Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 5.8e-136 487.6 264 100.0
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 9.7e-107 390.6 268 84.3
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 9.1e-105 384.0 260 84.6
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.5e-102 376.7 259 83.0
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 6.1e-101 371.3 260 82.7
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 3.0e-100 369.0 260 82.3
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.1e-97 360.5 259 79.5
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 1.3e-90 337.0 260 73.8
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.2e-80 303.9 239 73.2
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 3.3e-78 295.8 229 73.4
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 4.3e-78 295.4 266 68.8
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 1.2e-77 293.9 261 66.7
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 1.6e-77 293.5 261 68.2
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.0e-76 290.8 263 67.3
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 2.3e-76 289.7 237 69.6
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 4.0e-76 288.9 261 66.7
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 3.4e-75 285.8 262 67.2
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 4.4e-75 285.4 266 67.3
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 7.5e-75 284.6 254 66.9
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 9.8e-75 284.3 261 67.0
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 3.7e-74 282.3 228 72.4
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 4.1e-73 278.9 257 65.0
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 1.6e-72 276.9 218 70.2
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 4.6e-72 275.4 246 67.9
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 7.8e-72 274.6 253 64.0
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 7.8e-72 274.6 250 65.2
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 1.1e-70 270.8 263 63.5
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 2.5e-70 269.6 261 63.2
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 5.6e-70 268.5 265 61.5
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 7.3e-70 268.1 228 67.5
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 9.5e-70 267.7 221 67.0
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 2.1e-69 266.5 237 66.2
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 2.8e-69 266.2 259 62.2
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 6.2e-69 265.0 262 63.7
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 8.0e-69 264.6 225 68.9
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.4e-68 263.8 266 63.2
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 3.1e-68 262.7 262 63.7
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 3.1e-68 262.7 263 59.7
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 4.0e-68 262.3 259 62.2
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 6.8e-68 261.5 259 63.3
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 6.8e-68 261.5 259 63.3
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 8.9e-68 261.2 240 66.7
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.2e-67 260.8 265 63.4
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 1.5e-67 260.4 260 62.7
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 2.6e-67 259.6 254 62.6
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 3.4e-67 259.2 261 60.5
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 3.4e-67 259.2 250 61.2
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 9.8e-67 257.7 251 62.9
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 1.3e-66 257.3 260 61.9
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 3.7e-66 255.8 259 59.5
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 8.3e-66 254.6 205 72.7
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 1.1e-65 254.2 250 61.2
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 3.2e-65 252.7 231 62.8
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 4.1e-65 252.3 230 63.5
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 9.2e-65 251.1 226 64.6
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 1.2e-64 250.8 259 61.8
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 6.0e-64 248.4 263 57.0
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 2.5e-62 243.0 264 57.2
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 3.3e-62 242.7 289 54.7
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 1.1e-60 237.7 267 58.1
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 1.4e-60 237.3 226 64.2
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 5.2e-60 235.3 266 56.8
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 6.8e-60 235.0 259 60.2
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 1.5e-59 233.8 259 58.7
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 4.4e-59 232.3 197 64.5
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 4.4e-59 232.3 255 57.3
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 9.8e-59 231.1 240 61.2
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 1.7e-58 230.3 267 56.9
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 2.9e-58 229.6 260 56.2
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 4.9e-58 228.8 211 66.8
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 1.4e-57 227.3 264 54.2
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 2.4e-57 226.5 226 60.6
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 2.4e-57 226.5 226 60.6
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 2.4e-57 226.5 226 60.6
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 3.2e-57 226.1 278 56.8
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 4.1e-57 225.7 261 57.1
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 1.6e-56 223.8 241 58.9
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 1.6e-56 223.8 241 58.9
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 3.5e-56 222.6 253 56.9
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 3.5e-56 222.6 287 51.9
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 3.5e-56 222.6 264 54.9
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 1.3e-55 220.7 264 54.2
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 3.0e-55 219.5 264 53.8
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 6.6e-55 218.4 257 55.6
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 4.3e-54 215.7 254 54.7
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 9.5e-54 214.5 271 53.9
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 1.6e-53 213.8 224 55.4
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 2.1e-53 213.4 265 53.2
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 2.1e-53 213.4 246 56.9
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 8.1e-53 211.5 226 58.0
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 3.1e-52 209.5 229 55.0
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 5.2e-52 208.8 237 55.7
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 6.8e-52 208.4 252 52.4
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 2.0e-51 206.8 249 55.4
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 4.4e-51 205.7 264 52.3
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 5.8e-51 205.3 251 53.8
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 9.9e-51 204.5 248 53.2
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 1.3e-50 204.1 248 53.2
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.2e-50 203.4 179 62.0
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 3.7e-50 202.6 254 52.8
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 1.9e-49 200.3 246 52.4
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 3.2e-49 199.5 211 57.8
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.2e-48 197.6 203 55.7
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 3.5e-48 196.1 162 72.2
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.3e-47 194.1 259 49.0
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 1.3e-47 194.1 224 54.0
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 1.7e-47 193.7 173 64.2
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 3.9e-47 192.6 146 71.2
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.1e-46 191.0 225 53.8
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.1e-46 191.0 225 52.0
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 2.5e-46 189.9 120 83.3
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 3.3e-46 189.5 226 53.5
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 4.3e-46 189.1 238 52.9
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 3.6e-45 186.0 237 49.4
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 8.1e-45 184.9 187 59.9
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 1.4e-44 184.1 243 49.8
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 6.8e-44 181.8 151 67.5
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.6e-43 179.9 177 58.8
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 3.4e-43 179.5 196 56.6
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 1.3e-42 177.6 229 52.4
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 4.2e-41 172.6 242 50.8
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 8.7e-39 164.9 206 50.5
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 3.3e-38 162.9 227 48.0
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 1.3e-37 161.0 192 54.7
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.4e-36 156.8 236 50.0
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 3.1e-36 156.4 177 54.8
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 6.9e-36 155.2 152 57.9
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 5.8e-35 152.1 134 67.9
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 2.2e-34 150.2 136 64.0
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 2.4e-33 146.7 139 65.5
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 1.6e-32 144.1 258 41.1
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 1.1e-25 121.3 108 63.9
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 1.2e-24 117.9 107 59.8
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 3.1e-20 103.2 113 56.6
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 1.3e-18 97.8 227 33.0
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 2.9e-18 96.7 66 77.3
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 1.1e-17 94.7 115 53.9
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 1.4e-17 94.4 215 33.0
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 1.2e-16 91.3 201 34.8
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 6.0e-16 89.0 105 54.3
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 6.0e-16 89.0 170 38.2
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 2.8e-13 80.1 84 58.3
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 1.5e-11 74.3 203 29.6
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 4.5e-11 72.8 65 63.1
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 2.9e-10 70.1 62 64.5
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 6.5e-10 68.9 270 28.9
arahy.Tifrunner.gnm1.ann1.C0TKG5 Arachis hypogaea HOM05D002282 ORTHO05D002403 2.7e-08 63.5 245 29.4
MCO14G074 Micromonas commoda HOM05D002282 ORTHO05D002403 1.3e-07 61.2 241 27.8
arahy.Tifrunner.gnm1.ann1.3PI56D Arachis hypogaea HOM05D002282 ORTHO05D002403 1.8e-07 60.8 242 29.3
Haze_04567 Corylus avellana HOM05D002282 ORTHO05D002403 4.3e-06 56.2 134 33.6
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 7.4e-06 55.5 204 30.4
Lj3A826G75 Lonicera japonica HOM05D002282 ORTHO05D002403 9.7e-06 55.1 88 37.5
Prupe.1G129200 Prunus persica HOM05D002282 ORTHO05D002403 9.7e-06 55.1 142 31.7


User provided reference genes

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