Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 4.8e-51 204.1 99 100.0
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.1e-42 176.4 88 95.5
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 1.4e-42 176.0 99 79.8
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 4.1e-42 174.5 88 94.3
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 4.1e-42 174.5 88 94.3
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 9.1e-42 173.3 99 81.8
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 2.7e-41 171.8 99 81.8
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 1.0e-40 169.9 99 79.8
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.7e-40 169.1 99 79.8
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 1.7e-40 169.1 99 78.8
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 5.0e-40 167.5 99 79.8
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 8.6e-40 166.8 99 79.8
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 8.6e-40 166.8 99 78.8
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 1.5e-39 166.0 97 79.4
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 2.5e-39 165.2 98 76.5
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 3.2e-39 164.9 99 77.8
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 9.5e-39 163.3 98 76.5
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.2e-38 162.9 97 76.3
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.6e-38 162.5 96 79.2
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.6e-38 162.5 99 73.7
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.8e-38 161.8 96 79.2
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 2.8e-38 161.8 100 76.0
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 3.6e-38 161.4 99 77.8
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 4.7e-38 161.0 91 80.2
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 4.7e-38 161.0 92 79.3
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 4.7e-38 161.0 92 79.3
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 6.1e-38 160.6 99 76.8
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.0e-37 159.8 93 79.6
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 1.0e-37 159.8 97 78.4
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 1.4e-37 159.5 92 77.2
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.4e-37 159.5 94 79.8
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 1.4e-37 159.5 94 79.8
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.4e-37 159.5 94 79.8
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.4e-37 159.5 96 77.1
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 1.8e-37 159.1 94 77.7
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 2.3e-37 158.7 94 77.7
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 3.0e-37 158.3 99 73.7
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 4.0e-37 157.9 99 78.8
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 4.0e-37 157.9 99 78.8
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 4.0e-37 157.9 99 73.7
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 4.0e-37 157.9 97 78.4
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 5.2e-37 157.5 98 78.6
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 5.2e-37 157.5 99 74.7
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 8.8e-37 156.8 95 80.0
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.2e-36 156.4 99 71.7
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.2e-36 156.4 99 71.7
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 2.0e-36 155.6 93 77.4
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 2.0e-36 155.6 97 77.3
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.0e-36 155.6 99 71.7
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 2.6e-36 155.2 96 78.1
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 2.6e-36 155.2 94 74.5
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 3.4e-36 154.8 100 73.0
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 3.4e-36 154.8 93 75.3
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 4.4e-36 154.5 87 78.2
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 4.4e-36 154.5 99 70.7
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 4.4e-36 154.5 94 73.4
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 4.4e-36 154.5 95 78.9
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 5.7e-36 154.1 97 72.2
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 5.7e-36 154.1 97 72.2
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 5.7e-36 154.1 97 72.2
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 7.5e-36 153.7 99 70.7
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 7.5e-36 153.7 96 77.1
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 9.8e-36 153.3 98 76.5
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 9.8e-36 153.3 98 76.5
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 9.8e-36 153.3 94 73.4
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 1.3e-35 152.9 118 64.4
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 1.7e-35 152.5 85 81.2
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 1.7e-35 152.5 99 70.7
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 1.7e-35 152.5 97 71.1
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 1.7e-35 152.5 97 71.1
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 1.7e-35 152.5 97 75.3
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 1.7e-35 152.5 92 77.2
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 1.7e-35 152.5 96 76.0
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 1.7e-35 152.5 97 72.2
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 2.2e-35 152.1 98 70.4
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 2.2e-35 152.1 94 75.5
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 2.8e-35 151.8 94 74.5
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 3.7e-35 151.4 93 77.4
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 4.9e-35 151.0 94 74.5
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 6.3e-35 150.6 96 75.0
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 8.3e-35 150.2 94 72.3
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 8.3e-35 150.2 89 76.4
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 1.1e-34 149.8 94 72.3
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.1e-34 149.8 98 72.4
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 1.4e-34 149.4 96 70.8
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.4e-34 149.4 93 76.3
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 1.8e-34 149.1 93 78.5
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 1.8e-34 149.1 118 64.4
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 5.4e-34 147.5 93 75.3
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 7.0e-34 147.1 95 70.5
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 9.2e-34 146.7 93 74.2
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 2.0e-33 145.6 99 70.7
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 3.5e-33 144.8 91 73.6
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 4.5e-33 144.4 91 72.5
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 4.5e-33 144.4 94 70.2
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 5.9e-33 144.1 82 78.0
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 7.8e-33 143.7 88 77.3
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 1.0e-32 143.3 89 74.2
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 2.5e-31 138.7 89 70.8
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 2.5e-31 138.7 86 70.9
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 2.5e-31 138.7 86 70.9
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 8.0e-30 133.7 87 69.0
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 1.4e-29 132.9 85 69.4
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 1.5e-28 129.4 93 62.4
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 3.4e-28 128.3 100 62.0
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 5.7e-28 127.5 66 83.3
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.7e-27 125.9 66 84.8
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 2.9e-27 125.2 66 83.3
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 6.4e-27 124.0 68 83.8
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 1.8e-26 122.5 87 62.1
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 4.1e-26 121.3 72 76.4
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 3.5e-25 118.2 85 63.5
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 1.3e-24 116.3 79 65.8
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 1.1e-23 113.2 66 75.8
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 2.5e-23 112.1 63 77.8
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 3.3e-23 111.7 91 61.5
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 7.3e-23 110.5 96 55.2
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.6e-22 109.4 82 61.0
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 2.1e-22 109.0 90 55.6
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 8.0e-22 107.1 67 74.6
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 8.0e-22 107.1 63 74.6
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 3.1e-21 105.1 62 74.2
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 2.0e-20 102.4 63 71.4
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.0e-20 102.4 53 81.1
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 5.8e-20 100.9 64 70.3
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.1e-18 96.7 59 76.3
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 1.9e-18 95.9 67 64.2
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 2.4e-18 95.5 66 68.2
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.0e-17 92.4 66 65.2
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 3.9e-16 88.2 82 51.2
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 1.2e-14 83.2 55 69.1
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 1.6e-14 82.8 73 52.1
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 2.1e-14 82.4 82 48.8
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 2.6e-12 75.5 80 50.0
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 3.2e-10 68.6 33 87.9
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 7.8e-09 63.9 61 49.2


User provided reference genes

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