Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G078500 Theobroma cacao HOM05D029474 ORTHO05D036048 1.7e-111 406.0 198 100.0
Thecc.04G115600 Theobroma cacao HOM05D000003 ORTHO05D002259 1.7e-26 123.6 162 43.2
Thecc.05G093100 Theobroma cacao HOM05D000003 ORTHO05D002259 4.4e-19 99.0 178 33.7
Thecc.09G263100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.3e-18 97.4 168 35.7
Atru.chr11.1073 Acer truncatum HOM05D000003 ORTHO05D002259 1.9e-14 83.6 176 28.4
Thecc.04G054400 Theobroma cacao HOM05D000003 ORTHO05D002259 1.9e-14 83.6 161 32.9
Thecc.04G121700 Theobroma cacao HOM05D000003 ORTHO05D002259 1.9e-14 83.6 146 30.1
Thecc.05G083000 Theobroma cacao HOM05D000003 ORTHO05D002259 1.9e-14 83.6 121 33.9
TWI36G1780 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.9e-14 83.6 178 30.9
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 1.2e-13 80.9 147 35.4
Thecc.09G168800 Theobroma cacao HOM05D000003 ORTHO05D002259 1.2e-13 80.9 173 32.9
Thecc.06G083800 Theobroma cacao HOM05D000101 ORTHO05D000089 2.1e-13 80.1 148 32.4
Thecc.01G196800 Theobroma cacao HOM05D000003 ORTHO05D002259 2.7e-13 79.7 182 26.9
Atru.chr1.3974 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-12 77.4 176 31.2
Atru.chr2.2563 Acer truncatum HOM05D000003 ORTHO05D002259 1.8e-12 77.0 160 30.6
Atru.chr4.1942 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-12 77.0 202 27.7
COL.COLO4_23441 Corchorus olitorius HOM05D000003 ORTHO05D002259 5.2e-12 75.5 149 34.2
Thecc.05G076400 Theobroma cacao HOM05D000003 ORTHO05D002259 5.2e-12 75.5 224 27.7
Atru.chr6.253 Acer truncatum HOM05D000003 ORTHO05D002259 6.8e-12 75.1 175 30.3
Atru.chr10.950 Acer truncatum HOM05D000003 ORTHO05D002259 8.8e-12 74.7 153 30.1
Atru.chr11.2510 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-11 74.3 175 29.7
Atru.chr3.3914 Acer truncatum HOM05D000003 ORTHO05D002259 1.2e-11 74.3 179 28.5
Atru.chr6.1197 Acer truncatum HOM05D000003 ORTHO05D002259 1.2e-11 74.3 175 29.7
Atru.chr10.984 Acer truncatum HOM05D000502 ORTHO05D002259 2.0e-11 73.6 121 37.2
Atru.chr8.2073 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-11 73.6 172 29.7
Atru.chr2.2547 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-11 73.2 140 32.1
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-11 72.8 176 27.3
Atru.chr5.2215 Acer truncatum HOM05D000003 ORTHO05D002259 3.4e-11 72.8 178 29.2
COL.COLO4_36005 Corchorus olitorius HOM05D000003 ORTHO05D002259 3.4e-11 72.8 149 31.5
Atru.chr4.1973 Acer truncatum HOM05D000003 ORTHO05D002259 5.7e-11 72.0 182 27.5
Atru.chr4.3084 Acer truncatum HOM05D000003 ORTHO05D000004 5.7e-11 72.0 176 31.2
Atru.chr5.3360 Acer truncatum HOM05D000003 ORTHO05D002259 5.7e-11 72.0 177 27.1
Thecc.02G298600 Theobroma cacao HOM05D029474 ORTHO05D002259 5.7e-11 72.0 133 32.3
Atru.chr1.1674 Acer truncatum HOM05D000003 ORTHO05D002259 7.5e-11 71.6 190 28.9
Thecc.02G166000 Theobroma cacao HOM05D000003 ORTHO05D002259 7.5e-11 71.6 78 48.7
Atru.chr6.413 Acer truncatum HOM05D000003 ORTHO05D002259 1.3e-10 70.9 175 29.7
Atru.chr1.3846 Acer truncatum HOM05D000003 ORTHO05D002259 2.2e-10 70.1 174 29.9
Hma1.2p1_0055F.1_g031300 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.2e-10 70.1 176 29.0
Atru.chr6.103 Acer truncatum HOM05D000003 ORTHO05D002259 2.8e-10 69.7 151 33.8
Thecc.05G035100 Theobroma cacao HOM05D000003 ORTHO05D002259 3.7e-10 69.3 144 30.6
Atru.chr1.3206 Acer truncatum HOM05D000003 ORTHO05D002259 4.9e-10 68.9 178 27.5
EL10Ac3g05611 Beta vulgaris HOM05D000003 ORTHO05D000022 4.9e-10 68.9 135 34.1
Atru.chr2.3295 Acer truncatum HOM05D000003 ORTHO05D000004 6.3e-10 68.6 175 26.9
Atru.chr5.2369 Acer truncatum HOM05D000003 ORTHO05D002259 6.3e-10 68.6 184 26.6
Atru.chr6.184 Acer truncatum HOM05D000003 ORTHO05D002259 1.4e-09 67.4 176 28.4
Thecc.05G198700 Theobroma cacao HOM05D000003 ORTHO05D002259 1.4e-09 67.4 120 35.0
Thecc.K0005100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.4e-09 67.4 145 30.3
COL.COLO4_27741 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.8e-09 67.0 71 49.3
Thecc.04G262700 Theobroma cacao HOM05D000003 ORTHO05D002259 1.8e-09 67.0 149 28.9
Thecc.05G092100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.8e-09 67.0 172 26.7
Thecc.10G061600 Theobroma cacao HOM05D000003 ORTHO05D002259 1.8e-09 67.0 124 34.7
TAR131G0003 Trochodendron aralioides HOM05D000003 ORTHO05D011990 3.1e-09 66.2 120 33.3
Atru.chr12.2307 Acer truncatum HOM05D000003 ORTHO05D002259 4.1e-09 65.9 166 30.7
Atru.chr4.1523 Acer truncatum HOM05D000003 ORTHO05D002259 4.1e-09 65.9 176 26.1
Atru.chr9.316 Acer truncatum HOM05D000003 ORTHO05D002259 5.4e-09 65.5 174 27.6
Gohir.A06G181801 Gossypium hirsutum HOM05D014430 ORTHO05D002259 5.4e-09 65.5 126 31.7
Atru.chr2.2918 Acer truncatum HOM05D000003 ORTHO05D000004 7.0e-09 65.1 177 29.4
Atru.chr8.877 Acer truncatum HOM05D000003 ORTHO05D002259 1.2e-08 64.3 150 28.7
Atru.chr6.713 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-08 63.5 176 27.8
Atru.chr11.1160 Acer truncatum HOM05D000003 ORTHO05D002259 3.5e-08 62.8 175 29.1
Atru.chr13.2301 Acer truncatum HOM05D000003 ORTHO05D002259 3.5e-08 62.8 176 28.4
Gohir.A09G072500 Gossypium hirsutum HOM05D008457 ORTHO05D011002 3.5e-08 62.8 182 27.5
Atru.chr1.2408 Acer truncatum HOM05D000003 ORTHO05D000004 4.5e-08 62.4 177 28.2
Thecc.06G027000 Theobroma cacao HOM05D000003 ORTHO05D002259 4.5e-08 62.4 93 35.5
Atru.chr13.1770 Acer truncatum HOM05D000003 ORTHO05D002259 7.7e-08 61.6 165 28.5
Gorai.010G220900 Gossypium raimondii HOM05D014430 ORTHO05D002259 7.7e-08 61.6 146 27.4
TWI36G1756 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 7.7e-08 61.6 143 30.1
Atru.chr12.2402 Acer truncatum HOM05D000003 ORTHO05D002259 1.0e-07 61.2 148 28.4
Atru.chr7.607 Acer truncatum HOM05D000003 ORTHO05D002259 1.3e-07 60.8 144 29.9
Gorai.006G060800 Gossypium raimondii HOM05D029474 ORTHO05D036048 1.3e-07 60.8 102 30.4
Atru.chr7.381 Acer truncatum HOM05D000003 ORTHO05D002259 1.7e-07 60.5 176 26.1
Gohir.D06G188501 Gossypium hirsutum HOM05D014430 ORTHO05D002259 1.7e-07 60.5 146 26.7
Thecc.04G117300 Theobroma cacao HOM05D000003 ORTHO05D002259 1.7e-07 60.5 98 31.6
Gohir.D09G049133 Gossypium hirsutum HOM05D029474 ORTHO05D036048 2.9e-07 59.7 111 29.7
TWI74G1163 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 2.9e-07 59.7 128 25.8
COL.COLO4_20696 Corchorus olitorius HOM05D000003 ORTHO05D002259 3.8e-07 59.3 67 46.3
Gohir.D10G240100 Gossypium hirsutum HOM05D008457 ORTHO05D011002 3.8e-07 59.3 148 29.1
TWI39G0070 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 3.8e-07 59.3 141 27.0
COL.COLO4_22651 Corchorus olitorius HOM05D000003 ORTHO05D002259 5.0e-07 58.9 62 45.2
Hma1.2p1_0402F.1_g145030 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 5.0e-07 58.9 110 33.6
Thecc.03G002300 Theobroma cacao HOM05D000003 ORTHO05D002259 5.0e-07 58.9 82 41.5
Atru.chr1.787 Acer truncatum HOM05D002354 ORTHO05D002259 6.6e-07 58.5 178 25.8
Thecc.04G103900 Theobroma cacao HOM05D000003 ORTHO05D002259 6.6e-07 58.5 63 49.2
Hma1.2p1_3886F.1_g337920 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.1e-06 57.8 138 31.2
Thecc.02G058700 Theobroma cacao HOM05D000003 ORTHO05D002259 1.1e-06 57.8 125 29.6
TAR648G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000004 1.1e-06 57.8 130 30.8
Atru.chr2.3564 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-06 57.4 166 28.3
Atru.chr7.96 Acer truncatum HOM05D000003 ORTHO05D002259 1.5e-06 57.4 175 26.3
PSO170G5060 Papaver somniferum HOM05D007979 ORTHO05D008897 1.5e-06 57.4 113 29.2
Atru.chr6.295 Acer truncatum HOM05D000003 ORTHO05D002259 1.9e-06 57.0 178 25.8
Atru.chr6.296 Acer truncatum HOM05D000003 ORTHO05D002259 1.9e-06 57.0 166 27.7
Atru.chr11.133 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-06 56.6 150 28.0
EL10Ac1g02112 Beta vulgaris HOM05D000003 ORTHO05D000006 2.5e-06 56.6 130 29.2
Hma1.2p1_1241F.1_g269710 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.5e-06 56.6 70 41.4
Atru.chr3.3329 Acer truncatum HOM05D000003 ORTHO05D002259 4.3e-06 55.8 178 25.3
Atru.chr8.1166 Acer truncatum HOM05D003047 ORTHO05D000627 4.3e-06 55.8 140 29.3
COL.COLO4_06100 Corchorus olitorius HOM05D000003 ORTHO05D002259 4.3e-06 55.8 75 41.3
Hma1.2p1_3154F.1_g333360 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 4.3e-06 55.8 107 32.7
SHI53806 Sapria himalayana HOM05D004990 ORTHO05D000022 4.3e-06 55.8 112 32.1
Atru.chr1.1751 Acer truncatum HOM05D000003 ORTHO05D002259 5.6e-06 55.5 66 45.5
SEGI_06263 Sequoiadendron giganteum HOM05D000620 ORTHO05D000537 5.6e-06 55.5 182 23.6
TWI14G0536 Tripterygium wilfordii HOM05D008457 ORTHO05D002259 5.6e-06 55.5 166 25.9
Atru.chr9.1620 Acer truncatum HOM05D000003 ORTHO05D002259 7.3e-06 55.1 91 38.5
Gohir.A05G352433 Gossypium hirsutum HOM05D008457 ORTHO05D011002 7.3e-06 55.1 117 32.5
Hma1.2p1_1754F.1_g300945 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 7.3e-06 55.1 118 29.7
Medtr1g066780 Medicago truncatula HOM05D059875 ORTHO05D002259 7.3e-06 55.1 111 31.5
Thecc.01G176600 Theobroma cacao HOM05D000003 ORTHO05D002259 7.3e-06 55.1 93 35.5
Thecc.06G100900 Theobroma cacao HOM05D000003 ORTHO05D002259 7.3e-06 55.1 71 33.8
Thecc.09G083400 Theobroma cacao HOM05D014430 ORTHO05D002259 7.3e-06 55.1 175 25.1
Atru.chr13.1833 Acer truncatum HOM05D000003 ORTHO05D002259 9.5e-06 54.7 142 26.1
COL.COLO4_15333 Corchorus olitorius HOM05D064659 ORTHO05D000022 9.5e-06 54.7 121 28.1
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 9.5e-06 54.7 178 24.7


User provided reference genes

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