Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G054700 Theobroma cacao HOM05D007364 ORTHO05D009275 2.3e-73 278.9 146 100.0
Duzib235G1177 Durio zibethinus HOM05D007364 ORTHO05D009275 4.9e-60 234.6 145 85.5
Gohir.A05G115400 Gossypium hirsutum HOM05D007364 ORTHO05D009275 4.2e-59 231.5 146 84.9
Gohir.D05G115800 Gossypium hirsutum HOM05D007364 ORTHO05D009275 1.6e-58 229.6 146 84.2
Gorai.009G119800 Gossypium raimondii HOM05D007364 ORTHO05D009275 4.6e-58 228.0 146 83.6
Potri.010G254100 Populus trichocarpa HOM05D007364 ORTHO05D009275 2.0e-45 186.0 144 66.7
Manes.14G008700 Manihot esculenta HOM05D007364 ORTHO05D009275 2.9e-44 182.2 143 67.1
Ciclev10013953m.g Citrus clementina HOM05D007364 ORTHO05D009275 6.5e-44 181.0 144 66.0
Haze_16200 Corylus avellana HOM05D007364 ORTHO05D009275 1.3e-41 173.3 146 63.0
Atru.chr1.2614 Acer truncatum HOM05D007364 ORTHO05D009275 2.3e-41 172.6 144 63.2
Cfa003431 Carpinus fangiana HOM05D007364 ORTHO05D009275 6.7e-41 171.0 146 63.7
THA.LOC104812333 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 2.5e-40 169.1 149 59.1
TWI38G2254 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 4.3e-40 168.3 144 59.0
COL.COLO4_38285 Corchorus olitorius HOM05D007364 ORTHO05D009275 7.4e-40 167.5 102 87.3
TWI63G0101 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 1.6e-39 166.4 146 56.2
arahy.Tifrunner.gnm1.ann1.TFQ65X Arachis hypogaea HOM05D007364 ORTHO05D009275 1.1e-38 163.7 141 59.6
arahy.Tifrunner.gnm1.ann1.A7U39C Arachis hypogaea HOM05D007364 ORTHO05D009275 4.1e-38 161.8 141 58.2
Aa31LG7G1240 Aethionema arabicum HOM05D007364 ORTHO05D009275 2.0e-37 159.5 149 55.7
QL05p088447 Quercus lobata HOM05D007364 ORTHO05D009275 2.0e-37 159.5 143 60.8
TAR625G0136 Trochodendron aralioides HOM05D007364 ORTHO05D009275 2.6e-37 159.1 141 58.2
AT1G16790 Arabidopsis thaliana HOM05D007364 ORTHO05D009275 3.4e-37 158.7 144 58.3
CARHR017250 Cardamine hirsuta HOM05D007364 ORTHO05D009275 7.7e-37 157.5 144 55.6
AL1G28960 Arabidopsis lyrata HOM05D007364 ORTHO05D009275 1.7e-36 156.4 144 56.9
Ca_17791_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 1.7e-36 156.4 138 58.7
Ca_29552_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 1.7e-36 156.4 138 58.7
FvH4_6g36820 Fragaria vesca HOM05D007364 ORTHO05D009275 2.9e-36 155.6 143 56.6
FAN02G1908 Fragaria x ananassa HOM05D007364 ORTHO05D009275 2.9e-36 155.6 143 56.6
FAN14G5026 Fragaria x ananassa HOM05D007364 ORTHO05D009275 2.9e-36 155.6 143 56.6
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 3.8e-36 155.2 148 55.4
Carub.0001s1652 Capsella rubella HOM05D007364 ORTHO05D009275 3.8e-36 155.2 144 55.6
RcHm_v2.0_Chr2g0149211 Rosa chinensis HOM05D007364 ORTHO05D009275 3.8e-36 155.2 143 57.3
FAN05G2474 Fragaria x ananassa HOM05D007364 ORTHO05D009275 5.0e-36 154.8 141 56.7
BcaC07g38817 Brassica carinata HOM05D007364 ORTHO05D009275 6.5e-36 154.5 148 55.4
ClCG07G014710 Citrullus lanatus HOM05D007364 ORTHO05D009275 8.5e-36 154.1 146 56.8
Lj4g0012611 Lotus japonicus HOM05D007364 ORTHO05D009275 1.4e-35 153.3 122 63.1
BcaB03g13030 Brassica carinata HOM05D007364 ORTHO05D009275 3.2e-35 152.1 148 52.0
Thhalv10009015m.g Eutrema salsugineum HOM05D007364 ORTHO05D009275 3.2e-35 152.1 148 53.4
TAR636G2112 Trochodendron aralioides HOM05D007364 ORTHO05D009275 5.5e-35 151.4 148 55.4
Sp1g14930 Schrenkiella parvula HOM05D007364 ORTHO05D009275 7.2e-35 151.0 148 55.4
Glyma.08G130400 Glycine max HOM05D007364 ORTHO05D009275 9.4e-35 150.6 138 60.1
Psat7g058640 Pisum sativum HOM05D007364 ORTHO05D009275 9.4e-35 150.6 141 56.0
TPR.G6288 Trifolium pratense HOM05D007364 ORTHO05D009275 9.4e-35 150.6 141 55.3
MELO3C010416.2 Cucumis melo HOM05D007364 ORTHO05D009275 3.6e-34 148.7 142 55.6
Glyma.05G173100 Glycine max HOM05D007364 ORTHO05D009275 3.6e-34 148.7 122 62.3
PGR031G1732 Punica granatum HOM05D007364 ORTHO05D009275 6.1e-34 147.9 143 55.9
Prupe.3G024300 Prunus persica HOM05D007364 ORTHO05D009275 7.9e-34 147.5 148 54.1
Phvul.002G258200 Phaseolus vulgaris HOM05D007364 ORTHO05D009275 1.4e-33 146.7 143 57.3
Aqoxy5G03758 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 1.8e-33 146.4 118 58.5
A06p12720 Brassica napus HOM05D007364 ORTHO05D009275 1.8e-33 146.4 150 52.7
C05p15020 Brassica napus HOM05D007364 ORTHO05D009275 1.8e-33 146.4 150 52.0
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 2.3e-33 146.0 135 54.8
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 3.0e-33 145.6 135 54.1
BolC5t30217H Brassica oleracea HOM05D007364 ORTHO05D009275 3.9e-33 145.2 150 51.3
BraA06t24432Z Brassica rapa HOM05D007364 ORTHO05D009275 6.7e-33 144.4 150 52.0
MBI16_g18204_MAGBIO Magnolia biondii HOM05D007364 ORTHO05D009275 6.7e-33 144.4 143 51.0
VMungo0251G1224 Vigna mungo HOM05D007364 ORTHO05D009275 1.5e-32 143.3 123 59.3
Lalb_Chr07g0185511 Lupinus albus HOM05D007364 ORTHO05D009275 1.9e-32 142.9 122 57.4
Ah.15g094280 Amaranthus hybridus HOM05D007364 ORTHO05D009275 4.3e-32 141.7 121 57.9
CANSAT78G1269 Cannabis sativa HOM05D007364 ORTHO05D009275 5.7e-32 141.4 133 56.4
MD09G1166600 Malus domestica HOM05D007364 ORTHO05D009275 9.7e-32 140.6 143 52.4
Eucgr.J03185 Eucalyptus grandis HOM05D007364 ORTHO05D009275 1.7e-31 139.8 140 52.9
PSO063G5199 Papaver somniferum HOM05D007364 ORTHO05D009275 2.2e-31 139.4 146 50.0
FAN09G0058 Fragaria x ananassa HOM05D007364 ORTHO05D009275 1.1e-30 137.1 129 56.6
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 3.1e-30 135.6 135 55.6
AUR62001324 Chenopodium quinoa HOM05D007364 ORTHO05D009275 1.2e-29 133.7 135 48.9
Actinidia21894 Actinidia chinensis HOM05D007364 ORTHO05D009275 3.4e-29 132.1 134 55.2
Peaxi162Scf00062g00099 Petunia axillaris HOM05D007364 ORTHO05D009275 3.4e-29 132.1 129 53.5
AUR62025707 Chenopodium quinoa HOM05D007364 ORTHO05D009275 1.3e-28 130.2 152 46.7
Nitab4.5_0011805g0010 Nicotiana tabacum HOM05D007364 ORTHO05D009275 1.3e-28 130.2 133 50.4
EL10Ac7g18129 Beta vulgaris HOM05D007364 ORTHO05D009275 5.0e-28 128.3 121 50.4
Sc15g0001160 Simmondsia chinensis HOM05D000912 ORTHO05D008392 5.0e-28 128.3 145 47.6
Sopen12g034580 Solanum pennellii HOM05D007364 ORTHO05D009275 2.5e-27 125.9 127 52.8
PGSC0003DMG400004654 Solanum tuberosum HOM05D007364 ORTHO05D009275 3.2e-27 125.6 130 51.5
Solyc12g099960.1 Solanum lycopersicum HOM05D007364 ORTHO05D009275 5.5e-27 124.8 124 54.0
Cc09_g07400 Coffea canephora HOM05D007364 ORTHO05D009275 9.4e-27 124.0 144 50.0
PSO170G0377 Papaver somniferum HOM05D007364 ORTHO05D009275 2.7e-26 122.5 145 46.9
CAN.G484.12 Capsicum annuum HOM05D007364 ORTHO05D009275 7.9e-26 120.9 142 48.6
THA.LOC104808105 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 7.9e-26 120.9 141 47.5
Aqoxy2G03840 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 1.4e-25 120.2 102 56.9
Sed0001602 Sechium edule HOM05D007364 ORTHO05D009275 1.4e-25 120.2 115 50.4
Actinidia38815 Actinidia chinensis HOM05D007364 ORTHO05D009275 6.7e-25 117.9 130 51.5
BcaC05g25538 Brassica carinata HOM05D007364 ORTHO05D009275 6.7e-25 117.9 130 54.6
Hma1.2p1_0191F.1_g083440 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 8.8e-25 117.5 155 43.9
Hma1.2p1_3076F.1_g332395 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 8.8e-25 117.5 155 43.9
BcaB02g06675 Brassica carinata HOM05D007364 ORTHO05D009275 1.1e-22 110.5 95 58.9
Lsat_1_v5_gn_4_106261 Lactuca sativa HOM05D007364 ORTHO05D009275 1.8e-22 109.8 136 44.9
CsaV3_4G028750 Cucumis sativus L. HOM05D007364 ORTHO05D009275 4.1e-22 108.6 107 56.1
Nitab4.5_0001925g0240 Nicotiana tabacum HOM05D007364 ORTHO05D009275 9.1e-22 107.5 121 47.1
unitig_26.g10058 Utricularia gibba HOM05D007364 ORTHO05D009275 1.2e-21 107.1 144 44.4
DCAR_001424 Daucus carota HOM05D007364 ORTHO05D009275 2.6e-21 105.9 113 47.8
Atru.chr2.3597 Acer truncatum HOM05D007364 ORTHO05D009275 3.4e-21 105.5 71 70.4
Lj9P543T41 Lonicera japonica HOM05D007364 ORTHO05D009275 3.2e-19 99.0 107 51.4
Migut.I01209 Erythranthe guttata HOM05D007364 ORTHO05D009275 4.2e-19 98.6 135 39.3
HanXRQChr04g0125291 Helianthus annuus HOM05D007364 ORTHO05D009275 9.4e-19 97.4 140 42.1
Oeu047568.2 Olea europaea HOM05D007364 ORTHO05D009275 1.2e-18 97.1 120 42.5
CiPaw.01G207600 Carya illinoinensis HOM05D007364 ORTHO05D009275 4.7e-18 95.1 104 53.8
HPP92_017109 Vanilla planifolia HOM05D007364 ORTHO05D009275 1.8e-17 93.2 143 40.6
HPP92_017099 Vanilla planifolia HOM05D007364 ORTHO05D009275 2.3e-17 92.8 144 40.3
SalBow6G2338 Salvia bowleyana HOM05D007364 ORTHO05D009275 3.9e-17 92.0 124 40.3
CiPaw.01G094100 Carya illinoinensis HOM05D007364 ORTHO05D009275 2.0e-16 89.7 101 48.5
LjContig00484g0025496 Lotus japonicus HOM05D007364 ORTHO05D009275 1.7e-15 86.7 84 53.6
SGA_v2.0_scaffold71G23970 Striga asiatica HOM05D007364 ORTHO05D009275 2.2e-15 86.3 151 34.4
ECA232G2752 Erigeron canadensis HOM05D007364 ORTHO05D009275 2.0e-13 79.7 123 35.0
Mapoly0061s0135 Marchantia polymorpha HOM05D007364 ORTHO05D009275 3.6e-10 68.9 121 32.2
SEGI_24559 Sequoiadendron giganteum HOM05D007364 ORTHO05D009275 1.0e-09 67.4 109 38.5
AUR62015398 Chenopodium quinoa HOM05D007364 ORTHO05D009275 1.2e-08 63.9 62 43.5
AUR62040375 Chenopodium quinoa HOM05D007364 ORTHO05D009275 1.5e-08 63.5 60 45.0
Pp3c19_20210 Physcomitrium patens HOM05D007364 ORTHO05D009275 3.3e-08 62.4 136 30.9
SalBow7G1183 Salvia bowleyana HOM05D003223 ORTHO05D004865 2.8e-07 59.3 107 34.6


User provided reference genes

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