Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 0.0e+00 1087.4 540 100.0
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 6.3e-278 960.3 540 86.5
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 1.4e-274 949.1 540 87.2
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 5.7e-263 910.6 541 81.3
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 1.2e-260 902.9 545 80.6
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 1.6e-209 733.0 541 67.7
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 3.6e-209 731.9 543 66.3
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 1.8e-208 729.6 535 67.9
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 5.2e-208 728.0 540 66.9
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 4.9e-206 721.5 539 65.7
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 7.1e-205 717.6 547 66.2
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 6.6e-203 711.1 542 66.6
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 3.3e-202 708.8 544 64.3
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 2.1e-201 706.1 545 64.2
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 2.4e-200 702.6 541 64.9
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 4.0e-200 701.8 543 64.6
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 7.6e-199 697.6 547 64.2
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 1.4e-197 693.3 544 63.6
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 2.4e-197 692.6 540 63.3
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 9.3e-197 690.6 540 64.8
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 3.9e-195 685.3 543 63.2
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 8.7e-195 684.1 545 62.9
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 1.9e-194 682.9 539 63.5
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 6.2e-193 677.9 551 61.5
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 2.4e-192 676.0 545 62.0
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 9.0e-192 674.1 534 65.5
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 1.2e-191 673.7 540 62.2
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 5.5e-189 664.8 545 60.9
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 3.5e-188 662.1 542 62.4
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 7.4e-186 654.4 543 59.9
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 2.8e-185 652.5 639 55.9
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 3.7e-185 652.1 534 59.9
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 4.8e-185 651.7 540 59.1
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 6.2e-185 651.4 543 60.2
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 8.2e-185 651.0 581 58.2
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 3.1e-184 649.0 533 63.2
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 3.1e-184 649.0 533 63.0
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 9.0e-184 647.5 540 58.5
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 1.2e-183 647.1 540 58.3
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 4.5e-183 645.2 543 58.9
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 5.8e-183 644.8 540 58.3
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 7.6e-183 644.4 559 58.9
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 1.0e-182 644.0 540 58.7
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 2.9e-182 642.5 537 60.1
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 2.9e-182 642.5 543 57.6
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.2e-180 637.1 499 64.3
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 3.5e-180 635.6 540 57.2
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 8.7e-179 630.9 542 57.4
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 4.3e-178 628.6 543 57.5
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 4.3e-178 628.6 495 62.6
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 5.7e-178 628.2 536 59.1
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 9.7e-178 627.5 758 46.8
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 2.8e-177 625.9 536 59.5
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 3.7e-177 625.5 539 57.5
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 1.1e-176 624.0 536 59.1
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 1.4e-176 623.6 539 57.3
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 1.4e-176 623.6 539 60.9
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 2.4e-176 622.9 543 57.1
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 4.1e-176 622.1 533 59.3
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 6.9e-176 621.3 535 58.3
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 9.0e-176 620.9 536 58.6
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 3.4e-175 619.0 540 56.9
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 2.2e-174 616.3 540 56.7
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 8.5e-174 614.4 533 61.0
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 1.4e-173 613.6 538 57.1
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 3.6e-172 609.0 481 62.8
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 8.8e-171 604.4 536 58.4
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 1.5e-170 603.6 536 56.9
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 1.7e-169 600.1 535 55.1
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 4.8e-169 598.6 534 57.5
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 9.1e-168 594.3 540 55.6
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.6e-167 592.8 534 60.1
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 5.9e-167 591.7 533 56.7
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 1.8e-163 580.1 540 55.9
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 2.2e-161 573.2 537 55.7
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 7.7e-159 564.7 540 53.9
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 2.0e-154 550.1 479 60.1
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 5.7e-154 548.5 525 56.0
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 1.3e-150 537.3 525 53.3
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 5.0e-150 535.4 533 53.3
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 1.9e-149 533.5 485 55.5
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 2.5e-149 533.1 523 54.3
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 1.2e-148 530.8 472 57.0
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 3.3e-146 522.7 364 68.7
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 3.3e-146 522.7 536 52.4
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 1.5e-141 507.3 541 50.1
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 4.4e-138 495.7 544 50.6
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 2.4e-128 463.4 446 52.7
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 2.2e-121 440.3 536 46.8
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 1.7e-118 430.6 471 51.2
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 1.6e-116 424.1 538 45.0
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 4.7e-116 422.5 536 42.9
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 2.1e-108 397.1 542 41.7
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 2.8e-108 396.7 299 63.2
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 3.6e-108 396.4 353 56.7
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 6.8e-107 392.1 257 76.3
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 9.5e-101 371.7 206 85.4
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 3.1e-99 366.7 256 67.6
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 4.0e-99 366.3 279 67.7
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 3.8e-97 359.8 267 66.3
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 6.4e-89 332.4 268 63.4
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 5.1e-86 322.8 538 35.3
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 1.3e-84 318.2 282 56.4
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 1.1e-80 305.1 497 38.2
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.1e-80 305.1 315 54.6
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 2.2e-73 280.8 441 40.4
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 1.2e-66 258.5 268 52.2
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 2.6e-66 257.3 192 64.1
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 3.5e-63 246.9 269 51.7
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 4.2e-56 223.4 189 63.0
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 7.4e-37 159.5 124 66.1
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 9.7e-37 159.1 294 38.4
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 1.7e-36 158.3 434 30.4
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 2.0e-34 151.4 123 60.2
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 5.3e-27 126.7 112 61.6
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 1.6e-23 115.2 487 26.5
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 4.1e-19 100.5 140 42.9
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 1.2e-15 89.0 150 38.0
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 1.2e-15 89.0 150 38.0
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 6.1e-15 86.7 112 44.6
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 4.9e-12 77.0 106 39.6
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 3.2e-11 74.3 72 51.4
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 5.4e-11 73.6 326 23.9
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 3.5e-10 70.9 331 23.0
TAR628G0982 Trochodendron aralioides HOM05D008167 ORTHO05D010296 2.3e-09 68.2 345 23.2
Manes.02G154800 Manihot esculenta HOM05D008167 ORTHO05D010296 2.8e-07 61.2 343 21.6
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 4.7e-07 60.5 334 22.2
Dinv13035 Davidia involucrata HOM05D008167 ORTHO05D010296 3.1e-06 57.8 335 22.4
PSO133G0102 Papaver somniferum HOM05D008167 ORTHO05D010296 5.2e-06 57.0 363 21.5
arahy.Tifrunner.gnm1.ann1.R32LA5 Arachis hypogaea HOM05D008167 ORTHO05D010296 6.8e-06 56.6 326 22.4


User provided reference genes

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