Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G125800 Theobroma cacao HOM05D008181 ORTHO05D010459 2.9e-102 375.2 180 100.0
Thecc.02G036800 Theobroma cacao HOM05D008181 ORTHO05D010459 9.0e-88 327.0 180 89.4
Thecc.10G054600 Theobroma cacao HOM05D008181 ORTHO05D010459 2.4e-85 318.9 180 86.7
Thecc.04G033000 Theobroma cacao HOM05D008181 ORTHO05D010459 6.5e-78 294.3 178 79.2
Thecc.05G178300 Theobroma cacao HOM05D008181 ORTHO05D010459 3.0e-75 285.4 155 89.7
Thecc.02G255800 Theobroma cacao HOM05D008181 ORTHO05D010459 5.9e-71 271.2 177 74.6
Thecc.05G225100 Theobroma cacao HOM05D008181 ORTHO05D010459 1.7e-70 269.6 155 82.6
Thecc.03G161900 Theobroma cacao HOM05D008181 ORTHO05D010459 1.2e-68 263.5 147 86.4
Thecc.09G272400 Theobroma cacao HOM05D008181 ORTHO05D010459 1.3e-67 260.0 147 85.7
Thecc.05G196700 Theobroma cacao HOM05D008181 ORTHO05D010459 3.3e-58 228.8 135 82.2
Thecc.09G213300 Theobroma cacao HOM05D008181 ORTHO05D010459 3.4e-55 218.8 128 81.2
Thecc.10G115900 Theobroma cacao HOM05D008181 ORTHO05D010459 1.8e-48 196.4 128 71.9
Thecc.06G009500 Theobroma cacao HOM05D008181 ORTHO05D010459 4.5e-47 191.8 127 73.2
Thecc.10G099400 Theobroma cacao HOM05D008181 ORTHO05D010459 4.7e-44 181.8 108 78.7
Thecc.06G088800 Theobroma cacao HOM05D008181 ORTHO05D010459 2.6e-42 176.0 104 81.7
Thecc.01G399000 Theobroma cacao HOM05D008181 ORTHO05D010459 1.4e-40 170.2 95 86.3
Thecc.04G148800 Theobroma cacao HOM05D008181 ORTHO05D010459 1.1e-37 160.6 92 81.5
Thecc.09G246600 Theobroma cacao HOM05D008181 ORTHO05D010459 3.2e-37 159.1 103 70.9
Thecc.01G188500 Theobroma cacao HOM05D008181 ORTHO05D010459 4.0e-35 152.1 93 77.4
Thecc.02G200300 Theobroma cacao HOM05D008181 ORTHO05D010459 8.3e-33 144.4 85 76.5
Thecc.08G140100 Theobroma cacao HOM05D008181 ORTHO05D010459 9.1e-32 141.0 82 79.3
Thecc.09G199400 Theobroma cacao HOM05D008181 ORTHO05D010459 1.1e-24 117.5 72 76.4
Thecc.02G138000 Theobroma cacao HOM05D008181 ORTHO05D010459 2.3e-19 99.8 51 90.2
Thecc.05G125900 Theobroma cacao HOM05D008181 ORTHO05D010459 6.8e-19 98.2 69 69.6
Thecc.07G103000 Theobroma cacao HOM05D008181 ORTHO05D021025 5.7e-18 95.1 160 35.0
Thecc.06G084900 Theobroma cacao HOM05D008181 ORTHO05D010459 4.6e-15 85.5 127 37.8
Thecc.02G178200 Theobroma cacao HOM05D008181 ORTHO05D021025 5.9e-15 85.1 93 39.8
Thecc.02G219700 Theobroma cacao HOM05D008181 ORTHO05D021025 9.5e-13 77.8 98 38.8
Thecc.08G166700 Theobroma cacao HOM05D008181 ORTHO05D010459 3.6e-12 75.9 87 51.7
Thecc.02G184700 Theobroma cacao HOM05D008181 ORTHO05D021025 1.1e-11 74.3 87 41.4
SGA_v2.0_scaffold365G50016 Striga asiatica HOM05D011572 ORTHO05D006517 3.4e-10 69.3 154 31.2
SGA_v2.0_scaffold206G41802 Striga asiatica HOM05D011572 ORTHO05D006517 4.4e-10 68.9 154 31.2
SGA_v2.0_scaffold41G15869 Striga asiatica HOM05D011572 ORTHO05D006517 5.8e-10 68.6 154 31.2
RcHm_v2.0_Chr2g0104761 Rosa chinensis HOM05D000529 ORTHO05D000472 1.3e-09 67.4 154 27.3
SGA_v2.0_scaffold22G09842 Striga asiatica HOM05D011572 ORTHO05D006517 2.2e-09 66.6 153 31.4
SGA_v2.0_scaffold12G06313 Striga asiatica HOM05D011572 ORTHO05D006517 3.2e-08 62.8 146 28.1
CsaV3_2G012010 Cucumis sativus L. HOM05D010240 ORTHO05D011271 7.0e-08 61.6 156 26.9
CANSAT64G2290 Cannabis sativa HOM05D008058 ORTHO05D010564 1.0e-06 57.8 175 24.6
CANSAT56G1907 Cannabis sativa HOM05D008058 ORTHO05D010564 1.3e-06 57.4 167 24.0
SalBow1G5610 Salvia bowleyana HOM05D010599 ORTHO05D006517 1.3e-06 57.4 140 28.6
Thecc.08G200000 Theobroma cacao HOM05D008181 ORTHO05D021025 2.3e-06 56.6 96 29.2
MELO3C033961.2 Cucumis melo HOM05D010240 ORTHO05D011271 3.9e-06 55.8 127 27.6
SalBow1G7517 Salvia bowleyana HOM05D010599 ORTHO05D006517 6.6e-06 55.1 151 27.2
Thecc.09G121600 Theobroma cacao HOM05D008181 ORTHO05D010459 6.6e-06 55.1 41 63.4
CANSAT01G1382 Cannabis sativa HOM05D008058 ORTHO05D010564 8.6e-06 54.7 155 25.2


User provided reference genes

Program Settings