Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 7.8e-71 270.4 140 100.0
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 4.1e-56 221.5 140 82.1
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 2.4e-48 195.7 141 73.8
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 1.3e-46 189.9 141 72.3
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 5.1e-46 188.0 139 72.7
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 1.5e-45 186.4 140 74.3
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 4.3e-29 131.7 135 56.3
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 8.1e-28 127.5 140 51.4
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 1.4e-27 126.7 93 72.0
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 2.4e-27 125.9 114 57.0
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 1.5e-26 123.2 149 48.3
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 2.6e-26 122.5 141 50.4
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 4.5e-26 121.7 143 50.3
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 2.2e-25 119.4 113 57.5
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 2.2e-25 119.4 142 53.5
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 8.4e-25 117.5 114 55.3
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 5.5e-24 114.8 141 48.9
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 2.1e-23 112.8 127 49.6
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 1.3e-22 110.2 146 48.6
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 8.7e-22 107.5 139 50.4
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 1.5e-21 106.7 104 54.8
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 2.5e-21 105.9 135 51.1
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 2.5e-21 105.9 137 47.4
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 5.6e-21 104.8 94 57.4
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 7.4e-21 104.4 90 63.3
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 9.6e-21 104.0 134 48.5
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 9.6e-21 104.0 154 48.7
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.3e-20 103.6 134 48.5
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 2.1e-20 102.8 133 48.1
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 3.7e-20 102.1 91 54.9
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 3.7e-20 102.1 139 46.0
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 4.8e-20 101.7 134 47.8
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 8.1e-20 100.9 88 61.4
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 1.4e-19 100.1 133 45.9
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 1.4e-19 100.1 142 45.8
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 1.8e-19 99.8 97 57.7
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 1.8e-19 99.8 82 61.0
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 2.4e-19 99.4 109 51.4
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 3.1e-19 99.0 141 46.1
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 3.1e-19 99.0 138 44.2
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 4.0e-19 98.6 97 57.7
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 5.3e-19 98.2 96 57.3
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 5.3e-19 98.2 146 46.6
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 2.0e-18 96.3 62 75.8
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 2.6e-18 95.9 133 45.9
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 4.5e-18 95.1 140 45.7
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 5.8e-18 94.7 118 48.3
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 7.6e-18 94.4 98 53.1
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 1.0e-17 94.0 85 62.4
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 1.3e-17 93.6 147 44.9
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 1.7e-17 93.2 133 44.4
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 2.2e-17 92.8 94 55.3
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 2.9e-17 92.4 133 44.4
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 3.8e-17 92.0 133 43.6
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 3.8e-17 92.0 133 43.6
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 4.9e-17 91.7 138 44.2
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 6.5e-17 91.3 119 47.9
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 6.5e-17 91.3 100 53.0
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 8.4e-17 90.9 138 43.5
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 1.1e-16 90.5 131 44.3
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 1.4e-16 90.1 133 42.9
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 1.4e-16 90.1 133 42.9
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 1.4e-16 90.1 133 42.9
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 2.5e-16 89.4 141 44.0
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 7.1e-16 87.8 108 46.3
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 9.3e-16 87.4 124 43.5
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 9.3e-16 87.4 62 71.0
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 1.6e-15 86.7 64 62.5
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 1.6e-15 86.7 87 56.3
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 1.6e-15 86.7 81 54.3
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 2.7e-15 85.9 64 62.5
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 3.9e-14 82.0 120 43.3
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 6.7e-14 81.3 141 41.1
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 8.7e-14 80.9 60 66.7
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 8.7e-14 80.9 86 54.7
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 8.7e-14 80.9 86 54.7
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 8.7e-14 80.9 70 57.1
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 1.1e-13 80.5 105 48.6
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 3.3e-13 79.0 82 54.9
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 5.7e-13 78.2 116 39.7
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 1.3e-12 77.0 91 51.6
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 1.3e-12 77.0 95 48.4
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.3e-12 77.0 52 67.3
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 1.6e-12 76.6 58 67.2
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 2.8e-12 75.9 81 46.9
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 2.8e-12 75.9 137 40.1
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 3.7e-12 75.5 93 48.4
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 1.1e-11 73.9 73 53.4
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 3.1e-11 72.4 60 60.0
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 4.1e-11 72.0 54 66.7
vmacro16886 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 5.3e-11 71.6 50 72.0
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 1.2e-10 70.5 95 47.4
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 2.0e-10 69.7 58 62.1
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 2.6e-10 69.3 104 42.3
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 5.9e-10 68.2 80 47.5
CARHR091010 Cardamine hirsuta HOM05D007527 ORTHO05D009523 5.9e-10 68.2 46 67.4
Nitab4.5_0006484g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 1.6e-07 60.1 75 42.7
Mapoly0006s0085 Marchantia polymorpha HOM05D007527 ORTHO05D009523 2.1e-07 59.7 82 42.7
QL05p030704 Quercus lobata HOM05D007527 ORTHO05D009523 5.1e-06 55.1 83 42.2


User provided reference genes

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