Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 1.3e-279 965.7 474 100.0
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 2.6e-259 898.3 474 90.9
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 5.4e-257 890.6 474 89.9
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 2.0e-251 872.1 474 87.6
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.8e-249 865.5 450 90.4
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.4e-249 865.1 474 86.9
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.0e-247 859.8 473 86.9
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.3e-247 859.4 450 89.6
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.9e-217 759.2 474 77.0
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 2.3e-215 752.3 456 78.1
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 3.9e-215 751.5 461 78.1
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 8.7e-215 750.4 456 77.9
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 1.5e-214 749.6 457 79.0
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 1.5e-214 749.6 456 77.9
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 1.6e-213 746.1 456 77.6
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 8.1e-213 743.8 456 77.0
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 9.0e-212 740.3 456 76.5
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 9.0e-212 740.3 451 78.0
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 1.2e-211 740.0 457 76.6
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 2.0e-211 739.2 456 77.2
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 5.8e-211 737.6 456 77.2
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 2.2e-210 735.7 457 76.6
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 4.9e-210 734.6 457 76.4
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 4.9e-210 734.6 456 77.2
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 4.9e-210 734.6 458 77.7
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 8.4e-210 733.8 457 76.4
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 8.4e-210 733.8 457 76.1
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.4e-209 733.0 457 77.5
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 1.9e-209 732.6 456 77.2
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 3.2e-209 731.9 453 77.9
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 9.3e-209 730.3 457 76.6
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 2.1e-208 729.2 450 75.8
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 2.3e-207 725.7 457 75.9
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 3.0e-207 725.3 452 75.7
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 1.5e-206 723.0 455 76.9
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 5.6e-206 721.1 451 77.4
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 7.4e-206 720.7 452 76.5
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 2.8e-205 718.8 458 75.5
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 4.8e-205 718.0 456 75.9
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 1.4e-204 716.5 472 73.1
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 5.3e-204 714.5 459 75.6
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 2.0e-203 712.6 397 82.9
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 2.6e-203 712.2 462 74.0
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 3.4e-203 711.8 445 74.8
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 3.4e-203 711.8 457 74.0
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 5.8e-203 711.1 455 76.0
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 7.6e-203 710.7 452 75.2
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 1.3e-202 709.9 454 75.3
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 2.2e-202 709.1 451 74.1
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 3.8e-202 708.4 472 73.3
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 3.8e-202 708.4 449 76.2
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 3.8e-202 708.4 452 75.2
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 8.4e-202 707.2 452 75.2
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 2.4e-201 705.7 454 74.9
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.2e-201 705.3 449 76.4
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 7.1e-201 704.1 452 75.0
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 9.3e-201 703.7 457 73.1
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 1.2e-200 703.4 452 74.6
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.1e-200 702.6 453 74.2
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 2.7e-200 702.2 416 79.8
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 3.5e-200 701.8 452 73.9
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 3.5e-200 701.8 457 72.9
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 3.5e-200 701.8 451 74.7
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 7.9e-200 700.7 455 74.7
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 7.9e-200 700.7 457 73.1
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 3.9e-199 698.4 451 74.7
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 6.7e-199 697.6 457 72.4
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 8.7e-199 697.2 454 73.1
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.5e-198 696.4 400 80.8
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 1.9e-198 696.0 456 75.0
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 2.5e-198 695.7 452 74.6
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 2.5e-198 695.7 457 72.9
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.8e-197 691.4 450 74.0
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 6.2e-197 691.0 456 73.9
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 6.2e-197 691.0 459 72.8
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 3.1e-196 688.7 364 84.1
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.0e-196 688.3 448 74.6
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 4.0e-196 688.3 410 79.5
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 5.3e-196 688.0 458 72.9
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 5.3e-196 688.0 490 69.2
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 1.2e-195 686.8 456 72.1
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 1.2e-195 686.8 451 73.2
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 1.5e-195 686.4 364 83.8
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 2.6e-195 685.6 446 73.5
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 2.6e-195 685.6 449 73.1
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 3.4e-195 685.3 431 75.6
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 5.8e-195 684.5 449 72.8
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 7.6e-195 684.1 457 72.2
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.3e-194 683.3 431 75.6
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.3e-194 683.3 458 72.5
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 2.2e-194 682.6 449 72.6
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 2.9e-194 682.2 434 75.8
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 6.5e-194 681.0 455 72.5
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.1e-193 680.2 408 78.9
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 7.1e-193 677.6 452 73.0
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 9.3e-193 677.2 418 75.8
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 9.3e-193 677.2 406 77.1
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 1.3e-191 673.3 425 74.6
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 1.8e-191 672.9 399 79.4
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 3.0e-191 672.2 406 76.8
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 3.0e-191 672.2 407 76.9
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 3.3e-190 668.7 459 71.2
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 1.3e-189 666.8 523 64.4
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 3.7e-189 665.2 450 72.2
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 8.2e-189 664.1 449 71.5
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 1.4e-188 663.3 440 72.7
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 1.5e-187 659.8 384 78.9
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 1.9e-185 652.9 445 72.4
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 5.5e-185 651.4 444 71.2
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 5.7e-182 641.3 407 73.0
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.8e-181 638.3 451 70.5
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 1.2e-179 633.6 414 72.7
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 1.0e-175 620.5 322 87.3
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.8e-175 619.8 451 66.7
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.1e-174 617.1 442 69.5
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 4.4e-174 615.1 347 81.6
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 6.9e-172 607.8 326 84.0
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 1.2e-171 607.1 455 66.2
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.2e-171 607.1 458 65.3
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 9.1e-164 580.9 445 64.9
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.9e-162 575.9 309 87.4
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 1.9e-161 573.2 408 68.1
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 5.7e-158 561.6 378 66.9
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 3.7e-157 558.9 289 86.9
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 4.8e-157 558.5 270 95.9
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 6.3e-157 558.1 291 86.6
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.1e-156 557.4 289 85.8
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 1.8e-148 530.0 290 82.1
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 5.4e-148 528.5 357 72.0
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.2e-143 511.9 334 67.4
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 4.5e-139 498.8 410 64.1
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 4.6e-131 472.2 316 74.7
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 7.8e-123 444.9 377 54.4
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 9.5e-121 438.0 273 77.3
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 1.6e-120 437.2 285 68.8
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.4e-111 407.5 342 54.1
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.5e-97 360.1 245 72.7
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.1e-96 357.1 318 53.8
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.9e-90 336.3 338 48.8
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 3.6e-67 260.0 139 84.9
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 5.1e-66 256.1 179 67.0
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.3e-53 214.9 109 86.2
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.2e-51 208.4 122 76.2
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.6e-49 200.7 124 72.6
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.6e-46 191.4 137 63.5
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 3.5e-46 190.3 126 69.8
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 6.8e-34 149.4 85 80.0
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.0e-33 147.9 85 78.8
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 2.7e-30 137.5 80 77.5
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 1.5e-28 131.7 101 64.4
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 4.3e-12 77.0 51 66.7
SHI25903 Sapria himalayana HOM05D004680 ORTHO05D365905 8.0e-11 72.8 134 41.0
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 5.8e-09 66.6 134 37.3
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 1.1e-07 62.4 90 43.3


User provided reference genes

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