Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G097000 Theobroma cacao HOM05D000454 ORTHO05D002637 4.1e-58 228.8 222 100.0
Duzib192G1039 Durio zibethinus HOM05D000454 ORTHO05D002637 1.5e-36 157.1 175 53.7
Dinv30455 Davidia involucrata HOM05D000454 ORTHO05D002637 3.1e-21 106.3 174 66.7
QL05p020771 Quercus lobata HOM05D000454 ORTHO05D002637 4.0e-21 105.9 176 39.2
Aqoxy7G01501 Aquilegia oxysepala HOM05D000454 ORTHO05D002637 1.2e-17 94.4 174 62.6
Atru.chr1.3491 Acer truncatum HOM05D000454 ORTHO05D002637 3.5e-17 92.8 149 71.8
TAR383G0435 Trochodendron aralioides HOM05D000454 ORTHO05D002637 1.1e-15 87.8 174 61.5
Prupe.3G062400 Prunus persica HOM05D000454 ORTHO05D002637 4.3e-15 85.9 175 60.0
Duzib168G0801 Durio zibethinus HOM05D000454 ORTHO05D002637 5.6e-15 85.5 171 64.3
Prupe.3G061800 Prunus persica HOM05D000454 ORTHO05D002637 1.3e-14 84.3 171 59.6
Haze_15818 Corylus avellana HOM05D000454 ORTHO05D002637 1.6e-14 84.0 176 60.2
Nn3g18151 Nelumbo nucifera HOM05D000454 ORTHO05D002637 3.6e-14 82.8 173 61.3
CiPaw.01G233200 Carya illinoinensis HOM05D000454 ORTHO05D002637 4.8e-14 82.4 70 61.4
Potri.001G187600 Populus trichocarpa HOM05D000454 ORTHO05D002637 6.2e-14 82.0 176 61.4
Atru.chr7.2112 Acer truncatum HOM05D000454 ORTHO05D002637 8.1e-14 81.6 174 59.2
QL05p020685 Quercus lobata HOM05D000454 ORTHO05D002637 1.1e-13 81.3 70 64.3
CANSAT56G0237 Cannabis sativa HOM05D000454 ORTHO05D002637 1.4e-13 80.9 70 60.0
Oeu031552.2 Olea europaea HOM05D000454 ORTHO05D002637 1.4e-13 80.9 174 62.1
Hma1.2p1_0659F.1_g197390 Hydrangea macrophylla HOM05D000454 ORTHO05D002637 1.8e-13 80.5 193 57.5
MD17G1186800 Malus domestica HOM05D000454 ORTHO05D002637 2.4e-13 80.1 69 58.0
Prupe.3G061900 Prunus persica HOM05D000454 ORTHO05D002637 2.4e-13 80.1 70 55.7
QL05p020689 Quercus lobata HOM05D000454 ORTHO05D002637 2.4e-13 80.1 70 62.9
QL05p020750 Quercus lobata HOM05D000454 ORTHO05D002637 3.1e-13 79.7 70 62.9
TWI34G0381 Tripterygium wilfordii HOM05D000454 ORTHO05D002637 4.0e-13 79.3 174 59.8
HanXRQChr11g0352041 Helianthus annuus HOM05D000454 ORTHO05D002637 6.9e-13 78.6 175 59.4
Hma1.2p1_1056F.1_g252690 Hydrangea macrophylla HOM05D000454 ORTHO05D002637 9.0e-13 78.2 176 60.2
QL05p020802 Quercus lobata HOM05D000454 ORTHO05D002637 9.0e-13 78.2 68 61.8
CiPaw.01G233300 Carya illinoinensis HOM05D000454 ORTHO05D002637 1.2e-12 77.8 70 61.4
RcHm_v2.0_Chr2g0139911 Rosa chinensis HOM05D000454 ORTHO05D002637 1.5e-12 77.4 70 55.7
Atru.chr7.2100 Acer truncatum HOM05D000454 ORTHO05D002637 2.6e-12 76.6 174 57.5
Atru.chr7.2114 Acer truncatum HOM05D000454 ORTHO05D002637 2.6e-12 76.6 174 57.5
Cfa003673 Carpinus fangiana HOM05D000454 ORTHO05D002637 2.6e-12 76.6 70 57.1
CiPaw.02G147100 Carya illinoinensis HOM05D000454 ORTHO05D002637 2.6e-12 76.6 70 55.7
COL.COLO4_18654 Corchorus olitorius HOM05D000454 ORTHO05D002637 3.4e-12 76.3 173 61.8
Prupe.3G062200 Prunus persica HOM05D000454 ORTHO05D002637 3.4e-12 76.3 176 40.9
QL05p020680 Quercus lobata HOM05D000454 ORTHO05D002637 4.5e-12 75.9 70 60.0
ATR0315G145 Amborella trichopoda HOM05D000454 ORTHO05D002637 5.8e-12 75.5 175 61.1
Lsat_1_v5_gn_1_47140 Lactuca sativa HOM05D000454 ORTHO05D002637 7.6e-12 75.1 175 56.6
Cfa012703 Carpinus fangiana HOM05D000454 ORTHO05D002637 9.9e-12 74.7 202 53.5
CiPaw.01G233400 Carya illinoinensis HOM05D000454 ORTHO05D002637 9.9e-12 74.7 70 54.3
Thecc.06G096900 Theobroma cacao HOM05D000454 ORTHO05D002637 1.3e-11 74.3 69 59.4
FAN05G3697 Fragaria x ananassa HOM05D000454 ORTHO05D002637 2.2e-11 73.6 67 58.2
FAN05G3019 Fragaria x ananassa HOM05D000454 ORTHO05D002637 2.9e-11 73.2 68 54.4
GSVIVG01035638001 Vitis vinifera HOM05D000454 ORTHO05D002637 3.8e-11 72.8 187 58.8
arahy.Tifrunner.gnm1.ann1.2M4JN6 Arachis hypogaea HOM05D000454 ORTHO05D002637 6.4e-11 72.0 69 47.8
arahy.Tifrunner.gnm1.ann1.A9YK01 Arachis hypogaea HOM05D000454 ORTHO05D002637 6.4e-11 72.0 69 47.8
arahy.Tifrunner.gnm1.ann1.VK618R Arachis hypogaea HOM05D000454 ORTHO05D002637 6.4e-11 72.0 69 47.8
VMungo1080G0542 Vigna mungo HOM05D000454 ORTHO05D002637 8.4e-11 71.6 70 47.1
RcHm_v2.0_Chr1g0353591 Rosa chinensis HOM05D000454 ORTHO05D002637 1.1e-10 71.2 68 52.9
RcHm_v2.0_Chr2g0139771 Rosa chinensis HOM05D000454 ORTHO05D002637 1.1e-10 71.2 68 52.9
Sc12g0009600 Simmondsia chinensis HOM05D000454 ORTHO05D002637 1.1e-10 71.2 173 30.6
Lj8C577G8 Lonicera japonica HOM05D000454 ORTHO05D002637 1.4e-10 70.9 171 59.1
Potri.018G042200 Populus trichocarpa HOM05D000454 ORTHO05D002637 1.4e-10 70.9 174 55.7
TPR.G27663 Trifolium pratense HOM05D000454 ORTHO05D002637 1.9e-10 70.5 70 47.1
arahy.Tifrunner.gnm1.ann1.N3KGB9 Arachis hypogaea HOM05D000454 ORTHO05D002637 2.4e-10 70.1 69 46.4
Ciclev10007796m.g Citrus clementina HOM05D000454 ORTHO05D002637 2.4e-10 70.1 174 55.2
Lj8C587G6 Lonicera japonica HOM05D000454 ORTHO05D002637 2.4e-10 70.1 171 59.6
Phvul.005G167300 Phaseolus vulgaris HOM05D000454 ORTHO05D002637 2.4e-10 70.1 70 45.7
Sabra18G0042900 Salix brachista HOM05D000454 ORTHO05D002637 2.4e-10 70.1 172 60.5
TAR626G1687 Trochodendron aralioides HOM05D000454 ORTHO05D002637 2.4e-10 70.1 173 60.7
COL.COLO4_30480 Corchorus olitorius HOM05D000454 ORTHO05D002637 3.2e-10 69.7 67 58.2
FvH4_6g32100 Fragaria vesca HOM05D000454 ORTHO05D002637 3.2e-10 69.7 68 52.9
FAN14G0706 Fragaria x ananassa HOM05D000454 ORTHO05D002637 3.2e-10 69.7 68 52.9
QL05p020655 Quercus lobata HOM05D000454 ORTHO05D002637 3.2e-10 69.7 70 54.3
FvH4_6g32121 Fragaria vesca HOM05D000454 ORTHO05D002637 4.2e-10 69.3 70 50.0
FAN14G0896 Fragaria x ananassa HOM05D000454 ORTHO05D002637 4.2e-10 69.3 70 50.0
FAN09G2279 Fragaria x ananassa HOM05D000454 ORTHO05D002637 5.4e-10 68.9 70 50.0
Sed0022178 Sechium edule HOM05D000454 ORTHO05D002637 5.4e-10 68.9 172 55.8
Lj3g0015079 Lotus japonicus HOM05D000454 ORTHO05D002637 7.1e-10 68.6 70 47.1
TAR636G2176 Trochodendron aralioides HOM05D000454 ORTHO05D002637 7.1e-10 68.6 173 60.1
PGSC0003DMG400004315 Solanum tuberosum HOM05D000454 ORTHO05D002637 1.2e-09 67.8 181 58.0
MBI04_g02616_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 1.6e-09 67.4 69 52.2
GSVIVG01035671001 Vitis vinifera HOM05D000454 ORTHO05D002637 2.1e-09 67.0 175 58.3
Glyma.15G018600 Glycine max HOM05D000454 ORTHO05D002637 3.5e-09 66.2 70 45.7
PGR102G3036 Punica granatum HOM05D000454 ORTHO05D002637 3.5e-09 66.2 71 54.9
Atru.chr1.3486 Acer truncatum HOM05D000454 ORTHO05D002637 4.6e-09 65.9 50 64.0
RcHm_v2.0_Chr2g0139761 Rosa chinensis HOM05D000454 ORTHO05D002637 4.6e-09 65.9 70 48.6
Sed0021062 Sechium edule HOM05D000454 ORTHO05D002637 6.0e-09 65.5 177 55.4
Solyc08g066770.3 Solanum lycopersicum HOM05D000454 ORTHO05D002637 6.0e-09 65.5 179 60.3
DCAR_007717 Daucus carota HOM05D000454 ORTHO05D002637 7.9e-09 65.1 176 62.5
Dinv14254 Davidia involucrata HOM05D000454 ORTHO05D002637 1.0e-08 64.7 174 56.3
Medtr2g101310 Medicago truncatula HOM05D000454 ORTHO05D002637 1.0e-08 64.7 70 41.4
Sopen08g020740 Solanum pennellii HOM05D000454 ORTHO05D002637 1.0e-08 64.7 182 58.2
FvH4_6g32091 Fragaria vesca HOM05D000454 ORTHO05D002637 2.3e-08 63.5 70 47.1
FAN14G5147 Fragaria x ananassa HOM05D000454 ORTHO05D002637 2.3e-08 63.5 70 47.1
Medtr2g101320 Medicago truncatula HOM05D000454 ORTHO05D002637 2.3e-08 63.5 70 42.9
Nn3g18158 Nelumbo nucifera HOM05D000454 ORTHO05D002637 2.3e-08 63.5 70 47.1
PSO782G3005 Papaver somniferum HOM05D000454 ORTHO05D002637 2.3e-08 63.5 68 54.4
Manes.04G132001 Manihot esculenta HOM05D000454 ORTHO05D002637 3.9e-08 62.8 67 46.3
PSO566G0187 Papaver somniferum HOM05D000454 ORTHO05D002637 1.5e-07 60.8 71 49.3
RcHm_v2.0_Chr2g0140011 Rosa chinensis HOM05D000454 ORTHO05D002637 1.5e-07 60.8 69 52.2
Ciclev10007811m.g Citrus clementina HOM05D000454 ORTHO05D002637 1.9e-07 60.5 70 42.9
MBI18_g43125_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 1.9e-07 60.5 69 44.9
ECA248G1005 Erigeron canadensis HOM05D000454 ORTHO05D002637 2.5e-07 60.1 70 45.7
QL05p020666 Quercus lobata HOM05D000454 ORTHO05D002637 2.5e-07 60.1 52 61.5
PGSC0003DMG400012067 Solanum tuberosum HOM05D000454 ORTHO05D002637 2.5e-07 60.1 176 59.7
Cpa.g.sc56.53 Carica papaya HOM05D000454 ORTHO05D002637 3.3e-07 59.7 175 52.6
Cpa.g.sc7.265 Carica papaya HOM05D000454 ORTHO05D002637 3.3e-07 59.7 70 47.1
Ciclev10025077m.g Citrus clementina HOM05D000454 ORTHO05D002637 4.3e-07 59.3 70 58.6
Oeu012195.1 Olea europaea HOM05D000454 ORTHO05D002637 5.6e-07 58.9 70 45.7
THA.LOC104799197 Tarenaya hassleriana HOM05D000454 ORTHO05D002637 5.6e-07 58.9 183 54.6
Sopen08g020730 Solanum pennellii HOM05D000454 ORTHO05D002637 7.4e-07 58.5 172 58.7
Nitab4.5_0000151g0410 Nicotiana tabacum HOM05D000454 ORTHO05D002637 9.6e-07 58.2 70 44.3
Nitab4.5_0000837g0120 Nicotiana tabacum HOM05D000454 ORTHO05D002637 9.6e-07 58.2 70 44.3
MBI04_g02615_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 1.3e-06 57.8 171 54.4
Thecc.09G043600 Theobroma cacao HOM05D000454 ORTHO05D002637 2.1e-06 57.0 70 42.9
Manes.16G072800 Manihot esculenta HOM05D000454 ORTHO05D002637 3.6e-06 56.2 173 54.9
GSVIVG01017031001 Vitis vinifera HOM05D000454 ORTHO05D002637 4.8e-06 55.8 69 46.4
Solyc08g066760.4 Solanum lycopersicum HOM05D000454 ORTHO05D002637 6.2e-06 55.5 69 46.4
Haze_07928 Corylus avellana HOM05D000454 ORTHO05D002637 8.1e-06 55.1 52 53.8
RcHm_v2.0_Chr2g0140001 Rosa chinensis HOM05D000454 ORTHO05D002637 8.1e-06 55.1 69 47.8


User provided reference genes

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