Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 3.9e-252 874.4 468 100.0
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 6.4e-178 627.9 473 73.2
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 1.9e-177 626.3 381 84.5
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.4e-177 624.8 480 72.5
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.4e-161 573.5 424 74.3
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 3.8e-130 469.2 448 58.3
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 4.4e-126 455.7 523 52.0
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 7.4e-126 454.9 458 55.5
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 2.4e-124 449.9 485 53.4
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 2.4e-124 449.9 477 54.1
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.3e-122 444.1 478 53.8
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 3.8e-122 442.6 448 55.8
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 7.2e-121 438.3 490 53.1
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 2.7e-120 436.4 481 54.1
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 6.1e-120 435.3 433 55.2
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.0e-119 434.5 488 51.8
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.8e-119 433.7 476 50.8
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 2.6e-118 429.9 475 51.2
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 3.3e-118 429.5 475 51.6
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 5.7e-118 428.7 475 52.4
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 6.3e-117 425.2 459 53.6
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 8.2e-117 424.9 425 58.6
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 5.3e-116 422.2 492 51.8
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 3.8e-114 416.0 440 56.4
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 2.5e-113 413.3 437 54.9
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 7.2e-113 411.8 412 55.6
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 2.1e-112 410.2 482 47.3
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 3.6e-112 409.5 467 51.8
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 4.7e-112 409.1 487 50.1
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 4.7e-112 409.1 488 50.6
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 6.1e-112 408.7 451 52.8
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 6.1e-112 408.7 484 51.0
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 4.0e-111 406.0 436 54.4
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 1.2e-110 404.4 464 51.3
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 7.5e-110 401.7 452 51.3
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 2.8e-109 399.8 460 50.9
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 2.4e-108 396.7 431 54.1
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 5.4e-108 395.6 437 51.3
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 1.6e-107 394.0 434 53.9
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 8.5e-106 388.3 476 51.9
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 5.5e-105 385.6 490 48.0
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.6e-104 384.0 424 52.1
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.6e-104 384.0 424 52.1
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 4.7e-104 382.5 451 49.0
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 8.0e-104 381.7 487 48.5
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 1.8e-103 380.6 428 50.9
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 8.8e-103 378.3 410 53.2
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 5.7e-102 375.6 434 49.1
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 1.7e-101 374.0 486 47.7
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 5.4e-100 369.0 458 48.0
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 5.5e-97 359.0 459 48.6
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 1.0e-95 354.8 449 47.0
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 5.4e-92 342.4 397 51.6
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 4.3e-89 332.8 425 49.4
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.2e-85 320.5 417 46.3
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 2.8e-80 303.5 460 42.4
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 8.9e-79 298.5 393 44.3
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 4.1e-76 289.7 408 44.1
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 2.5e-73 280.4 182 79.1
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 4.7e-72 276.2 412 41.7
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 2.0e-70 270.8 393 41.7
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 4.9e-69 266.2 406 40.6
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 1.4e-68 264.6 318 52.5
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 9.2e-68 261.9 400 42.5
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 9.2e-68 261.9 398 40.7
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.2e-67 261.5 400 42.2
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 4.6e-67 259.6 446 40.6
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 4.7e-64 249.6 396 39.4
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 1.4e-63 248.1 385 41.3
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 3.1e-63 246.9 434 38.7
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 4.0e-63 246.5 414 38.2
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 5.2e-63 246.1 339 45.4
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 2.0e-62 244.2 391 38.1
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 3.4e-62 243.4 397 39.0
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 2.2e-61 240.7 403 37.2
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 2.2e-61 240.7 385 38.2
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 4.9e-61 239.6 389 39.3
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 7.1e-60 235.7 405 39.3
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 4.6e-59 233.0 392 38.0
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 4.6e-59 233.0 387 36.4
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 1.0e-58 231.9 389 36.5
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 1.3e-58 231.5 392 37.8
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 1.3e-58 231.5 392 37.8
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 1.3e-58 231.5 392 37.8
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 2.3e-58 230.7 388 39.7
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 3.0e-58 230.3 329 43.8
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 3.3e-57 226.9 391 37.3
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 7.3e-57 225.7 415 38.3
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.1e-56 224.2 392 37.5
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 4.0e-55 219.9 173 64.7
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 2.0e-54 217.6 418 36.8
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 8.4e-53 212.2 329 40.7
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 7.1e-52 209.1 355 37.5
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 7.9e-51 205.7 316 41.1
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.0e-50 205.3 310 40.3
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 3.0e-50 203.8 372 37.9
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 6.6e-50 202.6 383 36.0
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 6.6e-50 202.6 328 39.3
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 6.2e-48 196.1 386 36.5
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 1.4e-47 194.9 416 34.6
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 4.0e-47 193.4 136 68.4
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 9.0e-47 192.2 352 36.9
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 5.8e-46 189.5 306 40.5
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.5e-44 183.0 283 39.6
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 1.6e-43 181.4 404 32.4
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 2.1e-43 181.0 329 37.1
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.1e-43 181.0 321 38.6
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 2.7e-43 180.6 336 35.7
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 2.7e-43 180.6 337 36.2
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 3.0e-42 177.2 330 37.9
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.7e-42 176.0 330 36.7
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 8.7e-42 175.6 366 35.5
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.9e-41 174.5 133 60.2
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 2.5e-41 174.1 233 48.1
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 3.7e-40 170.2 326 34.0
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 3.4e-38 163.7 245 40.4
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.1e-36 158.7 341 34.3
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.2e-36 157.1 317 36.9
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 7.1e-36 156.0 163 51.5
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.6e-35 154.8 317 36.6
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.3e-34 151.8 111 67.6
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 3.3e-33 147.1 344 36.6
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 3.1e-31 140.6 260 37.7
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 3.1e-31 140.6 260 37.7
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 6.9e-31 139.4 341 32.8
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.6e-30 137.5 373 31.9
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 4.5e-30 136.7 242 36.8
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 7.2e-28 129.4 363 30.9
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.1e-27 127.9 163 52.1
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 2.7e-27 127.5 248 33.9
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 1.5e-25 121.7 139 51.1
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 2.5e-25 120.9 158 46.2
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 1.3e-24 118.6 153 47.1
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 3.7e-24 117.1 157 45.9
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 1.1e-23 115.5 157 45.2
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 9.0e-23 112.5 152 38.8
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 3.4e-22 110.5 252 29.8
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 7.9e-19 99.4 121 41.3
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 9.7e-17 92.4 170 37.1
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 3.7e-16 90.5 105 45.7
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 4.8e-16 90.1 104 44.2
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 6.3e-16 89.7 68 58.8
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 3.6e-11 73.9 126 41.3
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 1.7e-08 65.1 150 30.7
Rhsim04G0168400 Rhododendron simsii HOM05D000018 ORTHO05D008577 2.4e-07 61.2 78 44.9
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 7.0e-07 59.7 65 44.6


User provided reference genes

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