Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G072900 Theobroma cacao HOM05D002091 ORTHO05D002140 9.8e-17 89.0 43 100.0
MD10G1289900 Malus domestica HOM05D002091 ORTHO05D002140 7.8e-14 79.3 43 88.4
Prupe.4G051800 Prunus persica HOM05D002091 ORTHO05D002140 7.8e-14 79.3 43 88.4
Manes.17G048800 Manihot esculenta HOM05D002091 ORTHO05D002140 1.0e-13 79.0 43 90.7
Gohir.A10G027700 Gossypium hirsutum HOM05D002091 ORTHO05D002140 3.0e-13 77.4 43 88.4
Manes.16G031200 Manihot esculenta HOM05D002091 ORTHO05D002140 3.0e-13 77.4 43 86.0
Ciclev10017075m.g Citrus clementina HOM05D002091 ORTHO05D002140 6.6e-13 76.3 43 86.0
Eucgr.D00599 Eucalyptus grandis HOM05D002091 ORTHO05D002140 6.6e-13 76.3 43 83.7
ClCG01G023210 Citrullus lanatus HOM05D002091 ORTHO05D002140 1.5e-12 75.1 43 83.7
Ca_00357_v3 Cicer arietinum L. HOM05D002091 ORTHO05D002140 2.5e-12 74.3 43 86.0
FvH4_5g21460 Fragaria vesca HOM05D002091 ORTHO05D002140 4.3e-12 73.6 41 82.9
Potri.011G057300 Populus trichocarpa HOM05D002091 ORTHO05D002140 5.6e-12 73.2 43 86.0
arahy.Tifrunner.gnm1.ann1.252E8Q Arachis hypogaea HOM05D002091 ORTHO05D002140 1.6e-11 71.6 41 82.9
arahy.Tifrunner.gnm1.ann1.G0WLQA Arachis hypogaea HOM05D002091 ORTHO05D002140 1.6e-11 71.6 41 82.9
Lj6g0006336 Lotus japonicus HOM05D002091 ORTHO05D002140 2.1e-11 71.2 43 83.7
Glyma.13G236300 Glycine max HOM05D002091 ORTHO05D002140 8.1e-11 69.3 42 81.0
Glyma.15G077400 Glycine max HOM05D002091 ORTHO05D002140 8.1e-11 69.3 42 81.0
Thecc.06G181700 Theobroma cacao HOM05D002091 ORTHO05D002140 8.1e-11 69.3 36 94.4
Solyc02g077730.3 Solanum lycopersicum HOM05D002091 ORTHO05D002140 1.8e-10 68.2 43 79.1
PGSC0003DMG400031762 Solanum tuberosum HOM05D002091 ORTHO05D002140 1.8e-10 68.2 43 79.1
Thecc.02G185200 Theobroma cacao HOM05D002091 ORTHO05D002140 1.8e-10 68.2 42 78.6
CiPaw.10G052200 Carya illinoinensis HOM05D002091 ORTHO05D002140 2.3e-10 67.8 43 83.7
Duzib192G0619 Durio zibethinus HOM05D002091 ORTHO05D002140 3.1e-10 67.4 36 88.9
FvH4_3g08700 Fragaria vesca HOM05D002091 ORTHO05D002140 3.1e-10 67.4 37 86.5
FAN11G3551 Fragaria x ananassa HOM05D002091 ORTHO05D002140 3.1e-10 67.4 37 86.5
FAN16G1464 Fragaria x ananassa HOM05D002091 ORTHO05D002140 3.1e-10 67.4 37 86.5
FAN21G3816 Fragaria x ananassa HOM05D002091 ORTHO05D002140 3.1e-10 67.4 37 86.5
Sabra11G0039200 Salix brachista HOM05D002091 ORTHO05D002140 3.1e-10 67.4 37 89.2
Eucgr.K01049 Eucalyptus grandis HOM05D002091 ORTHO05D002140 4.0e-10 67.0 43 72.1
BolC3t19767H Brassica oleracea HOM05D002091 ORTHO05D002140 6.8e-10 66.2 43 79.1
BraA08t34511Z Brassica rapa HOM05D002091 ORTHO05D002140 6.8e-10 66.2 43 79.1
Carub.0001s2687 Capsella rubella HOM05D002091 ORTHO05D002140 6.8e-10 66.2 43 79.1
FAN18G2905 Fragaria x ananassa HOM05D002091 ORTHO05D002140 1.2e-09 65.5 36 86.1
arahy.Tifrunner.gnm1.ann1.528IQ7 Arachis hypogaea HOM05D002091 ORTHO05D002140 1.5e-09 65.1 43 74.4
Gohir.D10G028100 Gossypium hirsutum HOM05D002091 ORTHO05D002140 1.5e-09 65.1 37 86.5
RcHm_v2.0_Chr5g0009081 Rosa chinensis HOM05D002091 ORTHO05D002140 1.5e-09 65.1 36 86.1
CsaV3_6G050360 Cucumis sativus L. HOM05D002091 ORTHO05D002140 2.0e-09 64.7 43 72.1
TWI23G0384 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 2.0e-09 64.7 43 72.1
Potri.004G048100 Populus trichocarpa HOM05D002091 ORTHO05D002140 2.6e-09 64.3 36 86.1
Lalb_Chr22g0356711 Lupinus albus HOM05D002091 ORTHO05D002140 3.4e-09 63.9 42 76.2
MELO3C032902.2 Cucumis melo HOM05D002091 ORTHO05D002140 4.4e-09 63.5 36 83.3
Duzib052G0085 Durio zibethinus HOM05D002091 ORTHO05D002140 4.4e-09 63.5 42 73.8
Gorai.011G029900 Gossypium raimondii HOM05D002091 ORTHO05D002140 4.4e-09 63.5 39 82.1
RcHm_v2.0_Chr7g0223571 Rosa chinensis HOM05D002091 ORTHO05D002140 4.4e-09 63.5 41 70.7
Lalb_Chr16g0383981 Lupinus albus HOM05D002091 ORTHO05D002140 7.6e-09 62.8 43 74.4
QL05p042066 Quercus lobata HOM05D002091 ORTHO05D002140 7.6e-09 62.8 36 83.3
CSS0017392 Camellia sinensis var. sinensis HOM05D002091 ORTHO05D002140 9.9e-09 62.4 40 72.5
Dinv06863 Davidia involucrata HOM05D002091 ORTHO05D002140 1.3e-08 62.0 43 67.4
FvH4_3g02420 Fragaria vesca HOM05D002091 ORTHO05D002140 1.3e-08 62.0 40 72.5
FAN16G2242 Fragaria x ananassa HOM05D002091 ORTHO05D002140 1.3e-08 62.0 41 68.3
TAR624G0411 Trochodendron aralioides HOM05D002091 ORTHO05D002140 1.3e-08 62.0 36 83.3
TAR624G0503 Trochodendron aralioides HOM05D002091 ORTHO05D002140 1.3e-08 62.0 36 83.3
MD05G1310800 Malus domestica HOM05D002091 ORTHO05D002140 1.7e-08 61.6 36 83.3
TWI59G1014 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 1.7e-08 61.6 38 73.7
Cpa.g.sc27.10 Carica papaya HOM05D002091 ORTHO05D002140 2.9e-08 60.8 36 83.3
FAN08G0686 Fragaria x ananassa HOM05D002091 ORTHO05D002140 2.9e-08 60.8 36 80.6
CiPaw.09G063100 Carya illinoinensis HOM05D002091 ORTHO05D002140 3.7e-08 60.5 37 81.1
Dinv10163 Davidia involucrata HOM05D002091 ORTHO05D002140 3.7e-08 60.5 43 69.8
Cfa000522 Carpinus fangiana HOM05D002091 ORTHO05D002140 4.9e-08 60.1 36 86.1
Haze_06388 Corylus avellana HOM05D002091 ORTHO05D002140 4.9e-08 60.1 36 86.1
Sopen10g004910 Solanum pennellii HOM05D002091 ORTHO05D002140 6.4e-08 59.7 44 72.7
Aa31LG6G10340 Aethionema arabicum HOM05D002091 ORTHO05D002140 8.4e-08 59.3 40 75.0
AL4G29640 Arabidopsis lyrata HOM05D002091 ORTHO05D002140 8.4e-08 59.3 43 74.4
AT2G33847 Arabidopsis thaliana HOM05D002091 ORTHO05D002140 1.1e-07 58.9 43 74.4
FAN21G3975 Fragaria x ananassa HOM05D000422 ORTHO05D011804 1.1e-07 58.9 34 82.4
Nitab4.5_0000516g0100 Nicotiana tabacum HOM05D002091 ORTHO05D002140 1.1e-07 58.9 39 74.4
Phvul.005G101000 Phaseolus vulgaris HOM05D002091 ORTHO05D002140 1.1e-07 58.9 37 78.4
Hund23804 Selenicereus undatus HOM05D002091 ORTHO05D002140 1.1e-07 58.9 36 75.0
Solyc10g009130.4 Solanum lycopersicum HOM05D002091 ORTHO05D002140 1.1e-07 58.9 39 74.4
PGSC0003DMG400022808 Solanum tuberosum HOM05D002091 ORTHO05D002140 1.1e-07 58.9 39 74.4
Sc17g0005970 Simmondsia chinensis HOM05D002091 ORTHO05D002140 1.4e-07 58.5 36 75.0
Atru.chr10.1805 Acer truncatum HOM05D002091 ORTHO05D002140 1.9e-07 58.2 36 80.6
AUR62014863 Chenopodium quinoa HOM05D002091 ORTHO05D002140 1.9e-07 58.2 36 72.2
AUR62031069 Chenopodium quinoa HOM05D002091 ORTHO05D002140 1.9e-07 58.2 36 72.2
Medtr2g014370 Medicago truncatula HOM05D002091 ORTHO05D002140 1.9e-07 58.2 37 81.1
Glyma.13G294600 Glycine max HOM05D002091 ORTHO05D002140 2.4e-07 57.8 37 75.7
Gohir.A03G154900 Gossypium hirsutum HOM05D002091 ORTHO05D002140 2.4e-07 57.8 42 66.7
HanXRQChr17g0554581 Helianthus annuus HOM05D002091 ORTHO05D002140 2.4e-07 57.8 43 62.8
Sed0006600 Sechium edule HOM05D002091 ORTHO05D002140 2.4e-07 57.8 43 58.1
PGSC0003DMG400012829 Solanum tuberosum HOM05D002091 ORTHO05D002140 2.4e-07 57.8 39 71.8
TAR626G1951 Trochodendron aralioides HOM05D002091 ORTHO05D002140 2.4e-07 57.8 36 72.2
Nn4g24122 Nelumbo nucifera HOM05D002091 ORTHO05D002140 4.1e-07 57.0 44 70.5
Nitab4.5_0007893g0040 Nicotiana tabacum HOM05D002091 ORTHO05D002140 4.1e-07 57.0 37 78.4
Sopen02g022620 Solanum pennellii HOM05D002091 ORTHO05D002140 4.1e-07 57.0 37 78.4
Gorai.005G199700 Gossypium raimondii HOM05D002091 ORTHO05D002140 5.4e-07 56.6 42 66.7
Phvul.006G182900 Phaseolus vulgaris HOM05D002091 ORTHO05D002140 5.4e-07 56.6 36 77.8
TWI59G0581 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 5.4e-07 56.6 37 73.0
CANSAT64G3013 Cannabis sativa HOM05D002091 ORTHO05D002140 7.1e-07 56.2 37 73.0
COL.COLO4_18048 Corchorus olitorius HOM05D002091 ORTHO05D002140 7.1e-07 56.2 36 72.2
Gohir.D02G177900 Gossypium hirsutum HOM05D002091 ORTHO05D002140 7.1e-07 56.2 42 64.3
GSVIVG01021106001 Vitis vinifera HOM05D002091 ORTHO05D002140 7.1e-07 56.2 36 77.8
EL10Ac8g20431 Beta vulgaris HOM05D002091 ORTHO05D002140 9.2e-07 55.8 36 72.2
BolC8t51774H Brassica oleracea HOM05D002091 ORTHO05D002140 9.2e-07 55.8 43 65.1
BraA09t41268Z Brassica rapa HOM05D002091 ORTHO05D002140 9.2e-07 55.8 43 65.1
Cpa.g.sc83.86 Carica papaya HOM05D002091 ORTHO05D002140 9.2e-07 55.8 36 72.2
ECA234G0158 Erigeron canadensis HOM05D002091 ORTHO05D000004 9.2e-07 55.8 39 71.8
HanXRQChr01g0027921 Helianthus annuus HOM05D002091 ORTHO05D002140 9.2e-07 55.8 43 58.1
Manes.13G142700 Manihot esculenta HOM05D002091 ORTHO05D002140 9.2e-07 55.8 37 75.7
Prupe.3G134600 Prunus persica HOM05D002091 ORTHO05D002140 9.2e-07 55.8 36 72.2
RcHm_v2.0_Chr2g0127311 Rosa chinensis HOM05D002091 ORTHO05D002140 9.2e-07 55.8 36 72.2
Sed0010495 Sechium edule HOM05D002091 ORTHO05D002140 9.2e-07 55.8 36 75.0
Carub.0004s1554 Capsella rubella HOM05D002091 ORTHO05D002140 1.2e-06 55.5 43 69.8
Thhalv10002135m.g Eutrema salsugineum HOM05D002091 ORTHO05D002140 1.2e-06 55.5 41 63.4
Nn1g09648 Nelumbo nucifera HOM05D002091 ORTHO05D002140 1.2e-06 55.5 36 77.8
Sp3g33830 Schrenkiella parvula HOM05D002091 ORTHO05D002140 1.2e-06 55.5 41 63.4
ECA238G3683 Erigeron canadensis HOM05D002091 ORTHO05D002140 1.6e-06 55.1 43 55.8
THA.LOC104814228 Tarenaya hassleriana HOM05D002091 ORTHO05D002140 1.6e-06 55.1 37 78.4
VMungo1080G1707 Vigna mungo HOM05D002091 ORTHO05D002140 1.6e-06 55.1 36 75.0
Atru.chr6.2877 Acer truncatum HOM05D002091 ORTHO05D002140 2.1e-06 54.7 36 75.0
Aa31LG9G13740 Aethionema arabicum HOM05D002091 ORTHO05D002140 2.1e-06 54.7 40 70.0
AL3G53640 Arabidopsis lyrata HOM05D002091 ORTHO05D002140 2.1e-06 54.7 41 61.0
Nn3g18204 Nelumbo nucifera HOM05D002091 ORTHO05D002140 2.1e-06 54.7 37 75.7
TWI56G0819 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 2.1e-06 54.7 37 70.3
AT1G28395 Arabidopsis thaliana HOM05D002091 ORTHO05D002140 2.7e-06 54.3 37 75.7
Haze_13234 Corylus avellana HOM05D002091 ORTHO05D002140 2.7e-06 54.3 39 69.2
arahy.Tifrunner.gnm1.ann1.2NH087 Arachis hypogaea HOM05D002091 ORTHO05D002140 3.5e-06 53.9 37 73.0
CARHR027900 Cardamine hirsuta HOM05D002091 ORTHO05D002140 3.5e-06 53.9 37 75.7
ECA248G0199 Erigeron canadensis HOM05D002091 ORTHO05D002140 3.5e-06 53.9 43 55.8
Thhalv10009195m.g Eutrema salsugineum HOM05D002091 ORTHO05D002140 3.5e-06 53.9 37 75.7
Glyma.12G206300 Glycine max HOM05D002091 ORTHO05D002140 3.5e-06 53.9 36 72.2
RcHm_v2.0_Chr7g0223421 Rosa chinensis HOM05D002091 ORTHO05D002140 3.5e-06 53.9 36 69.4
Sc05g0007470 Simmondsia chinensis HOM05D002091 ORTHO05D002140 3.5e-06 53.9 36 72.2
Aqoxy1G02309 Aquilegia oxysepala HOM05D002091 ORTHO05D002140 4.6e-06 53.5 36 66.7
Haze_13233 Corylus avellana HOM05D002091 ORTHO05D002140 4.6e-06 53.5 36 72.2
MELO3C021989.2 Cucumis melo HOM05D002091 ORTHO05D002140 4.6e-06 53.5 43 65.1
GSVIVG01020598001 Vitis vinifera HOM05D002091 ORTHO05D002140 4.6e-06 53.5 33 72.7
Aa31LG8G17490 Aethionema arabicum HOM05D002091 ORTHO05D002140 6.0e-06 53.1 43 60.5
MSTRG.14328 Avicennia marina HOM05D002091 ORTHO05D002140 6.0e-06 53.1 43 60.5
Peaxi162Scf00926g00514 Petunia axillaris HOM05D002091 ORTHO05D002140 6.0e-06 53.1 37 73.0
VMungo0540G0400 Vigna mungo HOM05D002091 ORTHO05D002140 6.0e-06 53.1 35 74.3
Carub.0003s3507 Capsella rubella HOM05D002091 ORTHO05D002140 7.8e-06 52.8 41 61.0
Nitab4.5_0005260g0020 Nicotiana tabacum HOM05D002091 ORTHO05D002140 7.8e-06 52.8 39 66.7
PSO541G0554 Papaver somniferum HOM05D002091 ORTHO05D002140 7.8e-06 52.8 37 73.0


User provided reference genes

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