Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G034200 Theobroma cacao HOM05D000840 ORTHO05D000670 3.0e-97 358.6 191 100.0
Atru.chr4.1644_Atru.chr4.1657 Acer truncatum HOM05D000840 ORTHO05D000670 7.2e-19 98.2 185 39.5
Ciclev10024717m.g Citrus clementina HOM05D000840 ORTHO05D000670 9.4e-19 97.8 179 39.7
Glyma.13G367700 Glycine max HOM05D000840 ORTHO05D000670 5.2e-17 92.0 191 36.6
Thecc.06G034100 Theobroma cacao HOM05D000840 ORTHO05D000670 8.8e-17 91.3 171 40.4
Potri.001G204900 Populus trichocarpa HOM05D000840 ORTHO05D000670 1.3e-15 87.4 184 35.3
QL05p033046 Quercus lobata HOM05D000840 ORTHO05D000670 1.3e-15 87.4 178 36.5
Potri.003G012400 Populus trichocarpa HOM05D000840 ORTHO05D000670 2.2e-15 86.7 181 37.6
Phvul.005G180200 Phaseolus vulgaris HOM05D000840 ORTHO05D000670 5.3e-14 82.0 171 37.4
Manes.04G107400 Manihot esculenta HOM05D000840 ORTHO05D000670 9.1e-14 81.3 177 36.2
VMungo1080G0802 Vigna mungo HOM05D000840 ORTHO05D000670 9.1e-14 81.3 173 37.6
PGR044G1495 Punica granatum HOM05D000840 ORTHO05D000670 2.7e-13 79.7 181 34.3
Psat5g304200 Pisum sativum HOM05D000840 ORTHO05D000670 5.9e-13 78.6 184 35.3
Sabra03G0016100 Salix brachista HOM05D000840 ORTHO05D000670 7.7e-13 78.2 178 36.0
CiPaw.02G159400 Carya illinoinensis HOM05D000840 ORTHO05D000670 2.9e-12 76.3 176 36.4
Glyma.15G005500 Glycine max HOM05D000840 ORTHO05D000670 2.9e-12 76.3 178 34.8
Thecc.06G034400 Theobroma cacao HOM05D000840 ORTHO05D000670 5.0e-12 75.5 152 37.5
Lj3g0027916 Lotus japonicus HOM05D000840 ORTHO05D000670 6.5e-12 75.1 173 34.7
Eucgr.J00090 Eucalyptus grandis HOM05D000840 ORTHO05D000670 3.2e-11 72.8 166 35.5
CANSAT56G3623 Cannabis sativa HOM05D000840 ORTHO05D000670 4.2e-11 72.4 187 32.6
Gorai.009G126200 Gossypium raimondii HOM05D000840 ORTHO05D000670 5.5e-11 72.0 179 35.8
Gohir.A05G121700 Gossypium hirsutum HOM05D000840 ORTHO05D000670 1.2e-10 70.9 176 35.8
TPR.G38700 Trifolium pratense HOM05D000840 ORTHO05D000670 1.2e-10 70.9 178 34.8
CiPaw.01G251200 Carya illinoinensis HOM05D000840 ORTHO05D000670 1.6e-10 70.5 164 36.0
Duzib235G0104 Durio zibethinus HOM05D000840 ORTHO05D000670 2.1e-10 70.1 179 35.2
Rhsim01G0122800 Rhododendron simsii HOM05D000840 ORTHO05D000670 2.1e-10 70.1 176 34.7
Rhsim01G0123000 Rhododendron simsii HOM05D000840 ORTHO05D000670 2.1e-10 70.1 178 35.4
Duzib235G1450 Durio zibethinus HOM05D000840 ORTHO05D000670 2.7e-10 69.7 92 53.3
Manes.11G061900 Manihot esculenta HOM05D000840 ORTHO05D000670 2.7e-10 69.7 170 35.9
Dinv31533 Davidia involucrata HOM05D000840 ORTHO05D000670 3.6e-10 69.3 175 34.9
Medtr2g104400 Medicago truncatula HOM05D000840 ORTHO05D000670 3.6e-10 69.3 172 33.7
TWI12G0605 Tripterygium wilfordii HOM05D000840 ORTHO05D000670 4.7e-10 68.9 164 35.4
Cpa.g.sc14.207 Carica papaya HOM05D000840 ORTHO05D000670 6.1e-10 68.6 164 37.2
CiPaw.02G159300 Carya illinoinensis HOM05D000840 ORTHO05D000670 8.0e-10 68.2 79 50.6
arahy.Tifrunner.gnm1.ann1.40JDZM Arachis hypogaea HOM05D000840 ORTHO05D000670 1.8e-09 67.0 174 33.3
CANSAT56G1456 Cannabis sativa HOM05D000840 ORTHO05D000670 2.3e-09 66.6 191 32.5
MD11G1036600 Malus domestica HOM05D000840 ORTHO05D000670 3.0e-09 66.2 184 37.0
RcHm_v2.0_Chr5g0075871 Rosa chinensis HOM05D000840 ORTHO05D000670 5.2e-09 65.5 173 32.9
MD03G1032700 Malus domestica HOM05D000840 ORTHO05D000670 6.8e-09 65.1 175 35.4
MD03G1033400 Malus domestica HOM05D000840 ORTHO05D000670 1.5e-08 63.9 179 35.2
Glyma.08G214900 Glycine max HOM05D000840 ORTHO05D000670 4.4e-08 62.4 185 30.3
Peaxi162Scf00195g00830 Petunia axillaris HOM05D000840 ORTHO05D000670 4.4e-08 62.4 173 35.3
Cc00_g11640 Coffea canephora HOM05D000840 ORTHO05D000670 5.7e-08 62.0 179 32.4
Phvul.010G157900 Phaseolus vulgaris HOM05D000840 ORTHO05D000670 5.7e-08 62.0 60 53.3
VMungo0331G0091 Vigna mungo HOM05D000840 ORTHO05D000670 5.7e-08 62.0 59 55.9
SGA_v2.0_scaffold172G38982 Striga asiatica HOM05D000840 ORTHO05D000670 9.8e-08 61.2 173 33.5
FAN21G2894 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.3e-07 60.8 177 33.3
Nitab4.5_0004105g0020 Nicotiana tabacum HOM05D000840 ORTHO05D000670 1.3e-07 60.8 169 32.5
Cc00_g09670 Coffea canephora HOM05D000840 ORTHO05D000670 2.2e-07 60.1 177 32.8
Gohir.D05G122700 Gossypium hirsutum HOM05D000840 ORTHO05D000670 2.2e-07 60.1 174 33.3
Medtr4g009740 Medicago truncatula HOM05D000840 ORTHO05D000670 4.8e-07 58.9 171 32.7
MD03G1033700 Malus domestica HOM05D000840 ORTHO05D000670 8.3e-07 58.2 169 34.9
TAR633G2034 Trochodendron aralioides HOM05D000840 ORTHO05D000670 8.3e-07 58.2 169 34.3
Lalb_Chr24g0395381 Lupinus albus HOM05D000840 ORTHO05D000670 1.1e-06 57.8 176 29.5
COL.COLO4_11846 Corchorus olitorius HOM05D000840 ORTHO05D000670 1.8e-06 57.0 159 35.2
FvH4_3g42370 Fragaria vesca HOM05D000840 ORTHO05D000670 1.8e-06 57.0 173 32.9
FAN11G2882 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.8e-06 57.0 173 32.9
FAN28G2945 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.8e-06 57.0 173 32.9
FAN16G1995 Fragaria x ananassa HOM05D000840 ORTHO05D000670 2.4e-06 56.6 179 31.8
Nn7g37000 Nelumbo nucifera HOM05D000840 ORTHO05D000670 3.1e-06 56.2 174 27.6
Haze_16613 Corylus avellana HOM05D000840 ORTHO05D000670 4.1e-06 55.8 153 34.6
Cpa.g.sc10.131 Carica papaya HOM05D000840 ORTHO05D000670 5.4e-06 55.5 176 31.8
Cfa001928 Carpinus fangiana HOM05D000840 ORTHO05D000670 5.4e-06 55.5 160 33.1
Duzib160G0548 Durio zibethinus HOM05D000840 ORTHO05D000670 5.4e-06 55.5 184 29.3
vmacro21082 Vaccinium macrocarpon HOM05D000840 ORTHO05D000670 5.4e-06 55.5 83 42.2
CsaV3_7G006140 Cucumis sativus L. HOM05D000840 ORTHO05D000670 7.0e-06 55.1 173 29.5
Nn2g14599 Nelumbo nucifera HOM05D000840 ORTHO05D000670 7.0e-06 55.1 159 33.3
ClCG09G013510 Citrullus lanatus HOM05D000840 ORTHO05D000670 9.1e-06 54.7 173 28.9
THA.LOC104808194 Tarenaya hassleriana HOM05D000840 ORTHO05D000670 9.1e-06 54.7 158 33.5


User provided reference genes

Program Settings