Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 3.7e-91 338.6 225 100.0
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 7.1e-66 254.6 223 62.3
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 3.1e-61 239.2 223 58.3
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 1.3e-59 233.8 231 65.8
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.3e-56 223.8 223 56.1
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.3e-56 223.8 223 56.1
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 6.6e-56 221.5 234 53.0
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 3.3e-55 219.2 236 50.4
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 1.6e-54 216.9 230 57.8
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 2.1e-54 216.5 231 54.5
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 5.8e-52 208.4 228 62.3
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 9.9e-52 207.6 238 52.9
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.7e-51 206.8 223 54.3
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 1.6e-49 200.3 233 48.5
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 6.0e-49 198.4 225 48.4
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 1.3e-48 197.2 134 70.1
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 1.3e-48 197.2 234 53.0
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 5.1e-48 195.3 136 70.6
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 5.1e-48 195.3 237 48.5
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 4.3e-47 192.2 121 73.6
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 7.4e-47 191.4 232 47.4
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 9.6e-47 191.0 136 66.9
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 1.3e-46 190.7 134 66.4
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 3.7e-46 189.1 137 68.6
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 3.7e-46 189.1 243 58.0
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 8.1e-46 188.0 136 66.9
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 5.3e-45 185.3 235 46.8
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 5.3e-45 185.3 233 46.4
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 1.2e-44 184.1 233 47.2
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 2.6e-44 183.0 136 65.4
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 4.5e-44 182.2 235 46.4
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 7.6e-44 181.4 235 46.0
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 1.0e-43 181.0 228 46.9
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 5.5e-42 175.3 235 44.3
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 1.4e-37 160.6 132 58.3
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 4.5e-36 155.6 134 59.7
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 3.2e-34 149.4 215 53.5
SHI31127 Sapria himalayana HOM05D005772 ORTHO05D006468 3.2e-34 149.4 208 42.8
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 1.8e-32 143.7 132 52.3
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 2.3e-32 143.3 121 57.9
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 3.0e-32 142.9 121 57.0
Duzib192G0394 Durio zibethinus HOM05D005772 ORTHO05D006468 3.0e-32 142.9 136 60.3
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 3.9e-32 142.5 121 57.0
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 5.1e-32 142.1 121 56.2
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 8.7e-32 141.4 132 52.3
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 1.1e-31 141.0 206 47.1
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 1.1e-31 141.0 206 47.1
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 1.6e-30 137.1 224 37.5
THA.LOC104813627 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 1.7e-27 127.1 268 39.2
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 6.5e-27 125.2 121 52.9
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 1.4e-26 124.0 102 65.7
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 4.2e-26 122.5 106 52.8
Haze_16205 Corylus avellana HOM05D005772 ORTHO05D006468 1.2e-25 120.9 183 45.9
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 7.4e-23 111.7 128 46.1
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 1.3e-22 110.9 125 44.8
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 1.3e-22 110.9 125 44.0
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.2e-22 110.2 126 46.8
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 6.3e-22 108.6 122 45.9
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 8.2e-22 108.2 132 44.7
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 8.2e-22 108.2 125 44.8
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 1.1e-21 107.8 134 42.5
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 3.1e-21 106.3 132 43.9
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 6.9e-21 105.1 137 42.3
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 9.1e-21 104.8 128 44.5
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 1.2e-20 104.4 122 44.3
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 1.2e-20 104.4 128 41.4
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 5.9e-20 102.1 127 41.7
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 7.7e-20 101.7 127 44.1
Atru.chr1.2602 Acer truncatum HOM05D005772 ORTHO05D006468 1.0e-19 101.3 146 41.8
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 1.0e-19 101.3 125 42.4
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 1.7e-19 100.5 132 43.2
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 2.9e-19 99.8 123 44.7
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 3.8e-19 99.4 125 44.0
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 3.8e-19 99.4 130 43.8
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 3.8e-19 99.4 118 41.5
FvH4_6g36610 Fragaria vesca HOM05D005772 ORTHO05D006468 3.8e-19 99.4 171 38.6
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 3.8e-19 99.4 127 42.5
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 6.5e-19 98.6 132 40.9
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 1.1e-18 97.8 130 40.0
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 1.4e-18 97.4 135 39.3
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 2.5e-18 96.7 127 40.9
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 2.5e-18 96.7 117 42.7
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 3.2e-18 96.3 117 42.7
Zm00001eb215960 Zea mays HOM05D046982 ORTHO05D006468 3.2e-18 96.3 134 38.1
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 4.2e-18 95.9 126 41.3
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 7.2e-18 95.1 124 37.9
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 1.2e-17 94.4 137 36.5
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 1.6e-17 94.0 132 41.7
Eucgr.A00749 Eucalyptus grandis HOM05D005772 ORTHO05D006468 1.8e-16 90.5 72 62.5
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 2.3e-16 90.1 125 38.4
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 3.9e-16 89.4 130 40.0
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 3.9e-16 89.4 118 40.7
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 3.9e-16 89.4 130 36.9
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 3.9e-16 89.4 131 40.5
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 5.1e-16 89.0 119 42.0
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 6.7e-16 88.6 123 39.8
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 4.4e-15 85.9 100 45.0
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 4.4e-15 85.9 118 37.3
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 1.7e-14 84.0 118 36.4
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 1.7e-14 84.0 129 38.0
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 3.7e-14 82.8 97 48.5
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 4.8e-14 82.4 92 47.8
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 4.8e-14 82.4 127 33.9
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 8.2e-14 81.6 119 32.8
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 1.1e-13 81.3 126 37.3
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 1.4e-13 80.9 102 43.1
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 4.1e-13 79.3 99 43.4
QL06p047014 Quercus lobata HOM05D001071 ORTHO05D006468 7.0e-13 78.6 132 46.2
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 1.6e-12 77.4 118 34.7
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 1.6e-12 77.4 130 32.3
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 4.5e-12 75.9 103 35.0
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 4.5e-12 75.9 103 35.0
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 1.7e-11 73.9 132 34.8
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 2.2e-11 73.6 146 33.6
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 2.9e-11 73.2 118 35.6
MD04G1024400 Malus domestica HOM05D005772 ORTHO05D006468 8.5e-11 71.6 47 66.0
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 2.5e-10 70.1 92 38.0
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 3.2e-10 69.7 82 42.7
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 9.4e-10 68.2 103 37.9
Dinv20324 Davidia involucrata HOM05D005772 ORTHO05D006468 1.2e-09 67.8 237 32.5
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 6.1e-09 65.5 112 33.0
C05p20700 Brassica napus HOM05D005772 ORTHO05D006468 1.8e-08 63.9 112 31.2
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 4.0e-08 62.8 135 33.3
BcaB07g32170 Brassica carinata HOM05D005772 ORTHO05D006468 1.5e-07 60.8 84 33.3
ATR0618G111 Amborella trichopoda HOM05D005772 ORTHO05D006468 4.4e-07 59.3 57 57.9
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 1.7e-06 57.4 79 48.1
Rhsim06G0101700 Rhododendron simsii HOM05D005772 ORTHO05D006468 3.7e-06 56.2 59 47.5


User provided reference genes

Program Settings