Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G101100 Theobroma cacao HOM05D008208 ORTHO05D010143 0.0e+00 1157.5 768 100.0
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 7.5e-200 701.4 796 63.7
Gohir.D10G066500 Gossypium hirsutum HOM05D008208 ORTHO05D010143 5.3e-129 466.1 780 48.2
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 6.7e-124 449.1 786 47.5
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 1.3e-122 444.9 780 44.7
COL.COLO4_30526 Corchorus olitorius HOM05D008208 ORTHO05D010143 3.6e-109 400.2 774 42.9
QL05p019674 Quercus lobata HOM05D008208 ORTHO05D010143 1.7e-55 221.9 843 31.0
Ciclev10025127m.g Citrus clementina HOM05D008208 ORTHO05D010143 8.1e-53 213.0 808 31.2
Manes.11G032600 Manihot esculenta HOM05D008208 ORTHO05D010143 1.4e-41 175.6 791 30.0
Actinidia39131 Actinidia chinensis HOM05D008208 ORTHO05D010143 8.7e-39 166.4 799 30.2
Actinidia09010 Actinidia chinensis HOM05D008208 ORTHO05D010143 1.6e-37 162.2 795 29.6
Lj9A514T51 Lonicera japonica HOM05D008208 ORTHO05D010143 8.1e-37 159.8 766 31.2
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 1.8e-36 158.7 820 26.8
CiPaw.02G145300 Carya illinoinensis HOM05D008208 ORTHO05D010143 2.4e-36 158.3 841 26.9
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 4.9e-34 150.6 828 26.1
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 1.4e-33 149.1 809 30.9
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 2.7e-32 144.8 875 25.8
vmacro17009 Vaccinium macrocarpon HOM05D008208 ORTHO05D010143 1.0e-31 142.9 802 30.8
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 1.1e-30 139.4 810 26.7
CSS0033280 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 8.1e-29 133.3 811 27.1
TAR624G0194 Trochodendron aralioides HOM05D008208 ORTHO05D010143 2.6e-27 128.3 757 30.3
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 3.4e-27 127.9 295 37.6
Prupe.3G057400 Prunus persica HOM05D008208 ORTHO05D010143 4.5e-27 127.5 912 24.2
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 7.1e-25 120.2 879 25.3
Sabra01G0150900 Salix brachista HOM05D008208 ORTHO05D010143 5.6e-22 110.5 749 28.3
MD17G1181700 Malus domestica HOM05D008208 ORTHO05D010143 3.7e-21 107.8 840 24.0
Lj5A52T19 Lonicera japonica HOM05D008208 ORTHO05D010143 1.2e-19 102.8 799 25.0
Oeu002526.1 Olea europaea HOM05D008208 ORTHO05D010143 5.8e-19 100.5 795 25.0
Nn8g39048 Nelumbo nucifera HOM05D008208 ORTHO05D010143 1.6e-16 92.4 798 22.9
Atru.chr1.3545 Acer truncatum HOM05D008208 ORTHO05D010143 2.7e-16 91.7 160 48.1
ClCG07G013360 Citrullus lanatus HOM05D026900 ORTHO05D010143 1.3e-15 89.4 665 25.4
RcHm_v2.0_Chr2g0140811 Rosa chinensis HOM05D008208 ORTHO05D010143 2.3e-15 88.6 597 24.0
Dinv30428 Davidia involucrata HOM05D008208 ORTHO05D010143 5.1e-15 87.4 294 35.0
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 1.6e-13 82.4 971 22.9
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 2.1e-13 82.0 294 31.6
Potri.001G190601 Populus trichocarpa HOM05D008208 ORTHO05D010143 1.8e-12 79.0 369 29.8
MSTRG.11020 Avicennia marina HOM05D008208 ORTHO05D010143 1.5e-11 75.9 403 29.5
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 1.5e-11 75.9 387 27.1
Nn6g35343 Nelumbo nucifera HOM05D008208 ORTHO05D010143 2.0e-11 75.5 837 29.9
MELO3C013005.2 Cucumis melo HOM05D026900 ORTHO05D010143 7.6e-11 73.6 667 26.1
RcHm_v2.0_Chr2g0140801 Rosa chinensis HOM05D008208 ORTHO05D010143 2.9e-10 71.6 217 33.6
Sed0025504 Sechium edule HOM05D026900 ORTHO05D010143 8.4e-10 70.1 689 23.8
CsaV3_3G023500 Cucumis sativus L. HOM05D026900 ORTHO05D010143 4.2e-09 67.8 699 24.6
PGR102G1678 Punica granatum HOM05D008208 ORTHO05D010143 1.6e-08 65.9 217 30.9
Nitab4.5_0006022g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 1.0e-07 63.2 253 31.6
Hund07613 Selenicereus undatus HOM05D008208 ORTHO05D010143 1.8e-07 62.4 330 24.8
HanXRQChr09g0275691 Helianthus annuus HOM05D008208 ORTHO05D010143 3.0e-07 61.6 343 24.2
PGSC0003DMG400002607 Solanum tuberosum HOM05D008208 ORTHO05D010143 6.7e-07 60.5 778 23.0
Sopen03g039910 Solanum pennellii HOM05D008208 ORTHO05D010143 1.9e-06 58.9 811 22.6
Eucgr.F03082 Eucalyptus grandis HOM05D008208 ORTHO05D010143 3.3e-06 58.2 796 24.1
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 3.3e-06 58.2 153 34.0
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 4.3e-06 57.8 78 50.0
DCAR_023083 Daucus carota HOM05D008208 ORTHO05D010143 5.7e-06 57.4 342 27.2
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 7.4e-06 57.0 807 21.9
SGA_v2.0_scaffold265G46060 Striga asiatica HOM05D008208 ORTHO05D010143 7.4e-06 57.0 283 28.6


User provided reference genes

Program Settings