Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G041800 Theobroma cacao HOM05D007259 ORTHO05D009158 2.4e-95 352.1 165 100.0
Duzib235G0063 Durio zibethinus HOM05D007259 ORTHO05D009158 1.1e-87 326.6 165 91.5
Gohir.D06G118700 Gossypium hirsutum HOM05D007259 ORTHO05D009158 1.6e-86 322.8 165 87.9
Gorai.010G136500 Gossypium raimondii HOM05D007259 ORTHO05D009158 4.5e-86 321.2 165 87.3
Gohir.A06G114200 Gossypium hirsutum HOM05D007259 ORTHO05D009158 5.0e-85 317.8 165 86.1
Eucgr.F03958 Eucalyptus grandis HOM05D007259 ORTHO05D009158 9.1e-79 297.0 165 79.4
TWI75G0585 Tripterygium wilfordii HOM05D007259 ORTHO05D009158 9.1e-79 297.0 165 83.6
PSO170G4635 Papaver somniferum HOM05D007259 ORTHO05D009158 2.9e-77 292.0 166 79.5
CANSAT56G1631 Cannabis sativa HOM05D007259 ORTHO05D009158 8.5e-77 290.4 165 78.2
Ciclev10026584m.g Citrus clementina HOM05D007259 ORTHO05D009158 1.9e-76 289.3 165 78.8
PSO017G0751 Papaver somniferum HOM05D007259 ORTHO05D009158 1.9e-76 289.3 166 79.5
Hund00433 Selenicereus undatus HOM05D007259 ORTHO05D009158 2.5e-76 288.9 165 77.6
PGR102G1952 Punica granatum HOM05D007259 ORTHO05D009158 3.2e-76 288.5 165 79.4
Dinv21412 Davidia involucrata HOM05D007259 ORTHO05D009158 7.2e-76 287.3 165 77.0
CAN.G1932.2 Capsicum annuum HOM05D007259 ORTHO05D009158 9.4e-76 287.0 165 78.2
Actinidia36875 Actinidia chinensis HOM05D007259 ORTHO05D009158 1.6e-75 286.2 163 78.5
Lsat_1_v5_gn_5_8261 Lactuca sativa HOM05D007259 ORTHO05D009158 1.6e-75 286.2 165 78.2
Potri.001G044200 Populus trichocarpa HOM05D007259 ORTHO05D009158 1.6e-75 286.2 165 77.6
Atru.chr10.2413 Acer truncatum HOM05D007259 ORTHO05D009158 2.1e-75 285.8 165 77.6
Carub.0002s2668 Capsella rubella HOM05D007259 ORTHO05D009158 2.1e-75 285.8 165 78.8
Cfa001880 Carpinus fangiana HOM05D007259 ORTHO05D009158 2.1e-75 285.8 165 79.4
Rhsim08G0205600 Rhododendron simsii HOM05D007259 ORTHO05D009158 2.1e-75 285.8 163 79.1
Sc12g0008330 Simmondsia chinensis HOM05D007259 ORTHO05D009158 2.1e-75 285.8 161 78.3
FvH4_6g28630 Fragaria vesca HOM05D007259 ORTHO05D009158 8.0e-75 283.9 165 77.0
FAN14G4954 Fragaria x ananassa HOM05D007259 ORTHO05D009158 8.0e-75 283.9 165 77.0
VMungo0331G0163 Vigna mungo HOM05D007259 ORTHO05D009158 8.0e-75 283.9 163 77.9
HanXRQChr05g0153761 Helianthus annuus HOM05D007259 ORTHO05D009158 1.0e-74 283.5 165 75.8
Manes.04G102300 Manihot esculenta HOM05D007259 ORTHO05D009158 1.0e-74 283.5 165 79.4
RcHm_v2.0_Chr2g0132951 Rosa chinensis HOM05D007259 ORTHO05D009158 1.0e-74 283.5 165 76.4
CSS0004525 Camellia sinensis var. sinensis HOM05D007259 ORTHO05D009158 1.4e-74 283.1 163 76.7
FAN05G5272 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.4e-74 283.1 165 76.4
Sabra01G0030500 Salix brachista HOM05D007259 ORTHO05D009158 1.4e-74 283.1 165 77.6
Medtr4g007095 Medicago truncatula HOM05D007259 ORTHO05D009158 4.0e-74 281.6 165 76.4
Ah.01g006970 Amaranthus hybridus HOM05D007259 ORTHO05D009158 6.8e-74 280.8 162 75.9
A02p23100 Brassica napus HOM05D007259 ORTHO05D009158 6.8e-74 280.8 165 76.4
BraA02t07308Z Brassica rapa HOM05D007259 ORTHO05D009158 6.8e-74 280.8 165 76.4
BcaC03g15926 Brassica carinata HOM05D007259 ORTHO05D009158 8.8e-74 280.4 165 76.4
BolC2t09700H Brassica oleracea HOM05D007259 ORTHO05D009158 8.8e-74 280.4 165 76.4
Peaxi162Scf00207g00430 Petunia axillaris HOM05D007259 ORTHO05D009158 8.8e-74 280.4 165 75.2
TPR.G23079 Trifolium pratense HOM05D007259 ORTHO05D009158 8.8e-74 280.4 165 74.5
GSVIVG01015956001 Vitis vinifera HOM05D007259 ORTHO05D009158 8.8e-74 280.4 165 76.4
CiPaw.01G254600 Carya illinoinensis HOM05D007259 ORTHO05D009158 1.2e-73 280.0 165 78.2
Sp5g34900 Schrenkiella parvula HOM05D007259 ORTHO05D009158 1.2e-73 280.0 165 77.6
QL05p036089 Quercus lobata HOM05D007259 ORTHO05D009158 1.5e-73 279.6 166 78.3
C02p36870 Brassica napus HOM05D007259 ORTHO05D009158 2.0e-73 279.3 165 75.8
Thhalv10019243m.g Eutrema salsugineum HOM05D007259 ORTHO05D009158 2.6e-73 278.9 165 77.0
Sopen06g025720 Solanum pennellii HOM05D007259 ORTHO05D009158 2.6e-73 278.9 165 76.4
THA.LOC104812409 Tarenaya hassleriana HOM05D007259 ORTHO05D009158 2.6e-73 278.9 165 77.6
ClCG10G012930 Citrullus lanatus HOM05D007259 ORTHO05D009158 3.4e-73 278.5 165 75.8
AL2G40530 Arabidopsis lyrata HOM05D007259 ORTHO05D009158 4.4e-73 278.1 165 78.8
BcaB05g25221 Brassica carinata HOM05D007259 ORTHO05D009158 5.7e-73 277.7 165 75.8
AT1G80860 Arabidopsis thaliana HOM05D007259 ORTHO05D009158 1.3e-72 276.6 165 77.0
CARHR073610 Cardamine hirsuta HOM05D007259 ORTHO05D009158 1.7e-72 276.2 165 78.8
CsaV3_3G032790 Cucumis sativus L. HOM05D007259 ORTHO05D009158 1.7e-72 276.2 165 74.5
Solyc06g068470.3 Solanum lycopersicum HOM05D007259 ORTHO05D009158 1.7e-72 276.2 165 75.2
EL10Ac9g22206 Beta vulgaris HOM05D007259 ORTHO05D009158 2.2e-72 275.8 166 73.5
Lj5A81T88 Lonicera japonica HOM05D007259 ORTHO05D009158 2.8e-72 275.4 165 73.3
Lalb_Chr01g0012071 Lupinus albus HOM05D007259 ORTHO05D009158 2.8e-72 275.4 163 75.5
Phvul.010G161400 Phaseolus vulgaris HOM05D007259 ORTHO05D009158 2.8e-72 275.4 163 76.1
FAN09G1653 Fragaria x ananassa HOM05D007259 ORTHO05D009158 3.7e-72 275.0 164 76.2
Cc04_g05120 Coffea canephora HOM05D007259 ORTHO05D009158 4.9e-72 274.6 165 73.9
PGSC0003DMG400028490 Solanum tuberosum HOM05D007259 ORTHO05D009158 6.3e-72 274.2 165 74.5
TPR.G23090 Trifolium pratense HOM05D007259 ORTHO05D009158 8.3e-72 273.9 165 73.3
Glyma.08G218900 Glycine max HOM05D007259 ORTHO05D009158 1.1e-71 273.5 166 75.3
Medtr4g007090 Medicago truncatula HOM05D007259 ORTHO05D009158 3.1e-71 271.9 165 72.7
Lj3g0012869 Lotus japonicus HOM05D007259 ORTHO05D009158 5.4e-71 271.2 163 74.2
Aa31LG4G1140 Aethionema arabicum HOM05D007259 ORTHO05D009158 1.2e-70 270.0 164 74.4
Nn8g39898 Nelumbo nucifera HOM05D007259 ORTHO05D009158 1.2e-70 270.0 165 73.3
Prupe.3G098300 Prunus persica HOM05D007259 ORTHO05D009158 1.2e-70 270.0 165 74.5
SalBow6G4962 Salvia bowleyana HOM05D007259 ORTHO05D009158 1.6e-70 269.6 164 72.6
Oeu060130.1 Olea europaea HOM05D007259 ORTHO05D009158 2.0e-70 269.2 165 73.9
MSTRG.4677 Avicennia marina HOM05D007259 ORTHO05D009158 2.9e-69 265.4 165 74.5
Migut.D01126 Erythranthe guttata HOM05D007259 ORTHO05D009158 6.6e-69 264.2 163 73.6
Psat7g260280 Pisum sativum HOM05D007259 ORTHO05D009158 3.3e-68 261.9 158 74.7
SGA_v2.0_scaffold26G11300 Striga asiatica HOM05D007259 ORTHO05D009158 3.3e-68 261.9 163 71.8
Sed0006537 Sechium edule HOM05D007259 ORTHO05D009158 8.0e-67 257.3 165 70.3
Nitab4.5_0008962g0030 Nicotiana tabacum HOM05D007259 ORTHO05D009158 5.7e-65 251.1 144 77.1
MBI15_g08512_MAGBIO Magnolia biondii HOM05D007259 ORTHO05D009158 2.9e-64 248.8 162 69.1
Haze_16667 Corylus avellana HOM05D007259 ORTHO05D009158 2.7e-62 242.3 262 50.4
BcaB05g25224 Brassica carinata HOM05D007259 ORTHO05D009158 3.5e-62 241.9 165 69.7
Zm00001eb184520 Zea mays HOM05D007259 ORTHO05D009158 4.3e-60 235.0 161 67.1
Os02g0612100 Oryza sativa ssp. japonica HOM05D007259 ORTHO05D009158 3.6e-59 231.9 164 67.1
unitig_60.g25615 Utricularia gibba HOM05D007259 ORTHO05D009158 1.8e-58 229.6 202 56.9
ECA246G0776 Erigeron canadensis HOM05D007259 ORTHO05D009158 1.1e-55 220.3 126 79.4
Potri.003G182400 Populus trichocarpa HOM05D007259 ORTHO05D009158 6.6e-53 211.1 116 80.2
CDE12G0386 Ceratophyllum demersum HOM05D007259 ORTHO05D009158 1.5e-52 209.9 140 65.7
HPP92_010735 Vanilla planifolia HOM05D007259 ORTHO05D009158 1.9e-52 209.5 156 60.9
SMO141G0127 Selaginella moellendorffii HOM05D007259 ORTHO05D009158 6.8e-50 201.1 159 59.1
SEGI_39537 Sequoiadendron giganteum HOM05D007259 ORTHO05D009158 8.9e-50 200.7 155 59.4
DCAR_021369 Daucus carota HOM05D007259 ORTHO05D009158 3.4e-49 198.7 128 75.0
AagrBONN_evm.TU.Sc2ySwM_117.1157 Anthoceros agrestis HOM05D007259 ORTHO05D009158 5.4e-47 191.4 157 55.4
Pp3c6_3720 Physcomitrium patens HOM05D007259 ORTHO05D009158 2.1e-46 189.5 164 56.1
Glyma.07G022900 Glycine max HOM05D007259 ORTHO05D009158 6.2e-35 151.4 84 81.0
Aqoxy2G00331 Aquilegia oxysepala HOM05D001307 ORTHO05D001158 2.4e-34 149.4 91 70.3
vmacro19057 Vaccinium macrocarpon HOM05D007259 ORTHO05D009158 8.9e-34 147.5 82 81.7
MD17G1223400 Malus domestica HOM05D007259 ORTHO05D009158 3.4e-33 145.6 83 78.3
MD17G1223600 Malus domestica HOM05D007259 ORTHO05D009158 5.8e-33 144.8 85 71.8
Cpa.g.sc10.78 Carica papaya HOM05D007259 ORTHO05D009158 2.2e-32 142.9 85 74.1
Nitab4.5_0000886g0050 Nicotiana tabacum HOM05D007259 ORTHO05D009158 1.9e-31 139.8 91 64.8
FAN02G2583 Fragaria x ananassa HOM05D007259 ORTHO05D009158 2.4e-31 139.4 82 72.0
ATR0739G058 Amborella trichopoda HOM05D007259 ORTHO05D009158 3.2e-31 139.0 87 74.7
Lj5C80T7 Lonicera japonica HOM05D007259 ORTHO05D009158 8.7e-29 131.0 82 68.3
MELO3C026739.2 Cucumis melo HOM05D007259 ORTHO05D009158 9.6e-28 127.5 82 65.9
HPP92_010738 Vanilla planifolia HOM05D007259 ORTHO05D009158 4.0e-26 122.1 94 61.7
SalBow8G2481 Salvia bowleyana HOM05D007259 ORTHO05D009158 1.5e-17 93.6 71 67.6
COL.COLO4_26703 Corchorus olitorius HOM05D007259 ORTHO05D009158 4.6e-14 82.0 43 86.0


User provided reference genes

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