Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1894.0 983 100.0
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1731.5 989 90.6
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1698.7 989 88.4
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1674.8 989 87.5
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1665.2 989 87.1
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1621.7 961 87.2
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1585.5 992 83.6
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1557.0 990 80.5
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1551.6 993 80.2
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1525.8 990 80.1
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1524.6 990 79.2
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1511.9 992 77.6
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1506.5 969 80.4
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1503.4 990 77.0
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1500.7 990 77.3
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1498.4 993 77.2
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1493.8 989 77.9
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1493.4 990 77.4
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1486.5 991 76.4
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1482.2 990 76.6
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1481.1 990 76.5
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1479.9 995 76.9
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1478.0 990 76.4
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1476.8 991 75.2
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1475.7 990 75.2
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1475.7 1014 76.0
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1475.3 990 77.4
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1475.3 991 75.1
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1472.2 990 76.7
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1472.2 993 76.4
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1470.7 990 77.2
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1468.8 990 76.7
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1467.2 990 75.4
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1465.3 989 75.7
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1464.9 979 75.4
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1461.8 979 75.3
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1458.4 991 76.1
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1458.4 992 75.8
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1453.3 1004 75.4
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1453.0 990 74.6
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1451.8 992 75.4
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1449.5 991 75.5
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1448.7 990 75.5
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1446.4 990 76.6
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1445.3 989 75.6
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1443.7 991 74.3
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1437.6 990 73.9
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1435.6 990 74.2
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1434.9 963 77.1
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1430.6 991 74.4
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1429.1 994 74.5
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1428.7 992 73.6
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1428.3 991 73.2
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1427.9 991 74.7
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1427.5 996 73.6
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1426.4 996 75.1
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1426.0 992 73.3
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1425.6 992 74.8
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1425.2 990 72.9
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1423.7 969 75.7
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1421.4 1074 69.2
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1421.4 992 73.8
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1420.6 985 73.6
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1419.8 989 72.8
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1419.4 987 72.5
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1417.5 989 73.5
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1417.1 988 74.4
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1411.4 989 73.5
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1411.0 989 72.8
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1408.7 989 72.7
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1406.7 993 73.7
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1404.0 990 72.7
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1404.0 991 73.3
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1398.3 991 72.6
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1389.0 960 73.0
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1385.9 993 72.2
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1380.2 995 71.3
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1378.2 962 74.3
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1377.5 990 73.0
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1377.5 995 71.2
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1377.1 1004 70.3
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1375.1 995 71.0
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1374.0 994 71.1
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1367.1 995 71.1
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1365.5 992 71.1
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1361.7 993 71.4
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1355.9 990 71.7
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1355.5 897 76.9
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1349.0 980 70.9
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1349.0 980 70.9
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1345.1 994 70.3
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1341.6 998 69.4
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1340.5 918 75.8
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1332.4 1024 68.5
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1312.0 992 69.1
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1298.9 989 68.0
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1283.9 939 71.6
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1264.2 963 68.8
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1219.5 906 71.9
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1218.4 971 63.5
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1192.6 862 73.0
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1175.2 991 60.8
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1157.1 997 62.9
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 1.5e-306 1056.2 910 63.1
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 2.9e-305 1052.0 724 75.7
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 2.5e-293 1012.3 992 54.4
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 1.4e-280 969.9 999 52.3
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 7.9e-279 964.1 999 52.4
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 3.9e-278 961.8 993 49.7
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 1.3e-276 956.8 999 49.9
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 1.8e-270 936.4 999 51.1
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 4.1e-267 925.2 842 58.6
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 7.7e-266 921.0 611 76.4
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.4e-262 910.2 598 77.1
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 2.9e-249 865.9 976 46.5
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 1.1e-248 864.0 743 61.0
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 1.5e-248 863.6 607 73.8
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 5.4e-235 818.5 806 53.2
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 3.7e-212 742.7 1080 38.8
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 5.6e-208 728.8 908 43.0
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 1.2e-189 667.9 427 79.6
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 5.7e-144 516.2 315 81.9
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 3.1e-142 510.4 304 83.6
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 3.2e-139 500.4 356 71.9
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 9.2e-118 429.1 1190 28.9
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.1e-90 338.2 264 66.3
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.1e-90 338.2 264 66.3
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 1.5e-67 262.3 1074 25.7
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 2.7e-53 214.9 239 50.2
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 3.4e-40 171.4 933 23.7
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 9.1e-33 146.7 122 65.6
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 2.5e-30 138.7 145 52.4
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 2.2e-26 125.6 109 59.6
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 2.8e-26 125.2 144 50.0
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 1.0e-20 106.7 90 63.3
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 5.9e-16 90.9 64 71.9
Sabra01G0142500 Salix brachista HOM05D005576 ORTHO05D007010 2.7e-08 65.5 49 65.3
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 1.5e-06 59.7 45 68.9
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 1.5e-06 59.7 45 68.9


User provided reference genes

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