Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G081100 Theobroma cacao HOM05D002035 ORTHO05D002032 6.3e-115 417.5 226 100.0
Gohir.D05G127600 Gossypium hirsutum HOM05D002035 ORTHO05D002032 2.5e-63 246.1 176 71.6
Gorai.009G131700 Gossypium raimondii HOM05D002035 ORTHO05D002032 1.3e-62 243.8 178 70.2
Gohir.A05G126700 Gossypium hirsutum HOM05D002035 ORTHO05D002032 4.9e-59 231.9 173 68.2
COL.COLO4_30316 Corchorus olitorius HOM05D002035 ORTHO05D002032 6.1e-49 198.4 196 57.7
CiPaw.01G241400 Carya illinoinensis HOM05D002035 ORTHO05D002032 1.0e-48 197.6 166 55.4
Duzib192G0363 Durio zibethinus HOM05D002035 ORTHO05D002032 1.9e-47 193.4 134 67.2
Actinidia08824 Actinidia chinensis HOM05D002035 ORTHO05D002032 1.3e-46 190.7 166 60.2
Manes.11G050600 Manihot esculenta HOM05D002035 ORTHO05D002032 1.6e-46 190.3 176 52.8
Lj9A505T67 Lonicera japonica HOM05D002035 ORTHO05D002032 2.8e-46 189.5 170 56.5
Manes.04G120300 Manihot esculenta HOM05D002035 ORTHO05D002032 5.3e-45 185.3 175 56.0
Ciclev10026432m.g Citrus clementina HOM05D002035 ORTHO05D002032 1.5e-44 183.7 172 55.2
Potri.003G057700 Populus trichocarpa HOM05D002035 ORTHO05D002032 1.5e-44 183.7 166 59.6
Nn2g11853 Nelumbo nucifera HOM05D002035 ORTHO05D002032 2.2e-43 179.9 136 59.6
Potri.001G176800 Populus trichocarpa HOM05D002035 ORTHO05D002032 2.9e-43 179.5 165 54.5
QL05p025724 Quercus lobata HOM05D002035 ORTHO05D002032 4.2e-42 175.6 171 49.7
CSS0016789 Camellia sinensis var. sinensis HOM05D002035 ORTHO05D002032 5.5e-42 175.3 156 55.8
DCAR_011278 Daucus carota HOM05D002035 ORTHO05D002032 5.1e-40 168.7 164 49.4
DCAR_021322 Daucus carota HOM05D002035 ORTHO05D002032 3.7e-38 162.5 165 48.5
Atru.chr1.3215 Acer truncatum HOM05D002035 ORTHO05D002032 1.1e-37 161.0 171 47.4
Dinv36594 Davidia involucrata HOM05D002035 ORTHO05D002032 1.4e-37 160.6 129 52.7
Aqoxy7G01891 Aquilegia oxysepala HOM05D002035 ORTHO05D002032 5.3e-37 158.7 137 47.4
Thecc.09G117000 Theobroma cacao HOM05D002035 ORTHO05D002032 3.4e-36 156.0 172 48.3
TWI12G0998 Tripterygium wilfordii HOM05D002035 ORTHO05D002032 3.4e-36 156.0 178 46.1
Prupe.3G075500 Prunus persica HOM05D002035 ORTHO05D002032 5.9e-36 155.2 165 54.5
Migut.I00835 Erythranthe guttata HOM05D002035 ORTHO05D002032 5.0e-35 152.1 128 50.8
Sabra03G0033200 Salix brachista HOM05D002035 ORTHO05D002032 1.1e-34 151.0 244 41.8
PSO063G6019 Papaver somniferum HOM05D002035 ORTHO05D002032 6.1e-33 145.2 158 44.9
Gohir.D06G057900 Gossypium hirsutum HOM05D002035 ORTHO05D002032 3.0e-32 142.9 160 40.6
Gorai.010G068000 Gossypium raimondii HOM05D002035 ORTHO05D002032 5.1e-32 142.1 160 40.0
Atru.chr1.3213 Acer truncatum HOM05D002035 ORTHO05D002032 3.3e-31 139.4 138 50.7
PGR102G2476 Punica granatum HOM05D002035 ORTHO05D002032 4.4e-31 139.0 174 41.4
Glyma.08G208200 Glycine max HOM05D002035 ORTHO05D002032 9.7e-31 137.9 216 36.6
Sopen03g038780 Solanum pennellii HOM05D002035 ORTHO05D002032 2.2e-30 136.7 130 43.8
Lj7A639T57 Lonicera japonica HOM05D002035 ORTHO05D002032 3.7e-30 136.0 169 47.3
CAN.G438.100 Capsicum annuum HOM05D002035 ORTHO05D002032 4.8e-30 135.6 139 43.2
Solyc03g119900.4 Solanum lycopersicum HOM05D002035 ORTHO05D002032 8.2e-30 134.8 135 43.0
Gohir.A06G059700 Gossypium hirsutum HOM05D002035 ORTHO05D002032 1.8e-29 133.7 160 38.1
COL.COLO4_34949 Corchorus olitorius HOM05D002035 ORTHO05D002032 3.1e-29 132.9 170 41.2
Atru.chr1.3214 Acer truncatum HOM05D002035 ORTHO05D002032 7.0e-29 131.7 133 48.1
Psat7g253600 Pisum sativum HOM05D002035 ORTHO05D002032 9.1e-29 131.3 217 35.5
Peaxi162Scf00015g00535 Petunia axillaris HOM05D002035 ORTHO05D002032 1.2e-28 131.0 149 41.6
Lj3g0011923 Lotus japonicus HOM05D002035 ORTHO05D002032 2.0e-28 130.2 177 40.1
Phvul.010G152100 Phaseolus vulgaris HOM05D002035 ORTHO05D002032 2.6e-28 129.8 214 36.0
Sed0022414 Sechium edule HOM05D002035 ORTHO05D002032 3.5e-28 129.4 134 47.8
ClCG09G002410 Citrullus lanatus HOM05D002035 ORTHO05D002032 2.9e-27 126.3 164 45.1
VMungo0331G0720 Vigna mungo HOM05D002035 ORTHO05D002032 8.5e-27 124.8 182 38.5
TPR.G27503 Trifolium pratense HOM05D002035 ORTHO05D002032 1.9e-26 123.6 125 41.6
ECA234G2382 Erigeron canadensis HOM05D002035 ORTHO05D002032 4.2e-26 122.5 136 45.6
FAN14G5962 Fragaria x ananassa HOM05D002035 ORTHO05D002032 5.5e-26 122.1 156 39.7
PSO782G4178 Papaver somniferum HOM05D002035 ORTHO05D002032 2.0e-23 113.6 163 35.6
arahy.Tifrunner.gnm1.ann1.D6QP22 Arachis hypogaea HOM05D002035 ORTHO05D002032 4.4e-23 112.5 148 40.5
arahy.Tifrunner.gnm1.ann1.KCS4U6 Arachis hypogaea HOM05D002035 ORTHO05D002032 4.4e-23 112.5 148 40.5
Peaxi162Scf00316g01013 Petunia axillaris HOM05D002035 ORTHO05D002032 4.4e-23 112.5 172 34.9
Zm00001eb004630 Zea mays HOM05D002035 ORTHO05D002032 5.7e-23 112.1 137 40.1
MBI05_g12591_MAGBIO Magnolia biondii HOM05D002035 ORTHO05D002032 9.7e-23 111.3 164 38.4
CDE10G1332 Ceratophyllum demersum HOM05D002035 ORTHO05D002032 1.7e-22 110.5 140 37.1
THA.LOC104803053 Tarenaya hassleriana HOM05D002035 ORTHO05D002032 1.7e-22 110.5 138 39.1
Nitab4.5_0001046g0030 Nicotiana tabacum HOM05D002035 ORTHO05D002032 2.8e-22 109.8 169 36.1
CAN.G1402.15 Capsicum annuum HOM05D002035 ORTHO05D002032 3.7e-22 109.4 173 35.8
Eucgr.F02570 Eucalyptus grandis HOM05D002035 ORTHO05D002032 6.3e-22 108.6 149 40.9
Nitab4.5_0000085g0010 Nicotiana tabacum HOM05D002035 ORTHO05D002032 6.3e-22 108.6 174 35.6
HanXRQChr04g0106661 Helianthus annuus HOM05D002035 ORTHO05D002032 8.2e-22 108.2 173 35.3
VMungo0720G3013 Vigna mungo HOM05D002035 ORTHO05D002032 8.2e-22 108.2 169 36.7
Dinv14038 Davidia involucrata HOM05D002035 ORTHO05D002032 2.4e-21 106.7 141 38.3
MBI11_g35356_MAGBIO Magnolia biondii HOM05D002035 ORTHO05D002032 2.4e-21 106.7 138 38.4
TAR365G0040 Trochodendron aralioides HOM05D002035 ORTHO05D002032 4.1e-21 105.9 176 34.7
HanXRQChr04g0096381 Helianthus annuus HOM05D002035 ORTHO05D002032 5.3e-21 105.5 98 48.0
PGSC0003DMG400006454 Solanum tuberosum HOM05D002035 ORTHO05D002032 9.1e-21 104.8 180 33.9
THA.LOC104827557 Tarenaya hassleriana HOM05D002035 ORTHO05D002032 9.1e-21 104.8 131 38.9
DCAR_027239 Daucus carota HOM05D002035 ORTHO05D002032 1.2e-20 104.4 173 35.3
Lsat_1_v5_gn_1_7181 Lactuca sativa HOM05D002035 ORTHO05D002032 1.2e-20 104.4 150 37.3
MD04G1222300 Malus domestica HOM05D002035 ORTHO05D002032 1.6e-20 104.0 143 37.8
Os11g0582000 Oryza sativa ssp. japonica HOM05D002035 ORTHO05D002032 1.6e-20 104.0 143 43.4
Zm00001eb200520 Zea mays HOM05D002035 ORTHO05D002032 1.6e-20 104.0 144 35.4
ATR0665G594 Amborella trichopoda HOM05D002035 ORTHO05D002032 3.5e-20 102.8 177 33.9
Prupe.6G341400 Prunus persica HOM05D002035 ORTHO05D002032 4.5e-20 102.4 145 38.6
Sopen09g031430 Solanum pennellii HOM05D002035 ORTHO05D002032 4.5e-20 102.4 180 33.9
unitig_899.g14874 Utricularia gibba HOM05D002035 ORTHO05D002032 4.5e-20 102.4 133 37.6
Aqoxy2G03450 Aquilegia oxysepala HOM05D002035 ORTHO05D002032 5.9e-20 102.1 180 32.2
PSO566G0113 Papaver somniferum HOM05D002035 ORTHO05D002032 5.9e-20 102.1 176 31.8
Sabra10G0060600 Salix brachista HOM05D002035 ORTHO05D002032 5.9e-20 102.1 141 36.9
Actinidia40123 Actinidia chinensis HOM05D002035 ORTHO05D002032 7.7e-20 101.7 178 34.3
Ca_12159_v3 Cicer arietinum L. HOM05D002035 ORTHO05D002032 7.7e-20 101.7 152 34.2
Solyc09g082570.3 Solanum lycopersicum HOM05D002035 ORTHO05D002032 7.7e-20 101.7 180 33.3
Migut.N00207 Erythranthe guttata HOM05D002035 ORTHO05D002032 1.0e-19 101.3 150 41.3
CSS0047801 Camellia sinensis var. sinensis HOM05D002035 ORTHO05D002032 1.3e-19 100.9 146 34.2
PSO170G3456 Papaver somniferum HOM05D002035 ORTHO05D002032 1.3e-19 100.9 163 33.7
PSO782G0531 Papaver somniferum HOM05D002035 ORTHO05D002032 1.3e-19 100.9 175 34.9
Glyma.10G244800 Glycine max HOM05D002035 ORTHO05D002032 1.7e-19 100.5 142 36.6
PSO210G4724 Papaver somniferum HOM05D002035 ORTHO05D002032 1.7e-19 100.5 165 33.3
Aqoxy5G00414 Aquilegia oxysepala HOM05D002035 ORTHO05D002032 2.2e-19 100.1 177 33.9
MD13G1198400 Malus domestica HOM05D002035 ORTHO05D002032 2.9e-19 99.8 141 35.5
QL06p001273 Quercus lobata HOM05D002035 ORTHO05D002032 2.9e-19 99.8 141 36.2
Hund12089 Selenicereus undatus HOM05D002035 ORTHO05D002032 2.9e-19 99.8 179 32.4
Sc13g0004670 Simmondsia chinensis HOM05D002035 ORTHO05D002032 2.9e-19 99.8 160 33.1
CiPaw.08G124900 Carya illinoinensis HOM05D002035 ORTHO05D002032 3.8e-19 99.4 176 33.5
Phvul.007G061100 Phaseolus vulgaris HOM05D002035 ORTHO05D002032 3.8e-19 99.4 170 33.5
QL06p001256 Quercus lobata HOM05D011240 ORTHO05D002032 3.8e-19 99.4 141 36.2
MD16G1198500 Malus domestica HOM05D002035 ORTHO05D002032 5.0e-19 99.0 140 34.3
HPP92_007928 Vanilla planifolia HOM05D002035 ORTHO05D002032 5.0e-19 99.0 128 38.3
Oeu064254.1 Olea europaea HOM05D002035 ORTHO05D002032 8.5e-19 98.2 180 33.9
MD12G1238500 Malus domestica HOM05D002035 ORTHO05D002032 1.5e-18 97.4 145 36.6
CiPaw.07G065300 Carya illinoinensis HOM05D002035 ORTHO05D002032 1.9e-18 97.1 166 34.9
Glyma.02G004800 Glycine max HOM05D002035 ORTHO05D002032 1.9e-18 97.1 170 30.6
Eucgr.H03419 Eucalyptus grandis HOM05D002035 ORTHO05D002032 2.5e-18 96.7 180 33.3
Carub.0007s2740 Capsella rubella HOM05D002035 ORTHO05D002032 3.2e-18 96.3 135 34.8
Cc03_g04200 Coffea canephora HOM05D002035 ORTHO05D002032 3.2e-18 96.3 163 34.4
Cpa.g.sc117.77 Carica papaya HOM05D002035 ORTHO05D002032 4.2e-18 95.9 155 34.8
Lj6g0008601 Lotus japonicus HOM05D002035 ORTHO05D002032 4.2e-18 95.9 141 34.0
Potri.008G156800 Populus trichocarpa HOM05D002035 ORTHO05D002032 4.2e-18 95.9 141 38.3
GSVIVG01021829001 Vitis vinifera HOM05D002035 ORTHO05D002032 4.2e-18 95.9 142 35.9
Cpa.g.sc44.114 Carica papaya HOM05D002035 ORTHO05D002032 5.5e-18 95.5 166 34.3
ECA247G0414 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.5e-18 95.5 157 32.5
SalBow3G4166 Salvia bowleyana HOM05D002035 ORTHO05D002032 5.5e-18 95.5 149 34.2
BcaC07g37847 Brassica carinata HOM05D002035 ORTHO05D002032 7.2e-18 95.1 155 33.5
A08p11430 Brassica napus HOM05D002035 ORTHO05D002032 7.2e-18 95.1 155 33.5
SalBow4G2390 Salvia bowleyana HOM05D002035 ORTHO05D002032 7.2e-18 95.1 150 34.0
Cfa008455 Carpinus fangiana HOM05D002035 ORTHO05D002032 1.2e-17 94.4 142 35.9
Prupe.1G020200 Prunus persica HOM05D002035 ORTHO05D002032 1.2e-17 94.4 144 34.7
SalBow2G1507 Salvia bowleyana HOM05D002035 ORTHO05D002032 1.2e-17 94.4 169 34.3
Dinv05369 Davidia involucrata HOM05D002035 ORTHO05D002032 1.6e-17 94.0 146 34.2
Lj5A64T49 Lonicera japonica HOM05D002035 ORTHO05D002032 1.6e-17 94.0 97 45.4
Sabra08G0119400 Salix brachista HOM05D002035 ORTHO05D002032 1.6e-17 94.0 141 37.6
Dinv04802 Davidia involucrata HOM05D002035 ORTHO05D002032 2.1e-17 93.6 152 32.2
QL03p024990 Quercus lobata HOM05D002035 ORTHO05D002032 2.1e-17 93.6 143 35.7
Medtr7g114890 Medicago truncatula HOM05D002035 ORTHO05D002032 6.1e-17 92.0 147 30.6
SGA_v2.0_scaffold3661G54375 Striga asiatica HOM05D002035 ORTHO05D002032 6.1e-17 92.0 129 34.9
CARHR221240 Cardamine hirsuta HOM05D002035 ORTHO05D002032 1.0e-16 91.3 136 36.8
FAN09G0076 Fragaria x ananassa HOM05D002035 ORTHO05D002032 1.4e-16 90.9 173 32.4
FAN14G3418 Fragaria x ananassa HOM05D002035 ORTHO05D002032 1.4e-16 90.9 173 32.4
Lsat_1_v5_gn_4_134060 Lactuca sativa HOM05D002035 ORTHO05D002032 4.0e-16 89.4 172 30.8
Actinidia23538 Actinidia chinensis HOM05D002035 ORTHO05D002032 5.2e-16 89.0 159 34.6
MD17G1198900 Malus domestica HOM05D002035 ORTHO05D002032 5.2e-16 89.0 85 48.2
FvH4_6g03170 Fragaria vesca HOM05D002035 ORTHO05D002032 6.8e-16 88.6 173 31.2
FAN02G0768 Fragaria x ananassa HOM05D002035 ORTHO05D002032 6.8e-16 88.6 166 31.9
FAN05G4355 Fragaria x ananassa HOM05D002035 ORTHO05D002032 8.8e-16 88.2 171 32.2
FAN05G0128 Fragaria x ananassa HOM05D002035 ORTHO05D002032 2.6e-15 86.7 171 31.6
RcHm_v2.0_Chr3g0451451 Rosa chinensis HOM05D002035 ORTHO05D002032 3.4e-15 86.3 173 32.4
MSTRG.9955 Avicennia marina HOM05D002035 ORTHO05D002032 5.7e-15 85.5 168 32.1
CARHR221230 Cardamine hirsuta HOM05D002035 ORTHO05D002032 9.8e-15 84.7 136 34.6
FAN02G1724 Fragaria x ananassa HOM05D002035 ORTHO05D002032 9.8e-15 84.7 180 33.9
Sc09g0003860 Simmondsia chinensis HOM05D002035 ORTHO05D002032 1.3e-14 84.3 130 36.2
vmacro08364 Vaccinium macrocarpon HOM05D002035 ORTHO05D002032 1.7e-14 84.0 183 30.6
Dinv44571 Davidia involucrata HOM05D002035 ORTHO05D002032 3.7e-14 82.8 154 30.5
FvH4_6g30802 Fragaria vesca HOM05D002035 ORTHO05D002032 4.8e-14 82.4 65 52.3
Glyma.07G033900 Glycine max HOM05D002035 ORTHO05D002032 4.8e-14 82.4 69 52.2
SEGI_28156 Sequoiadendron giganteum HOM05D002035 ORTHO05D002032 4.8e-14 82.4 172 27.9
MSTRG.24727 Avicennia marina HOM05D002035 ORTHO05D002032 1.8e-13 80.5 126 32.5
FAN14G0185 Fragaria x ananassa HOM05D002035 ORTHO05D002032 1.8e-13 80.5 173 30.1
FvH4_6g30801 Fragaria vesca HOM05D002035 ORTHO05D002032 3.1e-13 79.7 65 49.2
vmacro05241 Vaccinium macrocarpon HOM05D002035 ORTHO05D002032 4.1e-13 79.3 123 40.7
Zm00001eb047800 Zea mays HOM05D002035 ORTHO05D002032 4.1e-13 79.3 177 31.6
SEGI_24731 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 9.1e-13 78.2 168 27.4
FvH4_6g03180 Fragaria vesca HOM05D002035 ORTHO05D002032 2.0e-12 77.0 173 29.5
ATR0083G065 Amborella trichopoda HOM05D002035 ORTHO05D002032 4.5e-12 75.9 87 41.4
Cc03_g05680 Coffea canephora HOM05D002035 ORTHO05D002032 1.3e-11 74.3 120 33.3
Pp3c13_8450 Physcomitrium patens HOM05D002035 ORTHO05D002032 6.5e-11 72.0 172 30.8
Oeu021954.1 Olea europaea HOM05D002035 ORTHO05D002032 8.5e-11 71.6 60 48.3
Pp3c4_10000 Physcomitrium patens HOM05D002035 ORTHO05D002032 1.1e-10 71.2 153 30.1
Dinv38068 Davidia involucrata HOM05D004697 ORTHO05D006015 2.5e-10 70.1 135 34.1
Gohir.A08G240401 Gossypium hirsutum HOM05D002035 ORTHO05D002032 1.0e-08 64.7 81 38.3
Nitab4.5_0013051g0010 Nicotiana tabacum HOM05D002035 ORTHO05D002032 1.8e-08 63.9 64 43.8
FAN22G2357 Fragaria x ananassa HOM05D002035 ORTHO05D002032 5.2e-08 62.4 93 36.6
FAN14G0966 Fragaria x ananassa HOM05D002035 ORTHO05D002032 8.8e-08 61.6 44 56.8
Nitab4.5_0000410g0290 Nicotiana tabacum HOM05D002035 ORTHO05D002032 1.2e-07 61.2 37 64.9


User provided reference genes

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