Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G089600 Theobroma cacao HOM05D007950 ORTHO05D009951 4.7e-29 130.6 69 100.0
CiPaw.02G150700 Carya illinoinensis HOM05D007950 ORTHO05D009951 2.5e-22 108.2 69 81.2
Gohir.A05G130600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 4.7e-21 104.0 69 81.2
TAR636G2963 Trochodendron aralioides HOM05D007950 ORTHO05D009951 4.7e-21 104.0 68 76.5
FAN26G3407 Fragaria x ananassa HOM05D007950 ORTHO05D009951 6.2e-21 103.6 68 76.5
FvH4_1g04841 Fragaria vesca HOM05D007950 ORTHO05D009951 1.1e-20 102.8 68 77.9
FAN19G2230 Fragaria x ananassa HOM05D007950 ORTHO05D009951 1.1e-20 102.8 68 77.9
Gohir.D03G063400 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.4e-20 102.4 68 80.9
Gohir.D05G129500 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.4e-20 102.4 69 79.7
Gorai.002G059800 Gossypium raimondii HOM05D007950 ORTHO05D009951 1.4e-20 102.4 68 80.9
QL05p023317 Quercus lobata HOM05D007950 ORTHO05D009951 1.4e-20 102.4 68 73.5
Nn8g39199 Nelumbo nucifera HOM05D007950 ORTHO05D009951 1.8e-20 102.1 68 76.5
MD02G1047700 Malus domestica HOM05D007950 ORTHO05D009951 3.1e-20 101.3 68 76.5
Gohir.1Z049586 Gossypium hirsutum HOM05D007950 ORTHO05D009951 5.2e-20 100.5 68 79.4
Sc10g0007380 Simmondsia chinensis HOM05D007950 ORTHO05D009951 1.2e-19 99.4 69 71.0
Potri.001G181701 Populus trichocarpa HOM05D007950 ORTHO05D009951 3.4e-19 97.8 69 72.5
FAN23G0617 Fragaria x ananassa HOM05D007950 ORTHO05D009951 5.8e-19 97.1 68 73.5
Nn2g11757 Nelumbo nucifera HOM05D007950 ORTHO05D009951 5.8e-19 97.1 68 70.6
GSVIVG01015395001 Vitis vinifera HOM05D007950 ORTHO05D009951 5.8e-19 97.1 68 72.1
MD15G1186200 Malus domestica HOM05D007950 ORTHO05D009951 7.6e-19 96.7 68 73.5
RcHm_v2.0_Chr2g0090511 Rosa chinensis HOM05D007950 ORTHO05D009951 1.3e-18 95.9 68 70.6
Thecc.09G111000 Theobroma cacao HOM05D007950 ORTHO05D009951 1.7e-18 95.5 68 70.6
Eucgr.J02984 Eucalyptus grandis HOM05D007950 ORTHO05D009951 2.9e-18 94.7 61 75.4
Ciclev10010772m.g Citrus clementina HOM05D007950 ORTHO05D009951 6.4e-18 93.6 68 69.1
QL02p085472 Quercus lobata HOM05D007950 ORTHO05D009951 8.4e-18 93.2 68 70.6
Gohir.D06G060600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.4e-17 92.4 68 70.6
Eucgr.C01044 Eucalyptus grandis HOM05D007950 ORTHO05D009951 1.9e-17 92.0 68 70.6
Gohir.A06G062300 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.9e-17 92.0 68 69.1
Lj3g0016273 Lotus japonicus HOM05D007950 ORTHO05D009951 2.4e-17 91.7 67 67.2
CiPaw.03G232500 Carya illinoinensis HOM05D007950 ORTHO05D009951 3.2e-17 91.3 69 69.6
CSS0015996 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 4.2e-17 90.9 67 68.7
Gorai.010G070600 Gossypium raimondii HOM05D007950 ORTHO05D009951 5.4e-17 90.5 68 69.1
Prupe.7G230500 Prunus persica HOM05D007950 ORTHO05D009951 7.1e-17 90.1 67 70.1
Manes.16G116501 Manihot esculenta HOM05D007950 ORTHO05D009951 9.3e-17 89.7 68 61.8
vmacro20696 Vaccinium macrocarpon HOM05D007950 ORTHO05D009951 9.3e-17 89.7 68 66.2
Actinidia20354 Actinidia chinensis HOM05D007950 ORTHO05D009951 1.2e-16 89.4 68 64.7
CiPaw.04G164400 Carya illinoinensis HOM05D007950 ORTHO05D009951 6.0e-16 87.0 58 74.1
ClCG06G008510 Citrullus lanatus HOM05D007950 ORTHO05D009951 7.8e-16 86.7 68 61.8
CsaV3_1G030490 Cucumis sativus L. HOM05D007950 ORTHO05D009951 1.7e-15 85.5 67 61.2
ATR0980G014 Amborella trichopoda HOM05D007950 ORTHO05D009951 2.3e-15 85.1 68 61.8
PGR102G0372 Punica granatum HOM05D007950 ORTHO05D009951 8.7e-15 83.2 68 58.8
Manes.11G045700 Manihot esculenta HOM05D007950 ORTHO05D009951 1.1e-14 82.8 66 66.7
Medtr4g012610 Medicago truncatula HOM05D007950 ORTHO05D009951 1.1e-14 82.8 67 62.7
Psat7g251240 Pisum sativum HOM05D007950 ORTHO05D009951 1.1e-14 82.8 67 61.2
Manes.03G020101 Manihot esculenta HOM05D007950 ORTHO05D009951 3.3e-14 81.3 68 61.8
CDE06G0019 Ceratophyllum demersum HOM05D007950 ORTHO05D009951 4.3e-14 80.9 69 59.4
Glyma.08G206200 Glycine max HOM05D007950 ORTHO05D009951 5.6e-14 80.5 66 60.6
Potri.003G054001 Populus trichocarpa HOM05D007950 ORTHO05D009951 5.6e-14 80.5 69 65.2
Haze_16407 Corylus avellana HOM05D007950 ORTHO05D009951 7.3e-14 80.1 68 60.3
Haze_16408 Corylus avellana HOM05D007950 ORTHO05D009951 7.3e-14 80.1 68 60.3
Psat1g042280 Pisum sativum HOM05D007950 ORTHO05D009951 1.3e-13 79.3 68 58.8
TPR.G24171 Trifolium pratense HOM05D007950 ORTHO05D009951 1.3e-13 79.3 64 60.9
CSS0048253 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 1.6e-13 79.0 67 61.2
arahy.Tifrunner.gnm1.ann1.7G47EE Arachis hypogaea HOM05D007950 ORTHO05D009951 2.1e-13 78.6 68 58.8
arahy.Tifrunner.gnm1.ann1.U6R6BR Arachis hypogaea HOM05D007950 ORTHO05D009951 2.1e-13 78.6 68 58.8
Cc04_g03310 Coffea canephora HOM05D007950 ORTHO05D009951 2.1e-13 78.6 66 63.6
FAN05G0591 Fragaria x ananassa HOM05D007950 ORTHO05D009951 2.8e-13 78.2 69 62.3
Lalb_Chr04g0262731 Lupinus albus HOM05D007950 ORTHO05D009951 2.8e-13 78.2 67 56.7
CSS0032282 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 4.8e-13 77.4 67 59.7
Cc06_g09630 Coffea canephora HOM05D007950 ORTHO05D009951 8.1e-13 76.6 61 63.9
Phvul.003G020900 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 8.1e-13 76.6 68 55.9
Glyma.07G005901 Glycine max HOM05D000325 ORTHO05D002025 1.1e-12 76.3 65 60.0
Medtr6g086645 Medicago truncatula HOM05D007950 ORTHO05D009951 1.1e-12 76.3 68 58.8
FAN14G2438 Fragaria x ananassa HOM05D007950 ORTHO05D009951 1.8e-12 75.5 69 60.9
Prupe.3G070100 Prunus persica HOM05D007950 ORTHO05D009951 1.8e-12 75.5 72 63.9
Medtr4g012580 Medicago truncatula HOM05D007950 ORTHO05D009951 5.3e-12 73.9 64 56.2
TPR.G35274 Trifolium pratense HOM05D007950 ORTHO05D009951 6.9e-12 73.6 66 53.0
Glyma.09G123700 Glycine max HOM05D007950 ORTHO05D009951 1.2e-11 72.8 65 58.5
SalBow2G2396 Salvia bowleyana HOM05D007950 ORTHO05D009951 1.5e-11 72.4 51 68.6
Phvul.010G150100 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 7.6e-11 70.1 67 52.2
arahy.Tifrunner.gnm1.ann1.6Z76EK Arachis hypogaea HOM05D007950 ORTHO05D009951 6.4e-10 67.0 69 52.2
Migut.D01581 Erythranthe guttata HOM05D007950 ORTHO05D009951 6.4e-10 67.0 63 52.4
Sed0000041 Sechium edule HOM05D007950 ORTHO05D009951 1.9e-09 65.5 58 53.4
TPR.G8534 Trifolium pratense HOM05D007950 ORTHO05D009951 3.2e-09 64.7 64 50.0
HanXRQChr09g0275201 Helianthus annuus HOM05D007950 ORTHO05D009951 4.2e-09 64.3 72 48.6
Dinv36624 Davidia involucrata HOM05D007950 ORTHO05D009951 5.4e-09 63.9 68 54.4
Sc08g0007460 Simmondsia chinensis HOM05D007950 ORTHO05D009951 7.1e-09 63.5 68 54.4
Os06g0686900 Oryza sativa ssp. japonica HOM05D018973 ORTHO05D009951 6.7e-07 57.0 68 42.6
Thhalv10012203m.g Eutrema salsugineum HOM05D007950 ORTHO05D009951 1.5e-06 55.8 68 47.1


User provided reference genes

Program Settings