Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 2.5e-107 392.1 196 100.0
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 4.5e-93 344.7 196 86.2
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.4e-86 323.2 190 82.6
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.4e-86 323.2 193 80.8
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.8e-86 322.8 193 81.3
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 5.9e-85 317.8 193 80.8
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 8.6e-84 313.9 196 79.6
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 4.7e-82 308.1 196 78.1
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 8.0e-82 307.4 196 78.1
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 6.8e-81 304.3 196 78.1
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 9.8e-80 300.4 196 76.5
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 2.2e-79 299.3 196 75.0
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 2.9e-79 298.9 195 74.9
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 4.9e-79 298.1 191 74.9
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 6.4e-79 297.7 196 77.0
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 1.9e-78 296.2 196 75.5
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.9e-78 296.2 190 73.7
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 2.4e-78 295.8 196 75.5
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 5.4e-78 294.7 197 74.6
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 1.2e-77 293.5 196 75.5
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 1.2e-77 293.5 191 73.3
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 1.2e-77 293.5 190 76.8
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 1.2e-77 293.5 190 77.9
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 1.6e-77 293.1 193 74.6
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 1.6e-77 293.1 196 75.0
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.6e-77 293.1 196 75.5
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 1.6e-77 293.1 196 75.0
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 1.6e-77 293.1 196 75.5
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.0e-77 292.7 196 73.0
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 3.5e-77 292.0 196 73.5
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 4.6e-77 291.6 195 74.4
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 4.6e-77 291.6 197 74.1
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 4.6e-77 291.6 190 73.7
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 6.0e-77 291.2 196 76.5
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 7.8e-77 290.8 191 74.9
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 1.0e-76 290.4 197 73.1
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 1.0e-76 290.4 191 73.3
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 2.3e-76 289.3 196 73.0
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 2.3e-76 289.3 193 74.1
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 2.3e-76 289.3 190 75.3
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.3e-76 289.3 190 72.6
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 3.9e-76 288.5 196 72.4
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 5.0e-76 288.1 188 74.5
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 5.0e-76 288.1 180 79.4
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 6.6e-76 287.7 197 71.6
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 6.6e-76 287.7 197 73.1
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 6.6e-76 287.7 167 85.6
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 1.1e-75 287.0 194 74.2
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.9e-75 286.2 189 75.1
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 2.5e-75 285.8 196 73.5
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 3.3e-75 285.4 187 74.9
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 9.5e-75 283.9 195 71.8
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 1.6e-74 283.1 195 70.8
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 2.1e-74 282.7 190 75.3
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 2.8e-74 282.3 195 73.3
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 4.7e-74 281.6 196 71.4
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 8.0e-74 280.8 197 71.1
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.1e-73 280.4 190 74.2
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 1.4e-73 280.0 196 70.9
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 2.3e-73 279.3 196 71.9
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 4.0e-73 278.5 169 79.9
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 4.0e-73 278.5 196 71.9
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 6.8e-73 277.7 184 76.1
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 6.8e-73 277.7 196 71.9
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 8.9e-73 277.3 170 81.2
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.2e-72 276.9 189 72.5
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.5e-72 276.6 195 71.8
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 1.5e-72 276.6 195 71.3
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 3.4e-72 275.4 197 69.5
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 4.4e-72 275.0 188 72.9
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 5.8e-72 274.6 190 73.7
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 3.7e-71 271.9 198 69.2
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 4.9e-71 271.6 191 69.1
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 6.4e-71 271.2 194 72.2
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 1.9e-70 269.6 198 69.2
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 3.2e-70 268.9 190 68.4
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 3.2e-70 268.9 170 78.8
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 3.2e-70 268.9 178 73.6
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.6e-69 266.5 190 68.4
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 2.1e-69 266.2 195 70.8
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 2.7e-69 265.8 206 67.0
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.7e-68 263.1 208 65.9
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.7e-68 263.1 189 70.4
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.9e-68 261.9 191 71.2
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 8.6e-68 260.8 174 76.4
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 3.3e-67 258.8 179 72.1
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 7.3e-67 257.7 170 74.1
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 9.5e-67 257.3 173 75.7
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 9.5e-67 257.3 167 76.0
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 9.5e-67 257.3 187 67.4
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 1.2e-66 256.9 169 76.9
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 1.6e-66 256.5 170 74.7
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 2.1e-66 256.1 196 68.4
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 1.8e-65 253.1 167 74.9
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 6.8e-65 251.1 177 69.5
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 6.8e-65 251.1 167 73.7
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 8.9e-65 250.8 178 71.3
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 8.9e-65 250.8 186 68.8
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 2.6e-64 249.2 169 73.4
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 3.4e-64 248.8 186 66.1
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 4.4e-64 248.4 171 72.5
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 5.8e-64 248.1 195 61.5
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 1.1e-62 243.8 190 61.6
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 1.4e-62 243.4 166 73.5
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.9e-62 243.0 189 65.6
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 4.6e-61 238.4 192 58.9
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 1.3e-60 236.9 167 69.5
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 3.0e-60 235.7 170 70.6
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 3.0e-60 235.7 196 61.2
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.1e-59 233.8 161 71.4
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 1.1e-59 233.8 195 60.5
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.2e-58 230.3 188 62.2
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.6e-58 229.9 193 62.7
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 6.2e-58 228.0 177 66.7
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 6.8e-57 224.6 170 65.9
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 1.3e-55 220.3 188 56.9
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 2.9e-55 219.2 192 59.9
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 1.1e-54 217.2 142 76.1
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 4.2e-54 215.3 142 73.2
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 4.6e-53 211.8 187 54.5
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.0e-52 210.7 189 58.2
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 1.2e-50 203.8 196 55.1
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 6.2e-50 201.4 133 73.7
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.0e-48 196.4 191 56.5
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 5.8e-48 194.9 193 50.8
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 4.9e-47 191.8 125 76.8
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 2.4e-46 189.5 121 78.5
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 2.1e-45 186.4 190 54.2
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 3.6e-42 175.6 118 73.7
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 9.0e-41 171.0 133 60.2
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 4.5e-40 168.7 170 57.6
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.4e-38 163.7 170 52.9
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 4.6e-37 158.7 187 44.9
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 1.4e-22 110.5 116 53.4
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 1.1e-14 84.3 52 76.9
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 9.4e-14 81.3 61 65.6
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 1.2e-13 80.9 58 63.8
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 3.1e-09 66.2 172 30.2
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 2.0e-08 63.5 52 65.4
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 3.4e-08 62.8 169 29.6
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 1.0e-07 61.2 192 29.7
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 1.0e-07 61.2 179 29.1
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 1.3e-07 60.8 172 28.5
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.7e-07 60.5 169 30.2
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 1.7e-07 60.5 56 55.4
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 2.2e-07 60.1 178 29.2
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 2.2e-07 60.1 178 29.2
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 5.0e-07 58.9 182 25.3
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 5.0e-07 58.9 174 28.2
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 5.0e-07 58.9 174 28.2
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 5.0e-07 58.9 169 31.4
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 6.5e-07 58.5 176 30.1
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 8.5e-07 58.2 174 28.2
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 8.5e-07 58.2 174 28.2
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 8.5e-07 58.2 172 29.1
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 1.1e-06 57.8 174 28.2
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 1.1e-06 57.8 169 29.6
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 1.4e-06 57.4 169 29.6
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 1.9e-06 57.0 173 28.9
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 1.9e-06 57.0 174 28.2
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 2.5e-06 56.6 175 29.1
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 2.5e-06 56.6 169 30.2
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 3.2e-06 56.2 151 29.1
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 3.2e-06 56.2 170 27.1
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 4.2e-06 55.8 175 29.1
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 4.2e-06 55.8 171 26.3
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 4.2e-06 55.8 170 25.3
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 4.2e-06 55.8 182 28.0
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 5.5e-06 55.5 172 29.1
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 7.2e-06 55.1 187 26.2
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 9.4e-06 54.7 172 26.7
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 9.4e-06 54.7 182 24.7
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 9.4e-06 54.7 169 29.6
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 9.4e-06 54.7 173 27.2


User provided reference genes

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