Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 2216.0 1150 100.0
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1822.8 1149 83.0
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1746.9 1153 78.3
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1743.4 1153 78.3
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1655.6 1143 76.7
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1634.0 1092 77.7
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1378.6 1152 63.1
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1363.2 1233 60.8
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1362.8 1164 62.6
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1358.2 1161 63.1
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1341.3 1150 62.9
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1340.5 1160 61.5
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1337.0 1163 61.8
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1334.7 1159 62.3
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1317.0 1168 61.6
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1317.0 1161 60.9
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1310.0 1150 60.4
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1304.3 1156 60.5
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1279.2 1166 59.7
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1278.8 1154 59.6
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1228.0 1165 57.0
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1226.1 1155 58.3
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1210.3 1163 56.5
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1209.9 1162 56.1
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1209.5 1155 57.2
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1164.4 1156 55.4
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1164.4 1152 56.1
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1162.5 1146 55.4
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1162.5 1218 52.8
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1161.0 1160 55.1
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1158.7 1153 55.0
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1155.2 1150 55.0
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 0.0e+00 1139.8 1118 55.7
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1130.5 1150 54.8
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1128.2 1157 53.5
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 0.0e+00 1127.9 1148 53.7
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 0.0e+00 1126.3 1148 53.2
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1125.9 1139 54.5
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1125.2 1159 54.3
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 0.0e+00 1122.1 1152 52.9
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 1117.8 1167 53.9
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 0.0e+00 1115.9 1157 53.6
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1113.2 1161 53.6
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 0.0e+00 1107.8 1161 51.5
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1107.0 1156 54.4
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1102.0 1157 51.7
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1099.3 1154 53.3
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 0.0e+00 1091.3 1102 53.7
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 0.0e+00 1087.8 1154 52.1
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 0.0e+00 1084.7 1163 51.8
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 0.0e+00 1082.8 1234 50.3
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 2.4e-311 1072.4 1146 52.5
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 5.5e-311 1071.2 1155 51.9
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 1.0e-309 1067.0 1071 54.9
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 6.6e-309 1064.3 1149 52.4
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 8.6e-309 1063.9 1155 51.3
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 1.1e-308 1063.5 1157 51.9
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 2.3e-306 1055.8 1158 50.1
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 8.3e-304 1047.3 1158 49.8
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 9.2e-303 1043.9 1102 54.2
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 3.5e-302 1042.0 1141 51.1
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 3.9e-301 1038.5 1154 49.6
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 8.6e-301 1037.3 1151 49.7
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 6.8e-298 1027.7 1156 49.5
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 1.5e-297 1026.5 1142 49.3
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.5e-297 1026.5 1135 50.0
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 2.6e-297 1025.8 1154 49.1
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 1.7e-296 1023.1 1157 49.4
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 2.9e-296 1022.3 1161 49.2
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 2.7e-294 1015.8 1159 49.3
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 7.8e-294 1014.2 1152 49.2
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.5e-292 1010.0 1152 49.1
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 2.4e-290 1002.7 1019 53.1
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 7.3e-284 981.1 1150 48.1
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 1.4e-282 976.9 1104 50.7
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 1.5e-281 973.4 1148 48.2
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.6e-278 963.4 1048 53.0
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.6e-278 963.4 1151 47.1
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 4.6e-278 961.8 1156 47.1
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 2.5e-276 956.1 1139 47.5
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 1.6e-275 953.4 1175 46.1
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 4.0e-274 948.7 1143 47.3
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 1.2e-273 947.2 1042 50.4
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 9.3e-271 937.6 1073 49.1
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 3.0e-261 906.0 1157 45.7
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.2e-256 889.8 951 52.1
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 2.9e-256 889.4 1069 47.3
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 4.9e-256 888.6 1139 45.4
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 4.8e-251 872.1 938 52.1
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 5.3e-250 868.6 1145 44.5
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 4.3e-244 849.0 1164 43.8
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 7.9e-238 828.2 1158 42.4
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 5.0e-232 808.9 1155 42.7
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 1.2e-225 787.7 917 47.0
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 7.6e-172 609.0 1056 38.7
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 6.7e-152 542.7 1200 33.2
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 3.9e-144 516.9 667 43.8
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 6.9e-133 479.6 698 41.5
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 4.5e-132 476.9 1192 30.3
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.7e-131 474.9 525 49.1
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 5.0e-131 473.4 512 52.3
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.2e-126 458.0 438 56.4
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.5e-124 451.8 455 57.4
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 6.1e-113 413.3 335 61.5
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 3.0e-104 384.4 1137 29.1
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 9.1e-101 372.9 447 48.3
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 8.0e-97 359.8 448 47.8
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 6.6e-91 340.1 236 71.6
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 5.0e-75 287.3 1289 24.9
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 5.6e-74 283.9 276 55.1
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 2.3e-72 278.5 232 61.6
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 2.4e-69 268.5 315 52.4
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 7.6e-63 246.9 202 64.9
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 2.7e-60 238.4 155 71.0
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.1e-58 233.0 327 44.3
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 2.6e-55 221.9 180 60.6
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 4.0e-48 198.0 222 49.1
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 1.1e-42 179.9 200 52.5
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.2e-38 165.6 159 54.1
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 1.4e-37 162.9 173 50.9
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.3e-33 149.8 116 65.5
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 5.3e-32 144.4 1268 22.1
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 2.6e-31 142.1 123 59.3
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 1.4e-29 136.3 144 51.4
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 4.2e-29 134.8 96 72.9
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 1.8e-27 129.4 147 47.6
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 1.8e-27 129.4 147 47.6
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 3.3e-26 125.2 180 43.3
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 7.4e-26 124.0 96 67.7
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 7.4e-26 124.0 96 67.7
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 7.4e-26 124.0 170 42.4
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.3e-25 123.2 131 46.6
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 2.8e-25 122.1 119 51.3
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 6.3e-25 120.9 277 32.9
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 9.0e-24 117.1 123 48.8
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 1.7e-22 112.8 137 45.3
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 7.2e-21 107.5 93 60.2
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 6.1e-20 104.4 75 68.0
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 1.1e-16 93.6 63 61.9
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 1.0e-14 87.0 155 33.5
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 2.9e-14 85.5 90 45.6
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 6.5e-14 84.3 55 74.5
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 2.5e-13 82.4 92 48.9
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 4.2e-13 81.6 73 63.0
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 9.4e-13 80.5 103 45.6
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 2.3e-11 75.9 64 62.5
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 2.3e-11 75.9 62 59.7
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 5.1e-11 74.7 68 58.8
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 2.5e-10 72.4 80 51.2
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 6.3e-09 67.8 154 29.9


User provided reference genes

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