190 669.5 852 47.8
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.6e-189 666.4 627 60.3
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 3.9e-183 646.4 1038 44.3
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 3.1e-180 636.7 773 47.0
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 1.3e-178 631.3 784 46.9
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 6.8e-172 609.0 910 42.0
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 2.3e-167 594.0 578 58.5
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 3.6e-165 586.6 494 67.0
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 4.0e-156 556.6 757 47.6
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.1e-152 544.3 915 41.3
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 4.5e-147 526.6 851 39.8
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 5.6e-142 509.6 595 53.4
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 4.6e-136 490.0 665 46.3
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 3.7e-133 480.3 866 37.4
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 8.7e-127 459.1 371 67.9
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 6.1e-104 383.3 783 36.0
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.1e-96 358.2 371 55.3
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 1.6e-83 315.5 647 37.1
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.1e-76 292.7 308 51.3
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 1.7e-74 285.4 632 34.2
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 5.6e-73 280.4 432 41.9
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 2.6e-62 245.0 745 28.3
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 1.0e-58 233.0 215 60.0
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 4.7e-56 224.2 255 54.1
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 7.6e-46 190.3 193 54.9
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.1e-41 176.4 236 48.3
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 1.6e-40 172.6 102 80.4
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 1.0e-34 153.3 172 51.7
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 9.6e-33 146.7 176 50.6
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 3.1e-31 141.7 121 65.3
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 1.9e-28 132.5 132 56.1
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 1.4e-20 106.3 79 63.3
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 1.9e-20 105.9 51 100.0
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 1.0e-18 100.1 58 79.3
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 3.3e-17 95.1 81 60.5
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 1.9e-12 79.3 245 38.8
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.7e-08 66.2 38 81.6
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 6.3e-08 64.3 45 64.4
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 6.3e-08 64.3 45 64.4
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 6.3e-08 64.3 224 35.3
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 2.4e-07 62.4 45 62.2
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 2.4e-07 62.4 45 62.2
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 2.4e-07 62.4 81 50.6
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 5.3e-07 61.2 45 60.0
Psat4g213600 Pisum sativum HOM05D002050 ORTHO05D001949 4.5e-06 58.2 48 58.3
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 4.5e-06 58.2 227 36.6
Psat1g211080 Pisum sativum HOM05D000001 ORTHO05D322910 7.7e-06 57.4 48 56.2


User provided reference genes

Program Settings