Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 0.0e+00 1402.5 730 100.0
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.5e-282 976.1 712 75.8
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 7.9e-276 953.7 712 74.2
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.4e-275 953.0 712 74.7
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 1.3e-273 946.4 673 77.4
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 1.3e-241 840.1 640 75.0
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.7e-231 805.8 643 70.9
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.9e-229 799.7 642 70.2
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 2.1e-228 796.2 643 70.0
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 2.1e-191 673.3 543 69.8
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 1.7e-140 504.2 823 44.2
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 5.0e-129 466.1 897 39.5
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 8.9e-126 455.3 742 43.3
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 3.4e-125 453.4 827 42.0
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 3.4e-125 453.4 755 41.5
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 7.5e-125 452.2 904 36.6
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 2.9e-124 450.3 739 43.2
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 4.1e-123 446.4 878 41.6
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 1.2e-122 444.9 765 42.7
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 2.0e-122 444.1 515 55.0
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 2.3e-118 430.6 758 41.4
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 1.2e-117 428.3 759 41.4
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 1.4e-115 421.4 763 41.7
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.3e-113 414.8 769 39.9
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.3e-113 414.8 769 39.9
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.2e-109 401.7 773 40.9
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 2.3e-105 387.5 845 35.7
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 4.3e-104 383.3 847 35.9
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 8.1e-103 379.0 754 40.2
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 3.1e-102 377.1 797 39.3
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 6.4e-100 369.4 759 39.0
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 8.7e-97 359.0 750 38.9
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 2.9e-92 344.0 742 38.0
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 3.8e-92 343.6 741 38.9
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 4.9e-92 343.2 746 37.4
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 8.4e-92 342.4 378 52.6
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 1.0e-89 335.5 754 34.6
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 3.3e-88 330.5 745 35.8
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 2.1e-87 327.8 725 38.3
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 6.2e-87 326.2 756 34.9
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 6.2e-87 326.2 784 33.2
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.8e-86 324.7 394 49.0
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 3.4e-85 320.5 734 36.2
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 5.8e-85 319.7 771 35.0
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 2.9e-84 317.4 737 36.2
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 2.4e-83 314.3 746 35.8
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 4.6e-82 310.1 777 34.7
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.0e-81 307.4 747 34.9
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 5.6e-80 303.1 740 35.4
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 2.8e-79 300.8 745 35.7
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 4.0e-78 297.0 782 33.6
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 5.3e-78 296.6 762 34.9
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.4e-77 293.9 784 33.8
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 7.6e-77 292.7 548 38.1
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 2.5e-75 287.7 818 33.1
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 3.2e-75 287.3 776 32.9
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 4.2e-75 287.0 737 34.2
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 1.6e-74 285.0 823 32.3
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 2.1e-74 284.6 742 35.6
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 1.8e-73 281.6 845 32.1
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 3.0e-73 280.8 811 33.2
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 3.0e-73 280.8 948 31.1
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 8.7e-73 279.3 694 35.4
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 9.6e-72 275.8 734 34.2
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 2.8e-71 274.2 766 34.1
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 2.8e-71 274.2 762 34.1
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 3.7e-71 273.9 738 34.6
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.4e-70 271.9 667 35.1
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 2.4e-70 271.2 719 36.0
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 3.4e-69 267.3 721 32.0
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 4.5e-69 266.9 781 33.2
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 1.0e-68 265.8 751 32.9
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.2e-68 264.6 741 34.0
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 3.8e-68 263.8 804 31.8
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 1.4e-67 261.9 697 34.1
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 2.1e-66 258.1 854 31.9
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 6.1e-66 256.5 737 33.9
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 2.5e-64 251.1 787 30.6
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 3.3e-64 250.8 766 30.5
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 5.7e-64 250.0 774 31.9
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 1.3e-63 248.8 778 32.0
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 6.3e-63 246.5 703 33.7
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 1.4e-62 245.4 741 32.1
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 5.3e-62 243.4 693 33.0
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 6.9e-62 243.0 724 32.2
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 1.5e-61 241.9 798 29.6
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 2.0e-61 241.5 793 30.4
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 4.5e-61 240.4 733 32.2
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 4.5e-61 240.4 717 33.1
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 4.5e-61 240.4 745 32.8
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 5.9e-61 240.0 933 29.0
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 5.0e-60 236.9 745 32.1
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 5.0e-60 236.9 734 30.9
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 3.2e-59 234.2 744 31.3
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 4.2e-59 233.8 658 33.0
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 2.3e-57 228.0 416 39.9
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 5.1e-57 226.9 730 29.7
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 5.1e-57 226.9 723 30.8
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 6.7e-57 226.5 946 29.2
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 5.7e-56 223.4 742 32.2
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 7.4e-56 223.0 388 40.5
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 3.7e-55 220.7 696 33.6
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 6.3e-55 219.9 795 29.4
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 1.8e-54 218.4 771 28.9
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 5.3e-54 216.9 724 29.6
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 4.5e-53 213.8 743 30.6
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 4.5e-53 213.8 694 28.7
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 7.7e-53 213.0 737 31.5
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 1.3e-52 212.2 731 30.0
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 8.5e-52 209.5 605 33.2
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 1.6e-50 205.3 696 30.2
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 7.9e-50 203.0 933 27.5
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 3.9e-49 200.7 948 25.8
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 5.1e-49 200.3 810 28.9
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 2.0e-48 198.4 752 28.9
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 2.0e-48 198.4 424 35.1
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 2.2e-47 194.9 580 33.3
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 2.6e-45 188.0 746 28.2
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 1.3e-44 185.7 398 36.4
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 4.1e-38 164.1 131 69.5
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 9.1e-38 162.9 641 29.6
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 6.8e-33 146.7 609 28.7
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 8.8e-33 146.4 778 28.8
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 6.3e-31 140.2 243 38.7
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 5.0e-28 130.6 181 43.6
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 6.8e-25 120.2 148 50.0
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 2.0e-24 118.6 812 23.3
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.3e-23 115.9 148 48.6
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 4.9e-23 114.0 157 47.1
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 3.3e-19 101.3 193 38.3
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 3.6e-18 97.8 789 26.2
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 2.3e-17 95.1 551 24.9
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 4.0e-17 94.4 103 52.4
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 9.8e-16 89.7 130 44.6
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 3.7e-15 87.8 172 39.0
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 4.9e-15 87.4 671 25.0
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 1.1e-14 86.3 96 51.0
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 1.4e-14 85.9 193 35.2
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 1.4e-14 85.9 144 39.6
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 4.1e-14 84.3 748 24.7
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 9.2e-14 83.2 73 54.8
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 2.9e-12 78.2 144 38.9
Cpa.g.sc10.163 Carica papaya HOM05D004831 ORTHO05D003975 3.9e-12 77.8 41 80.5
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 6.8e-09 67.0 388 25.3
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 1.5e-08 65.9 52 63.5
Cre02.g079250 Chlamydomonas reinhardtii HOM05D004831 ORTHO05D003975 1.7e-07 62.4 61 49.2


User provided reference genes

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