Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G121000 Theobroma cacao HOM05D008318 ORTHO05D010481 4.9e-61 237.7 124 100.0
COL.COLO4_30750 Corchorus olitorius HOM05D008318 ORTHO05D010481 9.7e-49 196.8 126 85.7
QL05p004216 Quercus lobata HOM05D008318 ORTHO05D010481 5.0e-45 184.5 124 79.0
CiPaw.02G135200 Carya illinoinensis HOM05D008318 ORTHO05D010481 2.5e-44 182.2 122 78.7
Potri.001G168400 Populus trichocarpa HOM05D008318 ORTHO05D010481 2.5e-41 172.2 128 74.2
Gohir.A06G144300 Gossypium hirsutum HOM05D008318 ORTHO05D010481 4.3e-41 171.4 124 74.2
Gohir.D06G150000 Gossypium hirsutum HOM05D008318 ORTHO05D010481 7.4e-41 170.6 126 75.4
Gorai.010G175100 Gossypium raimondii HOM05D008318 ORTHO05D010481 7.4e-41 170.6 124 75.0
Manes.11G019700 Manihot esculenta HOM05D008318 ORTHO05D010481 9.7e-41 170.2 132 72.0
Potri.003G065900 Populus trichocarpa HOM05D008318 ORTHO05D010481 3.1e-39 165.2 120 74.2
Sabra01G0142200 Salix brachista HOM05D008318 ORTHO05D010481 3.1e-39 165.2 124 72.6
Haze_16036 Corylus avellana HOM05D008318 ORTHO05D010481 3.4e-38 161.8 109 78.0
Ciclev10026763m.g Citrus clementina HOM05D008318 ORTHO05D010481 1.7e-37 159.5 129 66.7
Cfa003529 Carpinus fangiana HOM05D008318 ORTHO05D010481 2.2e-37 159.1 125 71.2
Lj3g0007896 Lotus japonicus HOM05D008318 ORTHO05D010481 2.9e-37 158.7 122 65.6
Glyma.07G039500 Glycine max HOM05D008318 ORTHO05D010481 1.9e-36 156.0 123 70.7
FvH4_6g34840 Fragaria vesca HOM05D008318 ORTHO05D010481 7.2e-36 154.1 130 66.2
RcHm_v2.0_Chr2g0145711 Rosa chinensis HOM05D008318 ORTHO05D010481 7.2e-36 154.1 129 66.7
Eucgr.J02810 Eucalyptus grandis HOM05D008318 ORTHO05D010481 9.4e-36 153.7 126 65.1
TAR383G0433 Trochodendron aralioides HOM05D008318 ORTHO05D010481 3.9e-34 148.3 125 68.0
Ca_23388_v3 Cicer arietinum L. HOM05D008318 ORTHO05D010481 1.1e-33 146.7 124 66.1
MD09G1181800 Malus domestica HOM05D008318 ORTHO05D010481 1.1e-33 146.7 130 61.5
Ah.08g216830 Amaranthus hybridus HOM05D008318 ORTHO05D010481 3.3e-33 145.2 125 66.4
Psat4g174720 Pisum sativum HOM05D008318 ORTHO05D010481 7.4e-33 144.1 129 65.9
Dinv20430 Davidia involucrata HOM05D008318 ORTHO05D010481 1.7e-32 142.9 124 66.1
Prupe.3G039900 Prunus persica HOM05D008318 ORTHO05D010481 1.7e-32 142.9 128 63.3
Oeu011091.1 Olea europaea HOM05D008318 ORTHO05D010481 2.2e-32 142.5 124 62.9
Lalb_Chr25g0281471 Lupinus albus HOM05D008318 ORTHO05D010481 2.8e-32 142.1 123 62.6
Nitab4.5_0007255g0050 Nicotiana tabacum HOM05D008318 ORTHO05D010481 2.4e-31 139.0 126 61.9
TPR.G36619 Trifolium pratense HOM05D008318 ORTHO05D010481 4.1e-31 138.3 126 63.5
Medtr8g020870 Medicago truncatula HOM05D008318 ORTHO05D010481 5.3e-31 137.9 124 62.9
Rhsim12G0209900 Rhododendron simsii HOM05D008318 ORTHO05D010481 7.0e-31 137.5 120 63.3
Sc15g0000380 Simmondsia chinensis HOM05D008318 ORTHO05D010481 1.2e-30 136.7 124 61.3
Solyc03g123380.1 Solanum lycopersicum HOM05D008318 ORTHO05D010481 2.0e-30 136.0 126 61.9
Hma1.2p1_0291F.1_g115060 Hydrangea macrophylla HOM05D008318 ORTHO05D010481 2.6e-30 135.6 128 58.6
Nn8g38638 Nelumbo nucifera HOM05D008318 ORTHO05D010481 1.3e-29 133.3 114 59.6
Sopen03g041160 Solanum pennellii HOM05D008318 ORTHO05D010481 1.3e-29 133.3 125 59.2
VMungo0331G0642 Vigna mungo HOM05D008318 ORTHO05D010481 5.0e-29 131.3 129 59.7
FAN14G5086 Fragaria x ananassa HOM05D008318 ORTHO05D010481 6.5e-29 131.0 112 65.2
FAN09G4084 Fragaria x ananassa HOM05D008318 ORTHO05D010481 1.5e-28 129.8 112 66.1
Aqoxy1G00205 Aquilegia oxysepala HOM05D008318 ORTHO05D010481 2.5e-28 129.0 127 61.4
CAN.G668.44 Capsicum annuum HOM05D008318 ORTHO05D010481 2.5e-28 129.0 127 57.5
Oeu000415.1 Olea europaea HOM05D008318 ORTHO05D010481 7.2e-28 127.5 106 65.1
Atru.chr1.3996 Acer truncatum HOM05D008318 ORTHO05D010481 6.1e-27 124.4 122 61.5
Actinidia27735 Actinidia chinensis HOM05D008318 ORTHO05D010481 4.0e-26 121.7 99 65.7
PGSC0003DMG400014028 Solanum tuberosum HOM05D008318 ORTHO05D010481 4.0e-26 121.7 126 57.1
CsaV3_UNG227960 Cucumis sativus L. HOM05D008318 ORTHO05D010481 5.2e-26 121.3 123 56.9
Actinidia26824 Actinidia chinensis HOM05D008318 ORTHO05D010481 6.7e-26 120.9 99 65.7
ClCG07G014110 Citrullus lanatus HOM05D008318 ORTHO05D010481 1.1e-25 120.2 123 58.5
Phvul.010G129200 Phaseolus vulgaris HOM05D008318 ORTHO05D010481 2.0e-25 119.4 123 52.8
MELO3C025802.2 Cucumis melo HOM05D008318 ORTHO05D010481 1.1e-23 113.6 123 54.5
Sed0008648 Sechium edule HOM05D008318 ORTHO05D010481 4.1e-23 111.7 123 55.3
Lsat_1_v5_gn_4_93140 Lactuca sativa HOM05D008318 ORTHO05D010481 2.0e-22 109.4 124 50.0
DCAR_026413 Daucus carota HOM05D008318 ORTHO05D010481 3.5e-22 108.6 131 51.9
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 4.5e-22 108.2 102 60.8
Actinidia25326 Actinidia chinensis HOM05D008318 ORTHO05D010481 2.5e-20 102.4 93 59.1
EL10Ac7g16416 Beta vulgaris HOM05D008318 ORTHO05D010481 5.5e-20 101.3 91 61.5
Aa31LG8G1250 Aethionema arabicum HOM05D008318 ORTHO05D010481 3.6e-19 98.6 129 45.7
SGA_v2.0_scaffold71G23850 Striga asiatica HOM05D008318 ORTHO05D010481 8.0e-19 97.4 120 52.5
MSTRG.10951 Avicennia marina HOM05D008318 ORTHO05D010481 8.8e-18 94.0 120 50.0
Manes.04G145300 Manihot esculenta HOM05D008318 ORTHO05D010481 1.7e-16 89.7 70 70.0


User provided reference genes

Program Settings