Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 1.2e-74 283.1 145 100.0
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 1.8e-70 269.2 145 93.8
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 5.8e-69 264.2 145 92.4
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 9.8e-69 263.5 145 92.4
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 1.3e-68 263.1 145 91.7
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 1.7e-68 262.7 145 91.0
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 1.7e-68 262.7 145 91.0
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 1.5e-64 249.6 145 86.2
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 2.5e-64 248.8 145 85.5
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 3.3e-64 248.4 145 86.2
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 3.3e-64 248.4 145 86.2
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 4.3e-64 248.1 145 85.5
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 9.5e-64 246.9 145 85.5
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 9.5e-64 246.9 145 84.8
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 9.5e-64 246.9 145 84.8
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 1.6e-63 246.1 145 84.8
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 2.1e-63 245.7 145 86.2
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 2.1e-63 245.7 145 86.2
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 2.8e-63 245.4 145 85.5
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 2.8e-63 245.4 145 84.8
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 3.6e-63 245.0 145 83.4
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 3.6e-63 245.0 145 85.5
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 6.2e-63 244.2 145 84.1
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 8.1e-63 243.8 145 84.1
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 8.1e-63 243.8 144 84.7
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 1.1e-62 243.4 145 84.8
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 2.3e-62 242.3 145 83.4
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 3.1e-62 241.9 145 83.4
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 3.1e-62 241.9 145 85.5
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 3.1e-62 241.9 145 83.4
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 3.1e-62 241.9 145 84.8
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 3.1e-62 241.9 145 84.8
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 4.0e-62 241.5 145 84.8
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 5.2e-62 241.1 145 84.1
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 5.2e-62 241.1 145 83.4
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 5.2e-62 241.1 145 84.8
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 6.8e-62 240.7 145 83.4
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 6.8e-62 240.7 146 84.9
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 6.8e-62 240.7 146 84.9
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 8.9e-62 240.4 145 82.8
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 1.5e-61 239.6 145 83.4
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 1.5e-61 239.6 145 82.1
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 2.0e-61 239.2 145 81.4
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 3.4e-61 238.4 144 81.9
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 4.4e-61 238.0 145 83.4
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 7.5e-61 237.3 146 82.9
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 82.2
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 82.2
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 1.3e-60 236.5 145 82.1
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 1.3e-60 236.5 145 82.8
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 81.5
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 1.7e-60 236.1 145 80.0
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 1.7e-60 236.1 145 82.1
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 2.2e-60 235.7 146 81.5
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 2.2e-60 235.7 146 81.5
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 2.2e-60 235.7 145 82.1
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 2.2e-60 235.7 145 82.1
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 2.9e-60 235.3 146 82.2
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 2.9e-60 235.3 145 83.4
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 2.9e-60 235.3 145 82.8
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 3.7e-60 235.0 146 80.8
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 3.7e-60 235.0 146 80.8
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 3.7e-60 235.0 146 81.5
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 3.7e-60 235.0 146 81.5
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 8.3e-60 233.8 146 81.5
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 8.3e-60 233.8 145 81.4
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 8.3e-60 233.8 146 80.8
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 8.3e-60 233.8 145 80.7
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.1e-59 233.4 146 80.8
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 1.1e-59 233.4 146 80.1
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.1e-59 233.4 145 82.1
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.9e-59 232.6 146 82.9
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 2.4e-59 232.3 145 79.3
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 3.2e-59 231.9 145 81.4
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 3.2e-59 231.9 149 81.9
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 3.2e-59 231.9 146 82.2
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 3.2e-59 231.9 146 80.8
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 3.2e-59 231.9 146 80.8
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 4.1e-59 231.5 145 80.0
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 4.1e-59 231.5 145 80.7
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 4.1e-59 231.5 145 80.7
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 4.1e-59 231.5 146 82.9
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 5.4e-59 231.1 145 80.7
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 7.1e-59 230.7 146 81.5
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 9.2e-59 230.3 145 77.9
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 9.2e-59 230.3 145 82.1
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.2e-58 229.9 146 82.2
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 1.6e-58 229.6 145 78.6
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 81.5
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 80.1
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 80.8
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 81.5
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 3.5e-58 228.4 137 82.5
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 4.6e-58 228.0 145 78.6
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 6.0e-58 227.6 146 80.1
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 7.8e-58 227.3 146 78.8
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 7.8e-58 227.3 146 80.8
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 7.8e-58 227.3 147 80.3
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.0e-57 226.9 146 78.8
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 1.0e-57 226.9 144 80.6
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 1.3e-57 226.5 146 80.8
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 1.7e-57 226.1 146 80.8
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 1.7e-57 226.1 145 79.3
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 2.3e-57 225.7 146 78.8
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 2.3e-57 225.7 138 82.6
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.3e-57 225.7 146 80.8
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 3.0e-57 225.3 145 78.6
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 3.0e-57 225.3 148 79.7
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 3.0e-57 225.3 146 80.1
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 3.0e-57 225.3 145 79.3
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 3.9e-57 224.9 146 78.8
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 3.9e-57 224.9 145 80.0
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 3.9e-57 224.9 145 77.9
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 77.4
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 5.1e-57 224.6 136 82.4
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 5.1e-57 224.6 147 78.2
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 78.1
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 82.2
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 78.1
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 80.1
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 8.6e-57 223.8 143 81.8
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 1.1e-56 223.4 146 78.1
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 2.5e-56 222.2 142 78.9
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 3.3e-56 221.9 146 77.4
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 3.3e-56 221.9 146 77.4
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 3.3e-56 221.9 146 77.4
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 3.3e-56 221.9 146 77.4
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 3.3e-56 221.9 145 80.0
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 3.3e-56 221.9 145 80.0
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 4.3e-56 221.5 146 78.1
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 7.3e-56 220.7 146 78.1
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 2.1e-55 219.2 146 76.7
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 2.8e-55 218.8 146 76.7
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 2.8e-55 218.8 146 76.7
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 2.8e-55 218.8 145 77.9
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 2.8e-55 218.8 146 76.7
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 4.7e-55 218.0 146 76.0
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 4.7e-55 218.0 145 77.9
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 1.1e-54 216.9 146 76.0
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 2.0e-53 212.6 146 76.0
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 1.7e-52 209.5 143 75.5
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 2.2e-52 209.1 147 74.1
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 3.8e-52 208.4 146 76.7
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 1.9e-51 206.1 145 73.8
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 4.1e-51 204.9 146 71.9
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 1.6e-50 203.0 146 71.2
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 1.3e-49 199.9 145 73.1
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 3.0e-49 198.7 130 76.9
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 6.6e-49 197.6 146 74.0
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 5.6e-48 194.5 145 71.7
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 6.9e-46 187.6 103 89.3
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 6.9e-46 187.6 147 70.7
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 1.4e-43 179.9 103 84.5
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 3.2e-43 178.7 98 91.8
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 3.5e-42 175.3 147 63.9
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 7.8e-42 174.1 102 83.3
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 4.0e-38 161.8 134 67.2
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 9.3e-35 150.6 85 87.1
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 7.9e-34 147.5 136 55.1
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 1.3e-33 146.7 147 59.2
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 3.0e-33 145.6 136 53.7
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 1.1e-32 143.7 85 83.5
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 1.9e-32 142.9 142 54.9
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 1.8e-30 136.3 145 56.6
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 6.9e-30 134.4 145 55.9
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 4.9e-28 128.3 85 75.3
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 1.2e-26 123.6 73 78.1
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 1.3e-25 120.2 146 54.8
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 5.8e-21 104.8 60 86.7
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 1.3e-20 103.6 68 76.5
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 3.9e-17 92.0 68 70.6
MCO07G351 Micromonas commoda HOM05D003870 ORTHO05D004567 3.7e-15 85.5 126 42.1
Zm00001eb343540 Zea mays HOM05D003870 ORTHO05D004567 5.9e-13 78.2 132 47.7
unitig_747.g21485 Utricularia gibba HOM05D003870 ORTHO05D004567 3.2e-11 72.4 142 38.7
Cre07.g330250 Chlamydomonas reinhardtii HOM05D003870 ORTHO05D004567 7.2e-11 71.2 103 39.8
MD02G1178900 Malus domestica HOM05D003870 ORTHO05D004567 1.0e-09 67.4 33 90.9
TAR629G2234 Trochodendron aralioides HOM05D002207 ORTHO05D002250 6.9e-06 54.7 43 69.8


User provided reference genes

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