Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 1.7e-196 689.1 338 100.0
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 4.6e-162 574.7 331 84.9
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 2.6e-160 568.9 337 82.5
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 4.3e-160 568.2 338 82.0
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 3.8e-148 528.5 338 78.1
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 8.3e-135 484.2 335 70.7
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 1.2e-133 480.3 343 72.3
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 7.7e-125 451.1 332 67.5
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 2.9e-124 449.1 327 67.3
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 2.3e-121 439.5 331 65.6
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 2.9e-119 432.6 334 62.0
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 4.9e-119 431.8 323 64.1
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 1.8e-118 429.9 339 63.4
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 9.2e-118 427.6 361 60.7
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 5.9e-117 424.9 325 65.2
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 7.8e-117 424.5 330 63.9
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.3e-116 423.7 333 61.6
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 5.0e-116 421.8 332 61.4
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 1.9e-115 419.9 346 59.5
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 7.3e-115 417.9 327 61.5
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 9.5e-115 417.5 319 65.5
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 3.6e-114 415.6 327 63.3
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 6.2e-114 414.8 323 66.6
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 1.4e-113 413.7 347 62.2
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 1.8e-113 413.3 336 60.7
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 2.6e-112 409.5 333 62.2
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 7.5e-112 407.9 331 61.9
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 2.2e-111 406.4 333 61.9
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 6.4e-111 404.8 314 63.4
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 3.2e-110 402.5 335 59.7
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 5.4e-110 401.7 330 62.7
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 9.2e-110 401.0 326 62.0
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 1.2e-109 400.6 334 60.5
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 3.5e-109 399.1 328 61.9
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 3.5e-109 399.1 333 59.8
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 3.5e-109 399.1 333 59.2
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 3.0e-108 396.0 332 58.1
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 3.9e-108 395.6 330 59.7
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 3.9e-108 395.6 329 59.0
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 5.0e-108 395.2 324 61.1
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 5.0e-108 395.2 329 59.0
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 8.6e-108 394.4 380 53.2
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 1.1e-107 394.0 349 56.4
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 1.1e-107 394.0 335 58.8
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 3.3e-107 392.5 327 58.7
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 4.3e-107 392.1 338 58.6
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 2.8e-106 389.4 324 60.5
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 3.6e-106 389.0 330 57.9
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 1.1e-105 387.5 343 59.2
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 2.3e-105 386.3 331 58.3
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 2.3e-105 386.3 339 57.8
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 4.0e-105 385.6 322 59.9
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 5.2e-105 385.2 334 58.7
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 8.9e-105 384.4 324 60.2
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 8.9e-105 384.4 324 60.2
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 1.5e-104 383.6 336 59.2
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 2.0e-104 383.3 326 60.1
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 7.5e-104 381.3 328 59.1
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 1.7e-103 380.2 326 59.5
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 1.9e-102 376.7 325 60.0
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 7.1e-102 374.8 284 63.0
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 2.1e-101 373.2 345 56.8
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 8.6e-100 367.9 323 57.0
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 7.3e-99 364.8 283 65.4
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.6e-98 363.6 345 54.5
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 2.1e-98 363.2 326 58.3
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 6.2e-98 361.7 325 54.8
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 1.1e-97 360.9 331 54.4
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 8.9e-97 357.8 337 57.9
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 2.6e-96 356.3 333 52.9
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 1.9e-94 350.1 341 54.8
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 7.1e-94 348.2 281 59.4
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 9.2e-94 347.8 333 53.8
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 3.5e-93 345.9 343 53.9
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 3.5e-93 345.9 323 54.2
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 1.9e-91 340.1 327 54.7
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 1.6e-90 337.0 327 52.0
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 2.1e-90 336.7 333 53.5
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 2.1e-90 336.7 331 53.8
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 6.2e-90 335.1 330 53.0
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 6.2e-90 335.1 324 52.5
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 6.2e-90 335.1 336 52.7
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 1.1e-89 334.3 325 53.2
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 4.0e-89 332.4 274 62.8
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 4.4e-88 328.9 326 52.8
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 5.8e-88 328.6 327 51.7
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 8.4e-87 324.7 334 51.2
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 1.2e-85 320.9 356 49.2
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 1.2e-85 320.9 356 49.2
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 6.0e-85 318.5 305 54.1
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 5.1e-84 315.5 323 52.9
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 4.3e-83 312.4 337 50.1
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 1.3e-82 310.8 355 46.8
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 2.0e-80 303.5 214 67.8
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 2.1e-77 293.5 249 59.8
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 1.8e-76 290.4 247 55.9
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 7.4e-75 285.0 342 45.6
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 1.2e-72 277.7 388 43.0
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 1.3e-71 274.2 269 54.3
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 1.1e-67 261.2 331 44.7
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 2.5e-67 260.0 358 38.8
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 3.7e-66 256.1 298 47.7
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 1.2e-64 251.1 195 60.0
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 1.7e-63 247.3 220 59.1
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.8e-57 227.3 321 38.3
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 2.6e-48 196.8 235 45.5
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 1.7e-47 194.1 328 38.4
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 7.2e-38 162.2 146 58.2
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 3.9e-36 156.4 185 47.0
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 2.5e-30 137.1 208 38.9
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 1.0e-23 115.2 81 64.2
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 1.7e-23 114.4 148 44.6
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 3.0e-20 103.6 74 66.2
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 5.2e-20 102.8 94 53.2
Cpa.g.sc41.10 Carica papaya HOM05D006908 ORTHO05D008662 8.0e-13 79.0 74 59.5
FAN14G1268 Fragaria x ananassa HOM05D006908 ORTHO05D008662 4.0e-12 76.6 70 54.3
Cpa.g.c43825 Carica papaya HOM05D006908 ORTHO05D008662 3.5e-08 63.5 34 85.3
Cpa.g.sc41.11 Carica papaya HOM05D006908 ORTHO05D008662 1.0e-07 62.0 39 61.5
Mapoly0115s0038 Marchantia polymorpha HOM05D001602 ORTHO05D001470 1.7e-07 61.2 169 30.8
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 1.7e-07 61.2 173 24.3
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 2.3e-07 60.8 100 29.0
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 3.8e-07 60.1 100 29.0
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 3.8e-07 60.1 100 29.0
TPR.G11875 Trifolium pratense HOM05D002757 ORTHO05D008031 3.8e-07 60.1 180 26.7
Cpa.g.sc1626.1 Carica papaya HOM05D006908 ORTHO05D008662 5.0e-07 59.7 39 71.8
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 5.0e-07 59.7 159 26.4
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 1.1e-06 58.5 155 27.7
Thecc.09G246000 Theobroma cacao HOM05D002956 ORTHO05D008031 1.1e-06 58.5 90 32.2
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 1.5e-06 58.2 145 28.3
Medtr3g045720 Medicago truncatula HOM05D002956 ORTHO05D008031 2.5e-06 57.4 128 28.9
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 2.5e-06 57.4 88 31.8
Phvul.005G020600 Phaseolus vulgaris HOM05D002956 ORTHO05D008031 2.5e-06 57.4 146 25.3
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 3.3e-06 57.0 187 29.4
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 4.3e-06 56.6 149 28.9
COL.COLO4_07384 Corchorus olitorius HOM05D002956 ORTHO05D008031 5.6e-06 56.2 137 29.2
PSO339G2954 Papaver somniferum HOM05D002956 ORTHO05D008031 7.3e-06 55.8 147 25.9
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 9.5e-06 55.5 197 28.9
Glyma.08G154800 Glycine max HOM05D002956 ORTHO05D008031 9.5e-06 55.5 143 24.5
SMO351G0211 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 9.5e-06 55.5 167 30.5


User provided reference genes

Program Settings