Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G029800 Theobroma cacao HOM05D000007 ORTHO05D020500 9.6e-58 226.5 104 100.0
COL.COLO4_12912 Corchorus olitorius HOM05D000007 ORTHO05D020500 3.2e-13 78.6 91 44.0
COL.COLO4_11922 Corchorus olitorius HOM05D000007 ORTHO05D000039 4.6e-12 74.7 86 51.2
COL.COLO4_12911 Corchorus olitorius HOM05D000007 ORTHO05D020500 7.9e-12 73.9 97 41.2
COL.COLO4_11926 Corchorus olitorius HOM05D000007 ORTHO05D020500 1.1e-10 70.1 85 47.1
Thecc.06G029700 Theobroma cacao HOM05D000007 ORTHO05D000039 1.1e-10 70.1 90 43.3
COL.COLO4_11920 Corchorus olitorius HOM05D000007 ORTHO05D000039 3.3e-10 68.6 74 47.3
COL.COLO4_11925 Corchorus olitorius HOM05D000007 ORTHO05D000039 7.4e-10 67.4 87 43.7
Thecc.06G029600 Theobroma cacao HOM05D000007 ORTHO05D000039 1.3e-09 66.6 85 47.1
COL.COLO4_12909 Corchorus olitorius HOM05D000007 ORTHO05D020500 1.7e-09 66.2 91 41.8
COL.COLO4_11917 Corchorus olitorius HOM05D000007 ORTHO05D020500 8.2e-09 63.9 86 44.2
COL.COLO4_11919 Corchorus olitorius HOM05D000007 ORTHO05D000039 1.8e-08 62.8 89 46.1
QL06p035449 Quercus lobata HOM05D000007 ORTHO05D000521 3.1e-08 62.0 83 39.8
MD09G1191300 Malus domestica HOM05D000007 ORTHO05D000039 5.3e-08 61.2 88 34.1
Actinidia12094 Actinidia chinensis HOM05D000007 ORTHO05D000521 1.2e-07 60.1 71 40.8
Dinv24454 Davidia involucrata HOM05D000007 ORTHO05D000039 3.4e-07 58.5 73 34.2
SalBow7G4817 Salvia bowleyana HOM05D000007 ORTHO05D000039 3.4e-07 58.5 77 37.7
Thecc.07G075500 Theobroma cacao HOM05D000007 ORTHO05D000039 3.4e-07 58.5 80 35.0
TAR626G0319 Trochodendron aralioides HOM05D000007 ORTHO05D000017 4.5e-07 58.2 85 35.3
COL.COLO4_11924 Corchorus olitorius HOM05D000007 ORTHO05D000039 5.9e-07 57.8 94 38.3
COL.COLO4_25431 Corchorus olitorius HOM05D000007 ORTHO05D000521 5.9e-07 57.8 70 35.7
Dinv15480 Davidia involucrata HOM05D000007 ORTHO05D000039 5.9e-07 57.8 94 38.3
MSTRG.6523 Avicennia marina HOM05D000007 ORTHO05D000039 7.7e-07 57.4 76 36.8
Dinv24458 Davidia involucrata HOM05D000007 ORTHO05D000039 7.7e-07 57.4 70 38.6
CiPaw.13G053300 Carya illinoinensis HOM05D000007 ORTHO05D000521 1.0e-06 57.0 81 37.0
Lj8P116T38 Lonicera japonica HOM05D000007 ORTHO05D000039 1.0e-06 57.0 85 34.1
Thecc.06G029300 Theobroma cacao HOM05D000007 ORTHO05D000017 1.0e-06 57.0 75 42.7
Actinidia11172 Actinidia chinensis HOM05D000007 ORTHO05D000039 1.3e-06 56.6 78 37.2
Prupe.1G188300 Prunus persica HOM05D000007 ORTHO05D000039 2.2e-06 55.8 95 30.5
Sabra16G0259900 Salix brachista HOM05D000007 ORTHO05D000521 2.2e-06 55.8 66 34.8
Cpa.g.sc483.2 Carica papaya HOM05D000007 ORTHO05D000521 2.9e-06 55.5 59 45.8
Gohir.D11G296400 Gossypium hirsutum HOM05D000007 ORTHO05D000039 2.9e-06 55.5 80 33.8
Gorai.007G319500 Gossypium raimondii HOM05D000007 ORTHO05D000039 2.9e-06 55.5 80 33.8
PSO421G0673 Papaver somniferum HOM05D000007 ORTHO05D000017 2.9e-06 55.5 67 41.8
Rhsim07G0005800 Rhododendron simsii HOM05D000007 ORTHO05D000039 2.9e-06 55.5 86 31.4
Dinv19778 Davidia involucrata HOM05D000007 ORTHO05D000039 3.8e-06 55.1 100 37.0
Aqoxy4G02021 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 5.0e-06 54.7 73 34.2
RcHm_v2.0_Chr1g0344741 Rosa chinensis HOM05D000007 ORTHO05D000039 5.0e-06 54.7 80 32.5
COL.COLO4_10297 Corchorus olitorius HOM05D000007 ORTHO05D000039 6.5e-06 54.3 94 37.2
Dinv44150 Davidia involucrata HOM05D000007 ORTHO05D000017 6.5e-06 54.3 89 29.2
Eucgr.B00632 Eucalyptus grandis HOM05D000007 ORTHO05D007631 6.5e-06 54.3 77 33.8
COL.COLO4_09169 Corchorus olitorius HOM05D000007 ORTHO05D000039 8.5e-06 53.9 94 36.2
Haze_05545 Corylus avellana HOM05D000007 ORTHO05D000017 8.5e-06 53.9 64 43.8
Lj2C989T3 Lonicera japonica HOM05D000007 ORTHO05D000039 8.5e-06 53.9 71 39.4
QL11p050671 Quercus lobata HOM05D000007 ORTHO05D000039 8.5e-06 53.9 72 38.9
Sabra11G0105200 Salix brachista HOM05D000007 ORTHO05D000039 8.5e-06 53.9 78 30.8


User provided reference genes

Program Settings