Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 1.2e-61 239.6 115 100.0
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 2.2e-55 218.8 115 93.0
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 3.5e-37 158.3 115 66.1
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 1.5e-35 152.9 112 65.2
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 4.3e-35 151.4 122 60.7
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 2.8e-34 148.7 115 59.1
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 4.8e-34 147.9 115 58.3
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 4.8e-34 147.9 115 58.3
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 6.9e-33 144.1 106 68.9
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 6.5e-31 137.5 118 60.2
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.4e-30 136.3 118 60.2
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 1.3e-28 129.8 115 57.4
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 8.7e-28 127.1 105 55.2
Duzib235G0878 Durio zibethinus HOM05D005672 ORTHO05D003038 1.9e-27 125.9 102 60.8
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 7.4e-27 124.0 111 53.2
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.3e-26 123.2 105 55.2
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 3.7e-26 121.7 120 50.0
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 3.7e-26 121.7 120 50.0
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 4.8e-26 121.3 115 50.4
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 6.3e-26 120.9 120 49.2
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 1.4e-25 119.8 114 50.9
Duzib235G1402 Durio zibethinus HOM05D005672 ORTHO05D003038 3.1e-25 118.6 118 54.2
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 4.1e-25 118.2 115 49.6
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 4.1e-25 118.2 114 50.0
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 4.5e-24 114.8 114 47.4
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 5.9e-24 114.4 120 48.3
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 5.9e-24 114.4 111 53.2
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.7e-23 112.8 113 52.2
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.7e-23 112.8 86 59.3
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 1.9e-22 109.4 111 46.8
PGR102G1467 Punica granatum HOM05D005672 ORTHO05D003038 2.5e-22 109.0 123 42.3
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 1.2e-21 106.7 74 63.5
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.6e-21 106.3 113 50.4
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 2.7e-21 105.5 114 50.9
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.5e-21 105.1 105 49.5
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 4.6e-21 104.8 118 47.5
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 7.9e-21 104.0 105 45.7
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 1.3e-20 103.2 79 53.2
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 8.7e-20 100.5 115 45.2
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.1e-19 100.1 107 48.6
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 4.3e-19 98.2 95 54.7
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 5.7e-19 97.8 110 46.4
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 1.3e-18 96.7 114 48.2
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 1.6e-18 96.3 94 50.0
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.2e-18 95.9 113 42.5
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.2e-18 95.9 112 44.6
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 2.8e-18 95.5 117 42.7
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 2.8e-18 95.5 114 42.1
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 2.8e-18 95.5 114 42.1
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 8.2e-18 94.0 114 42.1
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 1.4e-17 93.2 112 42.0
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 1.8e-17 92.8 123 44.7
Atru.chr1.3245 Acer truncatum HOM05D005672 ORTHO05D003038 3.1e-17 92.0 104 43.3
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 3.1e-17 92.0 102 42.2
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 3.1e-17 92.0 110 43.6
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 4.1e-17 91.7 112 41.1
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 9.0e-17 90.5 88 50.0
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 1.2e-16 90.1 121 39.7
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 1.5e-16 89.7 111 45.0
FvH4_6g30990 Fragaria vesca HOM05D005672 ORTHO05D003038 3.4e-16 88.6 110 44.5
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 3.4e-16 88.6 119 40.3
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 3.4e-16 88.6 119 40.3
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 1.3e-15 86.7 114 38.6
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 2.2e-15 85.9 109 41.3
HanXRQChr10g0314951 Helianthus annuus HOM05D005672 ORTHO05D003038 2.2e-15 85.9 115 41.7
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 2.2e-15 85.9 109 40.4
ECA234G3627 Erigeron canadensis HOM05D005672 ORTHO05D003038 2.9e-15 85.5 86 47.7
Prupe.3G072600 Prunus persica HOM05D005672 ORTHO05D003038 2.9e-15 85.5 103 40.8
HanXRQChr14g0455911 Helianthus annuus HOM05D005672 ORTHO05D003038 5.0e-15 84.7 117 42.7
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 1.9e-14 82.8 112 41.1
PGR031G0657 Punica granatum HOM05D005672 ORTHO05D003038 4.2e-14 81.6 119 37.8
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 5.5e-14 81.3 112 38.4
ClCG09G002270 Citrullus lanatus HOM05D005672 ORTHO05D003038 7.2e-14 80.9 99 39.4
Nn2g11778 Nelumbo nucifera HOM05D005672 ORTHO05D003038 7.2e-14 80.9 113 38.9
Prupe.3G073200 Prunus persica HOM05D005672 ORTHO05D003038 7.2e-14 80.9 114 38.6
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.2e-13 80.1 110 40.9
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 1.2e-13 80.1 118 39.0
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.6e-13 79.7 113 40.7
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 1.6e-13 79.7 105 37.1
Lsat_1_v5_gn_5_129980 Lactuca sativa HOM05D005672 ORTHO05D003038 2.7e-13 79.0 123 35.8
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 2.7e-13 79.0 131 35.1
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 3.6e-13 78.6 111 36.0
Ciclev10026944m.g Citrus clementina HOM05D005672 ORTHO05D003038 4.6e-13 78.2 113 43.4
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 4.6e-13 78.2 113 39.8
Sed0013481 Sechium edule HOM05D005672 ORTHO05D003038 6.1e-13 77.8 114 41.2
Sed0008395 Sechium edule HOM05D005672 ORTHO05D003038 1.0e-12 77.0 110 36.4
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.4e-12 76.6 118 38.1
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 1.4e-12 76.6 120 35.0
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 1.8e-12 76.3 120 35.8
Nn8g39246 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.8e-12 76.3 113 38.1
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 1.8e-12 76.3 118 35.6
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 2.3e-12 75.9 109 33.9
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 3.0e-12 75.5 60 55.0
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 3.0e-12 75.5 118 35.6
Ciclev10027058m.g Citrus clementina HOM05D005672 ORTHO05D003038 3.9e-12 75.1 88 50.0
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 8.8e-12 73.9 108 37.0
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.1e-11 73.6 122 34.4
Nn8g39240 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.1e-11 73.6 102 40.2
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 1.1e-11 73.6 125 33.6
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 1.5e-11 73.2 122 35.2
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 1.5e-11 73.2 121 33.9
Carub.0001s1235 Capsella rubella HOM05D007482 ORTHO05D003038 2.5e-11 72.4 119 37.8
Ciclev10027444m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.5e-11 72.4 113 41.6
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 3.3e-11 72.0 121 33.1
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 3.3e-11 72.0 121 33.1
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 3.3e-11 72.0 121 33.1
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 3.3e-11 72.0 121 33.1
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 3.3e-11 72.0 121 33.1
MELO3C023361.2 Cucumis melo HOM05D005672 ORTHO05D003038 3.3e-11 72.0 90 38.9
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 3.3e-11 72.0 118 34.7
CiPaw.02G152000 Carya illinoinensis HOM05D005672 ORTHO05D003038 5.7e-11 71.2 110 36.4
MELO3C030573.2 Cucumis melo HOM05D005672 ORTHO05D003038 5.7e-11 71.2 106 37.7
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 7.4e-11 70.9 112 35.7
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 9.7e-11 70.5 120 34.2
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 9.7e-11 70.5 113 38.1
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 9.7e-11 70.5 121 35.5
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 1.3e-10 70.1 117 37.6
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 2.2e-10 69.3 114 36.8
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 2.2e-10 69.3 114 36.8
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 2.2e-10 69.3 114 35.1
AT1G12660 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 2.8e-10 68.9 122 32.0
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 3.7e-10 68.6 121 32.2
Duzib192G0249 Durio zibethinus HOM05D005672 ORTHO05D003038 3.7e-10 68.6 85 42.4
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 4.8e-10 68.2 125 32.8
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 4.8e-10 68.2 122 34.4
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 4.8e-10 68.2 130 28.5
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 4.8e-10 68.2 122 34.4
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 4.8e-10 68.2 114 33.3
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 6.3e-10 67.8 110 39.1
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 8.2e-10 67.4 121 32.2
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 8.2e-10 67.4 116 37.1
Nn8g39241 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.4e-09 66.6 115 35.7
Nn8g39243 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.4e-09 66.6 66 47.0
C05p10610 Brassica napus HOM05D007482 ORTHO05D003038 2.4e-09 65.9 155 29.7
BolC5t29803H Brassica oleracea HOM05D007482 ORTHO05D003038 2.4e-09 65.9 155 29.7
Duzib192G0015 Durio zibethinus HOM05D005672 ORTHO05D003038 2.4e-09 65.9 85 43.5
Solyc03g120290.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 2.4e-09 65.9 120 33.3
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 3.1e-09 65.5 117 32.5
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 3.1e-09 65.5 120 32.5
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 3.1e-09 65.5 133 29.3
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 3.1e-09 65.5 123 34.1
MELO3C023363.2 Cucumis melo HOM05D005672 ORTHO05D003038 3.1e-09 65.5 83 37.3
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 4.1e-09 65.1 110 37.3
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 4.1e-09 65.1 110 37.3
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 4.1e-09 65.1 132 28.8
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 4.1e-09 65.1 116 36.2
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 6.9e-09 64.3 110 35.5
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 6.9e-09 64.3 133 30.8
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 9.1e-09 63.9 116 29.3
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 1.2e-08 63.5 133 30.1
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 1.2e-08 63.5 136 27.9
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 1.5e-08 63.2 115 33.0
Thhalv10009569m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.5e-08 63.2 103 38.8
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 1.5e-08 63.2 119 34.5
Sed0007263 Sechium edule HOM05D005672 ORTHO05D003038 2.6e-08 62.4 92 39.1
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 3.4e-08 62.0 76 36.8
DCAR_026309 Daucus carota HOM05D005672 ORTHO05D003038 3.4e-08 62.0 110 36.4
Nn8g39242 Nelumbo nucifera HOM05D005672 ORTHO05D003038 3.4e-08 62.0 69 43.5
Prupe.3G073100 Prunus persica HOM05D005672 ORTHO05D003038 3.4e-08 62.0 114 35.1
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 4.5e-08 61.6 132 31.8
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 4.5e-08 61.6 121 35.5
COL.COLO4_26662 Corchorus olitorius HOM05D005672 ORTHO05D003038 1.3e-07 60.1 99 44.4
SGA_v2.0_scaffold5G02600 Striga asiatica HOM05D005672 ORTHO05D003038 1.3e-07 60.1 82 36.6
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 1.7e-07 59.7 127 30.7
AL1G24120 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 2.2e-07 59.3 92 34.8
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 2.2e-07 59.3 132 31.1
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 2.2e-07 59.3 128 28.9
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 2.2e-07 59.3 114 35.1
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 2.9e-07 58.9 131 30.5
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 2.9e-07 58.9 131 30.5
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 3.8e-07 58.5 102 31.4
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 3.8e-07 58.5 120 32.5
CAN.G438.58 Capsicum annuum HOM05D005672 ORTHO05D003038 3.8e-07 58.5 123 30.1
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 3.8e-07 58.5 104 34.6
Sopen03g039180 Solanum pennellii HOM05D005672 ORTHO05D003038 3.8e-07 58.5 123 30.9
Atru.chr1.3239 Acer truncatum HOM05D005672 ORTHO05D003038 5.0e-07 58.2 116 31.0
Aqoxy7G01810 Aquilegia oxysepala HOM05D005672 ORTHO05D003038 5.0e-07 58.2 112 30.4
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 5.0e-07 58.2 101 29.7
ClCG09G002220 Citrullus lanatus HOM05D005672 ORTHO05D003038 8.5e-07 57.4 101 35.6
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 1.1e-06 57.0 120 31.7
BolC3t18270H Brassica oleracea HOM05D007482 ORTHO05D003038 1.1e-06 57.0 101 29.7
BraA06t26175Z Brassica rapa HOM05D007482 ORTHO05D003038 1.1e-06 57.0 101 29.7
BraA09t41717Z Brassica rapa HOM05D007482 ORTHO05D003038 1.1e-06 57.0 47 51.1
Ciclev10026837m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.1e-06 57.0 62 50.0
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 1.4e-06 56.6 116 31.9
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 2.5e-06 55.8 127 29.9
Dinv30220 Davidia involucrata HOM05D009909 ORTHO05D011748 4.2e-06 55.1 109 28.4
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 7.2e-06 54.3 127 26.8


User provided reference genes

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