Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 0.0e+00 1243.4 636 100.0
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 7.1e-305 1050.0 637 86.0
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 2.2e-298 1028.5 637 83.7
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 4.8e-285 984.2 637 80.8
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 1.1e-260 903.3 637 76.1
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 3.6e-216 755.4 529 75.0
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 4.0e-215 751.9 691 61.9
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 1.7e-213 746.5 639 64.6
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 3.7e-213 745.3 604 65.6
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 4.1e-212 741.9 597 66.2
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 5.4e-212 741.5 653 63.7
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 2.1e-211 739.6 638 63.8
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.0e-210 737.3 655 62.4
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 3.9e-210 735.3 655 62.1
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 3.3e-209 732.3 692 58.7
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 4.7e-208 728.4 510 73.5
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 1.4e-207 726.9 648 61.9
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 9.9e-206 720.7 537 69.8
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 1.7e-205 719.9 641 62.7
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 2.2e-205 719.5 568 66.9
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 1.4e-204 716.8 536 69.4
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 3.2e-204 715.7 661 59.0
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 2.3e-202 709.5 652 60.7
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 3.9e-202 708.8 525 69.9
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 5.1e-202 708.4 691 56.9
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 5.1e-202 708.4 535 68.4
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 1.1e-201 707.2 663 59.3
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 1.1e-201 707.2 663 59.3
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 1.5e-201 706.8 639 60.4
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 3.3e-201 705.7 533 68.9
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 3.3e-201 705.7 603 64.5
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 3.3e-201 705.7 643 61.4
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 9.6e-201 704.1 643 61.3
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 2.6e-198 696.0 592 63.5
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 7.6e-198 694.5 485 71.3
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 1.4e-196 690.3 699 59.2
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 1.6e-195 686.8 519 70.7
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 4.6e-195 685.3 605 62.0
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 7.8e-195 684.5 642 59.8
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 5.1e-194 681.8 488 70.5
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 8.7e-194 681.0 532 66.4
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 1.1e-193 680.6 486 70.6
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 1.1e-193 680.6 532 66.4
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 1.5e-193 680.2 570 64.4
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 2.5e-193 679.5 512 68.6
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 2.5e-193 679.5 630 61.9
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 4.3e-193 678.7 544 66.4
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 5.6e-193 678.3 638 59.4
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 7.3e-193 677.9 493 70.6
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 1.3e-192 677.2 493 69.8
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 1.6e-192 676.8 493 69.8
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 3.6e-192 675.6 529 66.7
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 6.2e-192 674.9 517 67.9
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 6.2e-192 674.9 520 67.9
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 4.0e-191 672.2 492 70.3
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 5.3e-191 671.8 645 60.2
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 1.5e-190 670.2 713 55.1
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 4.4e-190 668.7 503 69.2
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 1.7e-189 666.8 674 57.9
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 1.7e-189 666.8 483 68.7
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 8.4e-189 664.5 567 63.3
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 3.2e-188 662.5 629 59.3
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 7.1e-188 661.4 538 65.2
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 3.5e-187 659.1 649 57.0
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 4.6e-187 658.7 658 59.7
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 3.9e-186 655.6 649 56.7
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 1.1e-185 654.1 520 66.7
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 3.3e-185 652.5 656 57.3
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 5.6e-185 651.7 519 65.9
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 1.4e-183 647.1 527 63.6
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 5.3e-183 645.2 593 59.7
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 2.6e-182 642.9 397 86.6
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 3.4e-182 642.5 463 71.9
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 4.5e-182 642.1 551 64.6
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 4.9e-181 638.6 488 68.2
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 1.1e-180 637.5 482 68.5
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 4.2e-180 635.6 495 67.5
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 4.6e-179 632.1 603 60.2
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.8e-175 620.2 525 61.5
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 1.8e-175 620.2 492 66.1
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 3.1e-175 619.4 497 63.6
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 2.0e-174 616.7 576 57.1
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 5.8e-174 615.1 557 59.6
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.0e-173 614.4 533 64.0
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 1.9e-172 610.1 545 61.8
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 9.3e-172 607.8 491 64.0
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 1.2e-171 607.4 512 62.1
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 7.9e-171 604.7 648 53.5
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 1.3e-170 604.0 557 58.2
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 1.4e-167 594.0 643 56.8
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 1.4e-167 594.0 570 58.1
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 3.1e-167 592.8 504 64.7
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 1.6e-163 580.5 604 55.0
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 1.8e-162 577.0 547 59.6
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 1.1e-161 574.3 392 76.0
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 7.7e-150 535.0 492 58.7
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 1.1e-145 521.2 495 61.0
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 2.6e-142 510.0 383 68.9
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 1.7e-141 507.3 505 54.5
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 2.2e-141 506.9 526 52.9
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 3.8e-141 506.1 414 68.1
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 8.5e-141 505.0 484 55.0
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 1.3e-133 481.1 521 54.9
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 2.5e-132 476.9 309 79.9
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 1.2e-131 474.6 293 82.9
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 9.8e-129 464.9 363 64.5
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 8.8e-122 441.8 483 49.3
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 3.1e-119 433.3 451 54.1
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 2.0e-110 404.1 538 44.4
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.1e-107 394.0 351 60.7
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 6.8e-106 389.0 468 48.5
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 1.5e-105 387.9 358 58.4
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 2.2e-96 357.5 309 64.7
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 2.9e-96 357.1 416 49.5
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 2.9e-96 357.1 481 43.0
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 8.3e-96 355.5 373 53.9
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 4.1e-95 353.2 278 68.3
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 9.2e-87 325.5 326 58.9
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 2.1e-86 324.3 557 38.4
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 5.6e-84 316.2 394 47.0
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 7.3e-84 315.8 371 49.3
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 7.3e-84 315.8 371 49.3
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 5.2e-82 309.7 259 63.7
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 4.4e-81 306.6 283 59.7
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 1.3e-80 305.1 195 80.5
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 1.2e-73 282.0 192 76.6
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 2.9e-72 277.3 191 73.3
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 2.4e-66 257.7 506 37.7
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 3.1e-66 257.3 178 74.2
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 3.2e-63 247.3 287 51.2
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 1.1e-60 238.8 155 81.3
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 1.4e-58 231.9 500 33.0
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 1.2e-57 228.8 241 56.0
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 6.0e-54 216.5 266 45.1
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.2e-51 208.0 244 47.5
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.1e-50 205.7 245 46.9
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 2.0e-49 201.4 157 72.0
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 3.3e-44 184.1 147 68.0
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 5.3e-42 176.8 166 59.0
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 1.5e-41 175.3 108 78.7
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 3.3e-36 157.5 150 62.0
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 1.7e-35 155.2 310 36.5
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.7e-35 155.2 246 39.0
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.8e-35 154.5 241 39.4
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 2.2e-32 144.8 168 48.2
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 1.8e-29 135.2 129 51.2
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 4.4e-28 130.6 259 34.0
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 3.5e-25 120.9 109 56.0
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 3.5e-25 120.9 70 84.3
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 1.2e-22 112.5 253 34.8
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 3.1e-18 97.8 52 96.2
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-16 92.0 152 37.5
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 3.8e-16 90.9 141 40.4
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 1.1e-15 89.4 53 79.2
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.1e-15 89.4 59 76.3
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 1.6e-14 85.5 75 56.0
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 4.7e-14 84.0 85 52.9
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 8.0e-14 83.2 74 58.1
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 5.2e-13 80.5 74 48.6
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 7.5e-12 76.6 45 64.4
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 9.8e-12 76.3 45 64.4
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 9.8e-12 76.3 69 49.3
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 1.7e-11 75.5 49 69.4
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 1.1e-10 72.8 56 58.9
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 3.1e-10 71.2 55 67.3
Glyma.08G248800 Glycine max HOM05D001329 ORTHO05D004946 1.2e-09 69.3 48 79.2
SHI11147 Sapria himalayana HOM05D000105 ORTHO05D000023 4.5e-09 67.4 81 46.9
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 2.9e-08 64.7 52 65.4
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 3.3e-07 61.2 51 58.8
arahy.Tifrunner.gnm1.ann1.4Z5MNN Arachis hypogaea HOM05D001329 ORTHO05D004946 4.7e-06 57.4 40 67.5
AUR62022240 Chenopodium quinoa HOM05D001329 ORTHO05D004946 6.1e-06 57.0 69 37.7


User provided reference genes

Program Settings