Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 9.7e-110 400.2 210 100.0
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 8.9e-95 350.5 211 89.1
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 1.1e-92 343.6 215 85.6
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 2.4e-92 342.4 215 85.1
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 2.2e-85 319.3 194 87.6
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 2.4e-84 315.8 202 82.7
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 1.7e-82 309.7 211 79.1
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 6.6e-82 307.8 211 77.7
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.5e-81 306.6 206 77.2
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 3.6e-80 302.0 206 77.2
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 6.2e-80 301.2 207 78.3
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 8.9e-79 297.4 211 75.4
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 5.8e-78 294.7 212 75.5
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 5.8e-78 294.7 212 75.5
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 7.5e-78 294.3 215 74.9
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 1.3e-77 293.5 220 74.1
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 4.1e-76 288.5 223 72.2
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 5.4e-76 288.1 197 78.2
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 1.6e-75 286.6 222 73.0
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 1.3e-74 283.5 209 72.2
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 1.7e-74 283.1 202 77.2
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 3.0e-74 282.3 206 74.3
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 8.6e-74 280.8 203 73.4
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 1.1e-73 280.4 208 72.6
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 5.6e-73 278.1 224 71.0
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 2.8e-72 275.8 209 73.2
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 3.6e-72 275.4 188 76.6
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 6.2e-72 274.6 190 77.9
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 6.2e-72 274.6 211 70.1
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 8.1e-72 274.2 202 73.8
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 1.8e-71 273.1 209 69.4
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 1.8e-71 273.1 208 70.7
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 3.1e-71 272.3 210 71.0
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 5.2e-71 271.6 211 73.0
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 5.2e-71 271.6 199 73.9
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 6.8e-71 271.2 210 67.6
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 8.9e-71 270.8 176 79.5
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 1.2e-70 270.4 212 70.3
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 4.4e-70 268.5 212 66.5
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 5.8e-70 268.1 218 65.6
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 7.5e-70 267.7 202 72.3
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 1.7e-69 266.5 209 69.9
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 4.9e-69 265.0 156 90.4
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 6.4e-69 264.6 228 65.4
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 8.3e-69 264.2 172 80.8
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 1.1e-68 263.8 156 90.4
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 2.4e-68 262.7 199 73.9
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 3.2e-68 262.3 203 69.0
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 4.1e-68 261.9 210 68.1
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.6e-67 260.0 224 66.1
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 2.1e-67 259.6 227 61.7
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 3.5e-67 258.8 208 67.3
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 4.6e-67 258.5 207 69.1
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 7.8e-67 257.7 179 77.1
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 1.3e-66 256.9 199 70.4
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 1.3e-66 256.9 204 66.2
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 2.3e-66 256.1 204 68.1
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 3.0e-66 255.8 197 71.6
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 3.9e-66 255.4 203 71.9
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 3.9e-66 255.4 209 68.9
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 5.1e-66 255.0 202 69.8
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 5.1e-66 255.0 208 67.3
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 1.5e-65 253.4 204 68.1
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 1.5e-65 253.4 193 69.4
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 1.9e-65 253.1 209 68.4
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 1.9e-65 253.1 197 72.1
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.9e-65 253.1 237 59.1
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 3.3e-65 252.3 196 69.9
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 3.3e-65 252.3 206 67.5
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 4.3e-65 251.9 208 68.3
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 5.6e-65 251.5 221 62.0
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 9.6e-65 250.8 214 65.4
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.6e-64 250.0 197 70.6
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 1.6e-64 250.0 179 74.3
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 3.6e-64 248.8 209 64.1
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 6.2e-64 248.1 201 68.2
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 6.2e-64 248.1 210 66.7
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 6.2e-64 248.1 205 66.8
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 6.2e-64 248.1 210 66.7
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 8.1e-64 247.7 206 66.5
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 8.1e-64 247.7 206 67.5
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 1.4e-63 246.9 214 66.4
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 1.4e-63 246.9 178 73.6
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.8e-63 246.5 189 68.8
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 2.4e-63 246.1 212 67.0
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 4.0e-63 245.4 210 68.1
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 5.2e-63 245.0 210 65.2
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 6.8e-63 244.6 149 83.9
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 6.8e-63 244.6 213 64.3
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 1.2e-62 243.8 212 66.5
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 1.2e-62 243.8 219 60.7
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 1.2e-62 243.8 210 65.2
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.2e-62 243.8 177 73.4
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 2.0e-62 243.0 200 68.0
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 2.6e-62 242.7 227 58.1
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 9.9e-62 240.7 199 71.4
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 1.3e-61 240.4 205 65.9
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 2.2e-61 239.6 211 64.5
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 4.9e-61 238.4 143 84.6
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 1.1e-60 237.3 196 66.3
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 1.9e-60 236.5 215 62.8
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 1.9e-60 236.5 215 62.8
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 1.2e-59 233.8 194 66.5
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 5.1e-58 228.4 202 63.4
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 1.9e-57 226.5 180 70.0
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 3.3e-57 225.7 178 71.3
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 4.3e-57 225.3 204 66.7
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 1.3e-56 223.8 203 65.5
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 1.3e-56 223.8 179 70.4
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 1.3e-56 223.8 176 68.8
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 2.1e-56 223.0 142 77.5
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 3.6e-56 222.2 160 73.8
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 8.1e-56 221.1 157 75.2
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 2.6e-54 216.1 200 60.0
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 2.4e-52 209.5 153 74.5
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 3.2e-52 209.1 197 62.4
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 2.7e-51 206.1 188 64.4
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 3.5e-51 205.7 200 58.0
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 9.6e-49 197.6 130 76.9
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 5.8e-46 188.3 182 59.3
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 2.9e-45 186.0 204 55.4
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 1.8e-42 176.8 209 54.5
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 5.6e-41 171.8 182 55.5
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 7.4e-41 171.4 133 69.2
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 9.6e-41 171.0 128 66.4
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 6.2e-40 168.3 135 65.9
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 8.1e-40 167.9 136 66.2
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 6.7e-34 148.3 120 64.2
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 2.5e-33 146.4 208 43.8
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 4.8e-32 142.1 142 58.5
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 4.8e-32 142.1 140 57.1
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.3e-29 134.0 129 61.2
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 1.9e-25 120.2 77 80.5
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 1.7e-21 107.1 70 77.1
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 1.7e-21 107.1 70 77.1
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 5.1e-18 95.5 67 73.1
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 9.7e-17 91.3 69 72.5
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 8.5e-13 78.2 138 36.2
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 5.1e-10 68.9 45 77.8


User provided reference genes

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