Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 1.6e-172 609.4 309 100.0
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 3.6e-137 491.9 310 82.6
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 1.4e-136 490.0 312 82.4
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 2.2e-134 482.6 312 82.1
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 1.4e-120 436.8 306 76.1
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 4.4e-119 431.8 314 74.2
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 1.4e-117 426.8 310 73.5
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 3.2e-117 425.6 315 72.1
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 4.2e-117 425.2 301 76.4
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 1.7e-115 419.9 309 71.8
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 3.9e-115 418.7 293 75.8
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 3.9e-115 418.7 271 77.5
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 3.9e-115 418.7 313 70.0
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 5.1e-115 418.3 293 74.7
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 5.1e-115 418.3 270 80.0
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 1.5e-114 416.8 312 70.5
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 1.9e-114 416.4 295 75.3
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 4.3e-114 415.2 273 78.4
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 5.6e-114 414.8 252 83.3
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 5.6e-114 414.8 305 72.1
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 8.1e-113 411.0 296 73.3
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 1.2e-111 407.1 257 80.9
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 1.2e-111 407.1 296 72.3
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 1.2e-111 407.1 296 72.3
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 2.0e-111 406.4 315 70.5
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 2.6e-111 406.0 298 72.8
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 2.6e-111 406.0 241 84.6
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 4.5e-111 405.2 309 70.9
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 1.3e-110 403.7 238 84.5
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 2.2e-110 402.9 315 70.2
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 2.2e-110 402.9 241 85.9
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 2.9e-110 402.5 255 80.8
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 3.8e-110 402.1 246 81.3
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 3.8e-110 402.1 291 73.5
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 3.8e-110 402.1 298 72.5
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 4.9e-110 401.7 300 71.3
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 6.4e-110 401.4 243 83.5
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 6.4e-110 401.4 295 71.9
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 3.2e-109 399.1 243 83.5
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 4.2e-109 398.7 261 78.2
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 1.6e-108 396.7 304 68.4
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 2.1e-108 396.4 309 70.2
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 2.1e-108 396.4 288 71.5
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 2.1e-108 396.4 277 73.6
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 3.5e-108 395.6 308 69.8
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 4.6e-108 395.2 213 93.9
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 4.6e-108 395.2 259 78.0
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 6.0e-108 394.8 266 77.1
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 2.3e-107 392.9 252 78.6
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 3.9e-107 392.1 252 79.0
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 5.1e-107 391.7 293 70.6
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 5.1e-107 391.7 252 78.6
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 5.1e-107 391.7 290 71.4
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 5.1e-107 391.7 231 84.8
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 6.7e-107 391.3 252 77.8
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 8.7e-107 391.0 252 78.2
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 1.5e-106 390.2 252 79.4
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 4.3e-106 388.7 230 84.3
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 4.3e-106 388.7 259 78.4
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 5.6e-106 388.3 256 78.1
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 9.6e-106 387.5 264 74.2
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 1.6e-105 386.7 252 77.8
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 2.8e-105 386.0 310 69.0
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 4.8e-105 385.2 250 78.0
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 6.2e-105 384.8 285 70.2
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 1.1e-104 384.0 223 85.7
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 1.1e-104 384.0 257 75.9
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 2.0e-103 379.8 252 76.6
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 2.0e-103 379.8 261 76.2
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 2.0e-103 379.8 231 81.0
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 2.6e-103 379.4 244 79.5
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 2.6e-103 379.4 247 78.1
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 5.8e-103 378.3 252 77.0
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 7.6e-103 377.9 246 78.0
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 1.0e-102 377.5 246 78.0
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 4.9e-102 375.2 256 75.0
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 6.5e-102 374.8 294 69.7
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 1.9e-101 373.2 209 88.5
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 2.5e-101 372.9 283 70.7
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 5.5e-101 371.7 258 72.9
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 9.3e-101 370.9 382 56.0
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 9.3e-101 370.9 253 73.5
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 1.8e-99 366.7 261 74.3
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 5.7e-98 361.7 283 67.8
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 7.4e-98 361.3 398 54.0
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 4.8e-97 358.6 214 84.1
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 6.2e-97 358.2 227 77.1
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 8.2e-97 357.8 252 71.8
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 4.1e-96 355.5 215 82.8
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 1.1e-93 347.4 215 81.9
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 1.2e-92 344.0 300 62.7
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 1.6e-92 343.6 255 70.2
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 1.9e-90 336.7 297 63.0
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 4.3e-90 335.5 232 74.1
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 2.8e-89 332.8 269 68.8
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 2.4e-88 329.7 260 65.8
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 9.0e-88 327.8 237 70.0
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 1.5e-87 327.0 310 63.2
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 1.7e-86 323.6 193 83.9
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 1.7e-86 323.6 277 67.5
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 2.9e-86 322.8 225 71.1
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 8.5e-86 321.2 213 77.0
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 7.2e-85 318.2 254 67.7
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 2.7e-84 316.2 306 58.8
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 9.4e-77 291.2 308 55.2
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 2.8e-73 279.6 259 59.8
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 9.1e-72 274.6 208 72.1
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 1.6e-71 273.9 256 56.6
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 4.5e-71 272.3 221 66.1
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 6.5e-70 268.5 172 75.0
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 9.4e-69 264.6 229 65.1
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 1.9e-53 213.8 172 66.9
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 5.5e-53 212.2 177 57.1
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 2.7e-47 193.4 162 66.0
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.9e-45 187.2 168 63.7
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 1.8e-40 170.6 104 79.8
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 1.0e-38 164.9 181 51.9
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 1.0e-38 164.9 188 52.7
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 3.5e-31 139.8 244 43.0
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 1.7e-30 137.5 268 41.0
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 1.9e-24 117.5 147 53.1
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 1.9e-24 117.5 148 50.7
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 1.2e-23 114.8 144 50.0
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 5.6e-21 105.9 72 69.4
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 1.5e-18 97.8 99 53.5
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 7.6e-18 95.5 62 71.0
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 3.8e-17 93.2 219 30.6
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 3.8e-17 93.2 238 30.7
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 1.3e-14 84.7 55 70.9
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 1.3e-14 84.7 57 75.4
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 3.0e-14 83.6 105 55.2
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 7.1e-08 62.4 63 61.9


User provided reference genes

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