Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 3.9e-66 255.0 163 100.0
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 6.1e-59 231.1 170 90.6
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 2.0e-54 216.1 176 84.7
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.3e-53 213.4 176 83.5
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.7e-53 213.0 176 84.1
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 6.7e-50 201.1 163 79.1
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 4.1e-47 191.8 165 81.2
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 8.5e-45 184.1 195 68.7
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 2.5e-44 182.6 173 75.1
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 5.5e-44 181.4 183 69.4
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 9.4e-44 180.6 187 70.1
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 2.3e-42 176.0 187 69.5
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 2.3e-42 176.0 163 61.3
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.3e-42 176.0 158 68.4
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 2.3e-42 176.0 180 72.2
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 3.0e-42 175.6 175 73.7
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 4.0e-42 175.3 174 68.4
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 6.8e-42 174.5 161 65.8
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 8.8e-42 174.1 158 75.9
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 4.4e-41 171.8 98 90.8
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 7.5e-41 171.0 169 75.1
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 9.7e-41 170.6 170 74.7
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 1.4e-39 166.8 184 68.5
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 5.3e-39 164.9 179 66.5
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 7.0e-39 164.5 185 67.0
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 2.7e-38 162.5 159 72.3
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 4.5e-38 161.8 198 61.1
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 5.9e-38 161.4 183 66.1
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 1.3e-37 160.2 179 65.4
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 5.0e-37 158.3 199 63.8
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 3.2e-36 155.6 190 61.6
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 3.2e-36 155.6 188 62.8
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 4.2e-36 155.2 98 80.6
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 7.2e-36 154.5 168 71.4
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 7.2e-36 154.5 98 79.6
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 1.2e-35 153.7 161 71.4
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 1.2e-35 153.7 190 63.7
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 2.1e-35 152.9 175 61.1
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 2.1e-35 152.9 143 75.5
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 4.7e-35 151.8 200 58.5
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 6.1e-35 151.4 143 66.4
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 1.8e-34 149.8 97 75.3
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 2.3e-34 149.4 154 74.7
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 3.0e-34 149.1 164 57.3
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 5.2e-34 148.3 98 77.6
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 5.2e-34 148.3 98 77.6
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 6.8e-34 147.9 98 76.5
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 6.8e-34 147.9 182 57.7
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 1.2e-33 147.1 194 58.8
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 1.5e-33 146.7 96 75.0
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 1.5e-33 146.7 96 75.0
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 2.0e-33 146.4 98 74.5
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.2e-32 142.9 130 70.8
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 2.2e-32 142.9 192 61.5
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 4.8e-32 141.7 161 65.8
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 4.8e-32 141.7 98 70.4
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 8.3e-32 141.0 98 70.4
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 8.3e-32 141.0 96 74.0
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 8.3e-32 141.0 98 71.4
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 1.1e-31 140.6 96 70.8
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 1.1e-31 140.6 161 60.2
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 1.8e-31 139.8 96 72.9
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 3.1e-31 139.0 93 74.2
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 1.2e-30 137.1 93 73.1
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 2.0e-30 136.3 98 66.3
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 2.0e-30 136.3 195 57.9
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 2.7e-30 136.0 239 49.0
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 3.5e-30 135.6 98 68.4
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 4.5e-30 135.2 98 70.4
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 7.7e-30 134.4 96 66.7
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 1.0e-29 134.0 240 48.3
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 3.8e-29 132.1 242 47.5
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 5.0e-29 131.7 90 70.0
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 6.6e-29 131.3 95 67.4
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 8.6e-29 131.0 85 77.6
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 1.9e-28 129.8 161 46.6
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 9.5e-28 127.5 87 75.9
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 1.6e-27 126.7 87 72.4
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 1.6e-27 126.7 86 73.3
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 4.7e-27 125.2 84 75.0
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 6.8e-26 121.3 91 62.6
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 1.2e-25 120.6 249 40.2
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 2.6e-25 119.4 87 66.7
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 4.4e-25 118.6 208 52.4
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 1.3e-24 117.1 93 60.2
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 3.7e-24 115.5 83 68.7
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 1.1e-23 114.0 99 64.6
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 4.1e-23 112.1 220 47.3
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 7.0e-23 111.3 223 46.6
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 7.0e-23 111.3 141 51.1
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 9.2e-23 110.9 96 58.3
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 4.5e-22 108.6 96 54.2
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 4.5e-22 108.6 96 54.2
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 4.5e-22 108.6 96 54.2
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 5.9e-22 108.2 97 62.9
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 8.6e-21 104.4 96 54.2
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 1.9e-20 103.2 92 52.2
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 1.9e-20 103.2 92 52.2
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 3.3e-20 102.4 99 53.5
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 5.6e-20 101.7 88 65.9
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 5.6e-20 101.7 88 65.9
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 9.5e-20 100.9 181 54.1
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 2.8e-19 99.4 81 65.4
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 5.2e-18 95.1 93 53.8
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 8.9e-18 94.4 80 67.5
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 2.6e-17 92.8 79 64.6
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 4.9e-16 88.6 80 65.0
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 1.4e-15 87.0 143 56.6
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 2.0e-14 83.2 79 55.7
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 4.6e-14 82.0 99 46.5
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 1.0e-13 80.9 89 49.4
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 1.7e-13 80.1 86 51.2
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 2.5e-12 76.3 88 51.1
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 4.3e-12 75.5 56 64.3
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 4.3e-12 75.5 51 68.6
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 4.3e-12 75.5 93 45.2
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 1.4e-10 70.5 68 54.4
Nitab4.5_0002964g0020 Nicotiana tabacum HOM05D006504 ORTHO05D007867 1.2e-09 67.4 123 60.2
Phvul.010G138400 Phaseolus vulgaris HOM05D006504 ORTHO05D007867 2.2e-08 63.2 39 82.1
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 2.9e-08 62.8 98 44.9
Pp3c21_4920 Physcomitrium patens HOM05D006504 ORTHO05D007867 3.2e-07 59.3 90 38.9
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 2.7e-06 56.2 58 46.6
AagrBONN_evm.TU.Sc2ySwM_344.1668 Anthoceros agrestis HOM05D006504 ORTHO05D007867 4.6e-06 55.5 59 42.4
QL05p012199 Quercus lobata HOM05D006504 ORTHO05D007867 4.6e-06 55.5 37 67.6


User provided reference genes

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