Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 1.9e-87 325.9 168 100.0
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.3e-80 303.1 167 92.2
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.4e-79 299.7 167 91.0
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 1.4e-79 299.7 167 91.0
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 1.9e-76 289.3 161 90.7
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 3.5e-70 268.5 162 84.6
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 6.3e-67 257.7 163 79.1
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 1.5e-65 253.1 161 78.9
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 2.0e-65 252.7 164 78.7
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 5.0e-64 248.1 164 77.4
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 6.5e-64 247.7 164 77.4
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 6.5e-64 247.7 164 77.4
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 6.5e-64 247.7 161 77.6
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 8.4e-64 247.3 168 76.8
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 3.2e-63 245.4 163 76.7
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 3.2e-63 245.4 162 78.4
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 1.2e-62 243.4 165 73.9
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 1.6e-62 243.0 165 73.9
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 2.1e-62 242.7 161 77.0
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 2.1e-62 242.7 162 75.9
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 2.1e-62 242.7 160 76.9
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 7.9e-62 240.7 162 77.8
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 3.0e-61 238.8 158 75.3
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 3.9e-61 238.4 165 74.5
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 5.1e-61 238.0 165 77.0
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 8.7e-61 237.3 165 73.9
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.9e-60 236.1 160 74.4
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 2.5e-60 235.7 164 73.2
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 4.3e-60 235.0 165 72.1
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 5.7e-60 234.6 160 73.1
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 5.7e-60 234.6 165 72.7
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.6e-59 233.0 160 73.8
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 1.6e-59 233.0 152 78.3
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 1.6e-59 233.0 165 72.1
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.8e-59 232.3 160 73.8
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 2.8e-59 232.3 165 69.7
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 4.8e-59 231.5 165 69.7
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 6.3e-59 231.1 160 72.5
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 8.2e-59 230.7 165 69.1
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 1.1e-58 230.3 151 79.5
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 3.1e-58 228.8 160 75.0
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 4.1e-58 228.4 161 71.4
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 4.1e-58 228.4 193 64.8
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 5.3e-58 228.0 162 70.4
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 6.9e-58 227.6 147 80.3
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 9.0e-58 227.3 165 70.9
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.2e-57 226.9 160 71.9
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 1.5e-57 226.5 161 73.9
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 1.5e-57 226.5 165 71.5
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 2.6e-57 225.7 148 77.0
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 4.5e-57 224.9 162 71.0
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 1.0e-56 223.8 161 72.7
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 1.0e-56 223.8 161 72.7
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 1.0e-56 223.8 161 73.3
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 1.3e-56 223.4 163 70.6
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 1.7e-56 223.0 161 72.7
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 2.9e-56 222.2 160 74.4
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 2.9e-56 222.2 160 71.9
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 3.8e-56 221.9 154 77.3
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 8.5e-56 220.7 156 70.5
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 8.5e-56 220.7 164 73.2
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.9e-55 219.5 164 73.2
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 2.5e-55 219.2 156 71.2
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 3.2e-55 218.8 159 73.0
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 4.2e-55 218.4 140 78.6
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 1.2e-54 216.9 159 73.0
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.6e-54 216.5 154 71.4
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.1e-54 216.1 145 77.2
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 2.1e-54 216.1 195 62.1
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 2.7e-54 215.7 158 72.2
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 2.7e-54 215.7 160 70.0
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 3.6e-54 215.3 159 71.7
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 6.1e-54 214.5 140 77.9
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 6.1e-54 214.5 160 68.8
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 7.9e-54 214.2 140 77.9
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 1.4e-53 213.4 157 71.3
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 1.8e-53 213.0 142 78.2
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 1.8e-53 213.0 158 69.0
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 2.3e-53 212.6 145 75.2
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 3.0e-53 212.2 159 68.6
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 3.0e-53 212.2 138 77.5
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 3.9e-53 211.8 158 70.3
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 8.8e-53 210.7 139 77.7
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.1e-52 210.3 154 68.8
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 2.0e-52 209.5 148 70.3
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 2.5e-52 209.1 143 76.2
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 2.5e-52 209.1 143 76.2
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 7.4e-52 207.6 146 74.0
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 9.7e-52 207.2 137 77.4
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 9.7e-52 207.2 158 70.3
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 9.7e-52 207.2 143 75.5
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 9.7e-52 207.2 142 76.1
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 1.7e-51 206.5 138 76.8
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 2.2e-51 206.1 160 67.5
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 3.7e-51 205.3 158 69.0
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 6.3e-51 204.5 154 66.2
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.7e-48 196.4 166 62.7
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 2.2e-48 196.1 124 79.8
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 2.5e-47 192.6 129 79.1
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 5.5e-47 191.4 181 58.6
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 9.4e-47 190.7 129 76.0
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 2.7e-46 189.1 154 64.3
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 6.1e-46 188.0 128 76.6
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 6.1e-46 188.0 136 71.3
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 7.9e-46 187.6 165 60.6
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 1.4e-45 186.8 122 78.7
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 2.3e-45 186.0 128 75.8
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 9.7e-44 180.6 129 75.2
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 1.2e-41 173.7 103 85.4
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 7.7e-41 171.0 150 62.0
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 1.5e-39 166.8 107 79.4
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 4.2e-39 165.2 103 84.5
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 1.2e-38 163.7 109 80.7
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 1.2e-38 163.7 153 58.2
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 6.1e-38 161.4 108 78.7
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 6.1e-38 161.4 101 81.2
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 5.2e-37 158.3 105 77.1
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 6.3e-35 151.4 118 66.1
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 9.1e-34 147.5 84 90.5
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 1.6e-33 146.7 110 69.1
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 4.5e-33 145.2 105 66.7
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 4.5e-33 145.2 142 55.6
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 1.7e-32 143.3 120 55.8
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 4.7e-30 135.2 81 81.5
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 5.7e-28 128.3 95 72.6
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 1.4e-21 107.1 60 88.3
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.5e-20 103.6 137 48.2
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 5.4e-18 95.1 124 43.5
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 5.4e-18 95.1 124 41.1
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 1.2e-17 94.0 98 54.1
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 8.6e-16 87.8 120 40.0
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 6.1e-14 81.6 63 66.7
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 8.0e-14 81.3 47 87.2
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 4.6e-09 65.5 47 68.1
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 3.0e-08 62.8 39 82.1
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 3.9e-08 62.4 48 66.7
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 3.9e-08 62.4 48 66.7
Zm00001eb297770 Zea mays HOM05D000289 ORTHO05D000208 9.5e-07 57.8 129 33.3
Aqoxy4G02387 Aquilegia oxysepala HOM05D000289 ORTHO05D000208 2.8e-06 56.2 126 32.5
CsaV3_3G034220 Cucumis sativus L. HOM05D000289 ORTHO05D000208 4.7e-06 55.5 115 34.8
Glyma.08G224900 Glycine max HOM05D005569 ORTHO05D007052 4.7e-06 55.5 30 76.7
CSS0047626 Camellia sinensis var. sinensis HOM05D000289 ORTHO05D000208 6.2e-06 55.1 124 32.3
VMungo0464G0531 Vigna mungo HOM05D000289 ORTHO05D000208 6.2e-06 55.1 124 29.8
Rhsim09G0185100 Rhododendron simsii HOM05D000289 ORTHO05D000208 8.0e-06 54.7 124 32.3


User provided reference genes

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