Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 2.2e-61 239.2 161 100.0
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.7e-19 98.6 84 85.7
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 7.9e-19 97.8 112 75.0
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.0e-18 97.4 84 85.7
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.4e-18 97.1 84 84.5
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.4e-18 97.1 84 84.5
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.0e-18 95.9 84 83.3
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 6.7e-18 94.7 92 75.0
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 6.7e-18 94.7 81 56.8
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 8.8e-18 94.4 76 68.4
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 2.6e-17 92.8 117 69.2
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 2.6e-17 92.8 86 84.9
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.4e-17 92.0 42 95.2
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 4.4e-17 92.0 42 95.2
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 4.4e-17 92.0 90 75.6
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 7.4e-17 91.3 75 61.3
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 7.4e-17 91.3 56 78.6
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 9.7e-17 90.9 56 85.7
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 9.7e-17 90.9 68 67.6
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.3e-16 90.5 64 68.8
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 1.3e-16 90.5 108 70.4
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 1.3e-16 90.5 86 79.1
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 1.7e-16 90.1 67 68.7
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 2.2e-16 89.7 86 80.2
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 2.2e-16 89.7 116 56.9
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 3.7e-16 89.0 67 91.0
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 4.8e-16 88.6 88 52.3
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 6.3e-16 88.2 87 69.0
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 6.3e-16 88.2 42 95.2
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 6.3e-16 88.2 56 71.4
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 6.3e-16 88.2 113 65.5
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 8.2e-16 87.8 79 89.9
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.1e-15 87.4 86 80.2
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 1.4e-15 87.0 86 77.9
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 1.4e-15 87.0 95 49.5
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.4e-15 87.0 53 75.5
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 1.8e-15 86.7 86 53.5
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 1.8e-15 86.7 64 67.2
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 1.8e-15 86.7 100 63.0
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 2.4e-15 86.3 99 49.5
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 2.4e-15 86.3 81 54.3
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 3.1e-15 85.9 78 59.0
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 3.1e-15 85.9 80 56.2
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 3.1e-15 85.9 80 56.2
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 3.1e-15 85.9 80 56.2
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 3.1e-15 85.9 120 60.0
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 3.1e-15 85.9 86 72.1
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 4.1e-15 85.5 80 56.2
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 4.1e-15 85.5 53 77.4
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 4.1e-15 85.5 59 69.5
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 5.3e-15 85.1 79 82.3
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 6.9e-15 84.7 54 72.2
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 6.9e-15 84.7 77 55.8
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 6.9e-15 84.7 56 82.1
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 6.9e-15 84.7 84 85.7
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 6.9e-15 84.7 68 66.2
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 6.9e-15 84.7 47 78.7
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 9.1e-15 84.3 107 69.2
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 9.1e-15 84.3 93 54.8
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 1.2e-14 84.0 56 69.6
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 1.2e-14 84.0 56 89.3
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 1.2e-14 84.0 130 43.1
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 1.2e-14 84.0 54 74.1
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 1.2e-14 84.0 72 61.1
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 1.5e-14 83.6 76 57.9
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 1.5e-14 83.6 76 57.9
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 1.5e-14 83.6 42 88.1
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.5e-14 83.6 42 88.1
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.5e-14 83.6 42 88.1
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 1.5e-14 83.6 81 76.5
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 1.5e-14 83.6 41 90.2
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 2.0e-14 83.2 59 66.1
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 2.0e-14 83.2 59 66.1
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 2.0e-14 83.2 59 66.1
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 2.0e-14 83.2 53 73.6
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.6e-14 82.8 59 66.1
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 2.6e-14 82.8 73 57.5
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 2.6e-14 82.8 42 83.3
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 2.6e-14 82.8 73 71.2
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.4e-14 82.4 87 74.7
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.4e-14 82.4 87 74.7
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 3.4e-14 82.4 39 97.4
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 3.4e-14 82.4 84 76.2
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 3.4e-14 82.4 64 81.2
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 4.5e-14 82.0 83 75.9
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 5.9e-14 81.6 86 73.3
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 5.9e-14 81.6 40 87.5
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 5.9e-14 81.6 59 64.4
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 1.0e-13 80.9 71 56.3
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 1.0e-13 80.9 66 60.6
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 1.3e-13 80.5 56 64.3
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.7e-13 80.1 63 63.5
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.7e-13 80.1 64 64.1
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 2.2e-13 79.7 61 65.6
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 2.2e-13 79.7 36 97.2
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 2.2e-13 79.7 85 80.0
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 3.8e-13 79.0 38 92.1
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 5.0e-13 78.6 99 68.7
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 5.0e-13 78.6 75 72.0
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 6.5e-13 78.2 37 94.6
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 6.5e-13 78.2 87 66.7
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 6.5e-13 78.2 54 68.5
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 6.5e-13 78.2 40 90.0
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 6.5e-13 78.2 59 64.4
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 8.5e-13 77.8 38 89.5
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.1e-12 77.4 38 89.5
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 1.1e-12 77.4 103 68.0
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 1.1e-12 77.4 38 86.8
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 1.1e-12 77.4 38 89.5
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 1.1e-12 77.4 38 89.5
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 1.1e-12 77.4 40 87.5
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 1.1e-12 77.4 40 87.5
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 1.4e-12 77.0 60 65.0
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 1.9e-12 76.6 86 79.1
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 2.5e-12 76.3 54 64.8
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 7.2e-12 74.7 35 97.1
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 7.2e-12 74.7 35 97.1
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 9.4e-12 74.3 81 77.8
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 9.4e-12 74.3 53 67.9
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 1.6e-11 73.6 35 88.6
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 2.7e-11 72.8 35 88.6
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 4.7e-11 72.0 79 77.2
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.0e-10 70.9 37 81.1
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 1.0e-10 70.9 42 76.2
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 1.8e-10 70.1 50 78.0
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 6.7e-10 68.2 162 42.0
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 1.5e-09 67.0 42 69.0


User provided reference genes

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