Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 1.6e-74 282.7 144 100.0
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 2.5e-56 222.2 144 79.9
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 3.4e-53 211.8 145 75.2
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 7.5e-53 210.7 145 74.5
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 1.1e-51 206.8 145 73.8
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 1.4e-51 206.5 145 74.5
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 1.4e-51 206.5 120 83.3
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 3.5e-50 201.8 144 72.2
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 4.3e-48 194.9 145 69.0
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 3.6e-47 191.8 147 70.1
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 1.1e-46 190.3 146 67.8
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 4.0e-46 188.3 147 68.7
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 8.9e-46 187.2 148 66.2
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 8.9e-46 187.2 145 66.9
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 1.2e-45 186.8 145 68.3
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 2.0e-45 186.0 144 66.0
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 5.8e-45 184.5 169 60.9
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 5.8e-45 184.5 145 69.0
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 7.5e-45 184.1 147 70.1
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 1.3e-44 183.3 146 65.8
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 8.3e-44 180.6 150 68.7
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 2.4e-43 179.1 146 64.4
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 1.2e-42 176.8 145 67.6
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 2.1e-42 176.0 148 65.5
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 3.5e-42 175.3 147 66.0
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 6.0e-42 174.5 145 67.6
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 6.0e-42 174.5 148 62.2
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 6.0e-42 174.5 148 62.2
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.3e-41 172.6 148 61.5
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 3.0e-41 172.2 143 65.7
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 3.0e-41 172.2 148 62.2
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 8.6e-41 170.6 148 60.1
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 3.3e-40 168.7 149 61.1
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 4.3e-40 168.3 148 62.2
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 5.6e-40 167.9 150 61.3
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 9.5e-40 167.2 150 61.3
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 2.1e-39 166.0 145 67.6
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 2.1e-39 166.0 147 68.0
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 3.6e-39 165.2 145 64.1
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 3.6e-39 165.2 160 60.0
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 6.2e-39 164.5 149 60.4
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 1.1e-38 163.7 146 64.4
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 1.4e-38 163.3 144 60.4
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 2.3e-38 162.5 149 59.1
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 2.3e-38 162.5 149 59.1
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 3.1e-38 162.2 145 62.8
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 6.8e-38 161.0 148 60.8
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 1.2e-37 160.2 147 64.6
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 2.6e-37 159.1 152 59.2
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 2.6e-37 159.1 148 56.8
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 2.6e-37 159.1 147 63.9
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 5.8e-37 157.9 151 57.6
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 7.5e-37 157.5 150 58.0
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 7.5e-37 157.5 152 58.6
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 7.5e-37 157.5 148 60.1
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 7.5e-37 157.5 148 61.5
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 9.9e-37 157.1 149 57.0
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 1.3e-36 156.8 158 61.4
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 1.3e-36 156.8 152 58.6
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 2.9e-36 155.6 149 62.4
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 2.9e-36 155.6 150 58.0
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 3.7e-36 155.2 152 57.9
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 6.4e-36 154.5 152 57.2
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 8.3e-36 154.1 148 63.5
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 1.1e-35 153.7 146 62.3
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 1.9e-35 152.9 156 57.7
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 1.9e-35 152.9 151 60.9
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 3.2e-35 152.1 140 58.6
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 3.2e-35 152.1 146 61.6
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 5.4e-35 151.4 164 56.1
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 1.2e-34 150.2 150 61.3
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 1.2e-34 150.2 150 56.0
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 1.2e-34 150.2 169 53.8
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 2.7e-34 149.1 147 60.5
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 4.6e-34 148.3 148 58.1
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 6.0e-34 147.9 153 56.9
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 5.1e-33 144.8 148 58.1
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 4.3e-32 141.7 152 59.9
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 5.6e-32 141.4 147 59.2
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 7.3e-32 141.0 155 57.4
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 9.5e-32 140.6 146 56.8
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 9.5e-32 140.6 146 54.1
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 1.2e-31 140.2 140 60.0
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 1.6e-31 139.8 130 57.7
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 6.2e-31 137.9 126 56.3
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 1.8e-30 136.3 148 58.1
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 4.4e-29 131.7 149 55.0
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 2.2e-28 129.4 121 58.7
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 2.9e-28 129.0 157 49.0
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 3.8e-28 128.6 143 58.0
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 4.9e-28 128.3 160 50.0
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 6.4e-28 127.9 94 73.4
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 1.1e-27 127.1 146 50.7
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 1.9e-27 126.3 169 49.7
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 3.2e-27 125.6 143 55.9
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 7.1e-27 124.4 160 48.8
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 2.7e-26 122.5 160 47.5
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 2.7e-26 122.5 132 52.3
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 5.1e-25 118.2 145 55.9
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.6e-23 113.2 133 51.1
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 1.4e-22 110.2 123 52.8
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 1.4e-22 110.2 155 45.8
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 1.8e-22 109.8 102 59.8
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 1.2e-21 107.1 147 43.5
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 4.4e-21 105.1 93 58.1
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 2.2e-20 102.8 128 49.2
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 3.8e-20 102.1 129 51.2
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 6.4e-20 101.3 74 70.3
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 9.3e-19 97.4 172 41.3
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 9.3e-19 97.4 92 55.4
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 1.0e-17 94.0 145 50.3
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 3.9e-17 92.0 88 51.1
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 9.6e-16 87.4 93 52.7
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 1.3e-15 87.0 121 46.3
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 8.1e-15 84.3 115 42.6
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 4.0e-14 82.0 109 43.1
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 3.4e-13 79.0 124 41.9
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 9.9e-13 77.4 126 38.9
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 8.4e-12 74.3 95 45.3
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 1.6e-10 70.1 58 58.6
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.3e-09 67.0 47 72.3
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 1.8e-09 66.6 90 44.4
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 3.9e-09 65.5 52 59.6
Oeu011882.1 Olea europaea HOM05D006233 ORTHO05D007247 6.7e-09 64.7 92 44.6
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 1.9e-08 63.2 97 40.2
FAN25G2302 Fragaria x ananassa HOM05D000283 ORTHO05D000358 5.6e-08 61.6 65 50.8
CSS0050070 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D007247 3.7e-07 58.9 40 72.5
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 4.8e-07 58.5 42 69.0
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 6.9e-06 54.7 48 56.2
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 6.9e-06 54.7 101 38.6


User provided reference genes

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