Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G048300 Theobroma cacao HOM05D002370 ORTHO05D037785 1.4e-76 289.7 155 100.0
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 1.1e-57 226.9 141 87.2
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.1e-54 216.9 141 83.0
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.1e-54 216.9 141 83.0
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.1e-54 216.9 141 83.0
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 3.3e-54 215.3 141 83.7
Thecc.01G281900 Theobroma cacao HOM05D002370 ORTHO05D037785 4.3e-54 214.9 126 90.5
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 3.5e-48 195.3 141 78.0
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 3.5e-48 195.3 141 78.0
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 7.8e-48 194.1 141 73.0
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 7.8e-48 194.1 141 75.9
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 2.3e-47 192.6 141 73.0
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 5.1e-47 191.4 141 75.9
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 8.7e-47 190.7 141 72.3
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.1e-46 190.3 141 75.2
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 1.9e-46 189.5 141 72.3
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 3.3e-46 188.7 141 72.3
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 7.3e-46 187.6 141 70.9
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 9.6e-46 187.2 141 72.3
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 9.6e-46 187.2 141 73.0
Haze_10320 Corylus avellana HOM05D002370 ORTHO05D003878 2.1e-45 186.0 141 72.3
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 2.1e-45 186.0 141 71.6
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 2.1e-45 186.0 141 73.0
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 3.6e-45 185.3 141 70.9
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 6.2e-45 184.5 141 71.6
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 8.1e-45 184.1 141 69.5
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 8.1e-45 184.1 141 69.5
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 8.1e-45 184.1 141 70.2
MD10G1112000 Malus domestica HOM05D002370 ORTHO05D003878 1.1e-44 183.7 141 72.3
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 1.1e-44 183.7 141 70.2
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 2.4e-44 182.6 141 71.6
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 2.4e-44 182.6 141 70.2
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 3.1e-44 182.2 141 72.3
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 3.1e-44 182.2 141 70.9
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 3.1e-44 182.2 141 71.6
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 5.3e-44 181.4 141 70.9
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 5.3e-44 181.4 141 70.2
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 6.9e-44 181.0 141 71.6
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 6.9e-44 181.0 141 69.5
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 1.2e-43 180.3 141 70.2
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 2.0e-43 179.5 141 69.5
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 4.4e-43 178.3 141 70.9
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 4.4e-43 178.3 141 68.8
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 7.6e-43 177.6 141 68.1
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 9.9e-43 177.2 130 74.6
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 9.9e-43 177.2 141 68.8
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 9.9e-43 177.2 141 68.8
FAN24G1227 Fragaria x ananassa HOM05D002370 ORTHO05D003878 9.9e-43 177.2 141 68.8
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 9.9e-43 177.2 141 68.8
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 9.9e-43 177.2 141 69.5
Hma1.2p1_0661F.1_g197980 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 1.3e-42 176.8 141 70.2
Hma1.2p1_1758F.1_g301190 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 1.3e-42 176.8 141 70.2
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 1.3e-42 176.8 141 67.4
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 1.7e-42 176.4 141 67.4
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 1.7e-42 176.4 141 69.5
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 2.2e-42 176.0 141 68.1
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 2.2e-42 176.0 141 68.1
TAR625G0605 Trochodendron aralioides HOM05D002370 ORTHO05D003878 2.2e-42 176.0 141 69.5
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 6.4e-42 174.5 133 70.7
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 1.1e-41 173.7 141 66.7
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 1.4e-41 173.3 141 66.0
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 1.9e-41 172.9 141 66.0
Hma1.2p1_1051F.1_g252210 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 2.4e-41 172.6 141 67.4
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 3.2e-41 172.2 141 66.7
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 4.2e-41 171.8 141 64.5
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 4.2e-41 171.8 141 64.5
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 4.2e-41 171.8 141 66.0
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 4.2e-41 171.8 141 68.1
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 5.4e-41 171.4 141 64.5
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 7.1e-41 171.0 141 68.1
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 7.1e-41 171.0 141 68.1
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 9.3e-41 170.6 141 67.4
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 1.2e-40 170.2 141 68.1
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 3.5e-40 168.7 141 64.5
vmacro01937 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 4.6e-40 168.3 141 66.7
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 6.0e-40 167.9 141 63.8
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 6.0e-40 167.9 141 63.8
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 7.8e-40 167.5 156 61.5
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 1.0e-39 167.2 141 67.4
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 1.0e-39 167.2 130 70.8
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 1.3e-39 166.8 141 64.5
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 2.3e-39 166.0 136 66.9
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 2.3e-39 166.0 141 65.2
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 5.1e-39 164.9 141 64.5
CDE06G0012 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 6.6e-39 164.5 148 60.8
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 6.6e-39 164.5 141 66.7
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 6.6e-39 164.5 130 68.5
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 8.7e-39 164.1 141 64.5
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 1.5e-38 163.3 142 66.2
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 1.5e-38 163.3 142 66.2
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 1.9e-38 162.9 142 65.5
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 2.5e-38 162.5 142 65.5
SalBow6G1889 Salvia bowleyana HOM05D002370 ORTHO05D003878 2.5e-38 162.5 141 63.8
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 4.3e-38 161.8 141 63.8
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 4.3e-38 161.8 141 63.1
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 4.3e-38 161.8 141 63.1
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 5.6e-38 161.4 142 64.8
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 7.3e-38 161.0 142 63.4
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 1.3e-37 160.2 141 63.1
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 1.3e-37 160.2 141 63.8
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 1.3e-37 160.2 131 66.4
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 1.6e-37 159.8 133 64.7
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 1.6e-37 159.8 141 64.5
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 2.8e-37 159.1 127 70.9
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 3.6e-37 158.7 141 60.3
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 3.6e-37 158.7 136 64.0
CAN.G1627.7 Capsicum annuum HOM05D002370 ORTHO05D003878 6.2e-37 157.9 141 63.8
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 8.1e-37 157.5 136 61.8
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 8.1e-37 157.5 141 60.3
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 1.8e-36 156.4 141 62.4
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 1.8e-36 156.4 141 60.3
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 4.0e-36 155.2 134 68.7
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 5.3e-36 154.8 141 61.0
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 5.3e-36 154.8 136 61.8
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 6.9e-36 154.5 120 72.5
CAN.G1164.1 Capsicum annuum HOM05D002370 ORTHO05D003878 1.5e-35 153.3 133 63.9
CAN.G411.104 Capsicum annuum HOM05D002370 ORTHO05D003878 1.7e-34 149.8 136 61.0
CAN.G411.96 Capsicum annuum HOM05D002370 ORTHO05D003878 2.9e-34 149.1 141 60.3
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 4.9e-34 148.3 141 62.4
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 2.4e-33 146.0 141 60.3
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 9.3e-33 144.1 121 68.6
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 2.3e-31 139.4 121 66.1
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 3.3e-30 135.6 122 63.9
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 4.3e-30 135.2 146 52.1
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 2.8e-29 132.5 133 53.4
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 3.7e-29 132.1 129 56.6
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 1.4e-28 130.2 129 60.5
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 1.4e-28 130.2 123 61.0
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 5.3e-28 128.3 134 55.2
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 9.0e-28 127.5 122 59.8
CAN.G1627.3 Capsicum annuum HOM05D002370 ORTHO05D003878 2.9e-26 122.5 106 61.3
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 4.2e-25 118.6 121 54.5
Thecc.08G169400 Theobroma cacao HOM05D002370 ORTHO05D037785 1.6e-24 116.7 120 61.7
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 1.6e-24 116.7 124 57.3
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 2.3e-23 112.8 141 52.5
CAN.G289.58 Capsicum annuum HOM05D002370 ORTHO05D003878 2.1e-21 106.3 141 48.9
CAN.G1164.4 Capsicum annuum HOM05D002370 ORTHO05D003878 3.7e-21 105.5 133 50.4
CAN.G12816.1 Capsicum annuum HOM05D002370 ORTHO05D003878 5.0e-18 95.1 131 47.3
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 1.6e-16 90.1 76 68.4
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 2.7e-16 89.4 136 41.9
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 2.2e-13 79.7 123 40.7
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 1.1e-12 77.4 132 42.4
Cfa026368 Carpinus fangiana HOM05D002370 ORTHO05D003878 2.0e-11 73.2 144 34.7
CAN.G9920.1 Capsicum annuum HOM05D002370 ORTHO05D005166 7.9e-08 61.2 49 59.2


User provided reference genes

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