Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G024600 Theobroma cacao HOM05D006424 ORTHO05D007945 2.4e-119 432.2 214 100.0
Thecc.06G024200 Theobroma cacao HOM05D006424 ORTHO05D007945 1.0e-106 390.2 207 93.7
Duzib192G0907 Durio zibethinus HOM05D006424 ORTHO05D007945 1.6e-91 339.7 207 80.2
COL.COLO4_11949 Corchorus olitorius HOM05D006424 ORTHO05D007945 4.3e-89 331.6 207 78.7
Manes.11G056800 Manihot esculenta HOM05D006424 ORTHO05D007945 4.5e-86 321.6 209 76.1
Gohir.D06G192200 Gossypium hirsutum HOM05D006424 ORTHO05D007945 2.9e-85 318.9 210 74.8
Cpa.g.sc10.267 Carica papaya HOM05D006424 ORTHO05D007945 5.5e-84 314.7 208 75.5
Gohir.A06G185600 Gossypium hirsutum HOM05D006424 ORTHO05D007945 7.2e-84 314.3 210 73.8
Manes.04G112700 Manihot esculenta HOM05D006424 ORTHO05D007945 3.9e-82 308.5 205 72.2
Gorai.010G225400 Gossypium raimondii HOM05D006424 ORTHO05D007945 1.5e-81 306.6 175 80.0
Eucgr.F03876 Eucalyptus grandis HOM05D006424 ORTHO05D007945 3.3e-81 305.4 207 71.5
QL05p029818 Quercus lobata HOM05D006424 ORTHO05D007945 5.7e-81 304.7 206 70.9
GSVIVG01017340001 Vitis vinifera HOM05D006424 ORTHO05D007945 2.8e-80 302.4 206 70.9
Atru.chr1.2950 Acer truncatum HOM05D006424 ORTHO05D007945 6.3e-80 301.2 206 69.9
RcHm_v2.0_Chr2g0135411 Rosa chinensis HOM05D006424 ORTHO05D007945 4.5e-78 295.0 209 69.9
Dinv38123 Davidia involucrata HOM05D006424 ORTHO05D007945 5.9e-78 294.7 212 68.4
Prupe.3G087300 Prunus persica HOM05D006424 ORTHO05D007945 5.9e-78 294.7 209 70.8
FAN02G1519 Fragaria x ananassa HOM05D006424 ORTHO05D007945 1.0e-77 293.9 214 68.2
PGR102G1391 Punica granatum HOM05D006424 ORTHO05D007945 2.9e-77 292.4 207 71.0
FAN05G3690 Fragaria x ananassa HOM05D006424 ORTHO05D007945 3.8e-77 292.0 209 68.9
TWI12G0141 Tripterygium wilfordii HOM05D006424 ORTHO05D007945 1.1e-76 290.4 209 70.3
Haze_16559 Corylus avellana HOM05D006424 ORTHO05D007945 2.5e-76 289.3 206 68.0
Ciclev10026222m.g Citrus clementina HOM05D006424 ORTHO05D007945 5.5e-76 288.1 208 66.8
TAR383G1051 Trochodendron aralioides HOM05D006424 ORTHO05D007945 7.2e-76 287.7 206 69.4
Actinidia08796 Actinidia chinensis HOM05D006424 ORTHO05D007945 9.4e-76 287.3 209 67.5
CSS0015595 Camellia sinensis var. sinensis HOM05D006424 ORTHO05D007945 9.4e-76 287.3 210 66.2
Nitab4.5_0009497g0010 Nicotiana tabacum HOM05D006424 ORTHO05D007945 1.2e-75 287.0 196 68.9
Potri.001G204300 Populus trichocarpa HOM05D006424 ORTHO05D007945 1.2e-75 287.0 213 70.0
CANSAT56G3050 Cannabis sativa HOM05D006424 ORTHO05D007945 2.1e-75 286.2 205 65.9
CiPaw.01G248200 Carya illinoinensis HOM05D006424 ORTHO05D007945 2.7e-75 285.8 207 66.7
Ca_20445_v3 Cicer arietinum L. HOM05D006424 ORTHO05D007945 4.7e-75 285.0 210 70.5
PGSC0003DMG402028626 Solanum tuberosum HOM05D006424 ORTHO05D007945 4.7e-75 285.0 203 67.5
HanXRQChr04g0097881 Helianthus annuus HOM05D006424 ORTHO05D007945 6.1e-75 284.6 204 66.7
Phvul.010G156300 Phaseolus vulgaris HOM05D006424 ORTHO05D007945 1.4e-74 283.5 209 67.5
Glyma.07G029900 Glycine max HOM05D006424 ORTHO05D007945 6.7e-74 281.2 209 67.9
Cfa001961 Carpinus fangiana HOM05D006424 ORTHO05D007945 8.8e-74 280.8 206 65.5
FAN14G0356 Fragaria x ananassa HOM05D006424 ORTHO05D007945 1.5e-73 280.0 191 70.2
Hma1.2p1_0042F.1_g025600 Hydrangea macrophylla HOM05D006424 ORTHO05D007945 1.5e-73 280.0 209 66.5
VMungo0331G1912 Vigna mungo HOM05D006424 ORTHO05D007945 1.5e-73 280.0 209 67.0
CARHR090930 Cardamine hirsuta HOM05D006424 ORTHO05D007945 2.6e-73 279.3 204 67.2
MD17G1212100 Malus domestica HOM05D006424 ORTHO05D007945 2.6e-73 279.3 207 65.7
Sabra01G0157400 Salix brachista HOM05D006424 ORTHO05D007945 2.6e-73 279.3 211 67.8
A05p33570 Brassica napus HOM05D006424 ORTHO05D007945 3.3e-73 278.9 206 65.5
ClCG09G002940 Citrullus lanatus HOM05D006424 ORTHO05D007945 3.3e-73 278.9 209 68.4
Lalb_Chr04g0262371 Lupinus albus HOM05D006424 ORTHO05D007945 4.4e-73 278.5 178 71.9
Sopen12g021950 Solanum pennellii HOM05D006424 ORTHO05D007945 4.4e-73 278.5 203 66.5
Actinidia15982 Actinidia chinensis HOM05D006424 ORTHO05D007945 5.7e-73 278.1 209 64.6
BcaB06g25691 Brassica carinata HOM05D006424 ORTHO05D007945 5.7e-73 278.1 206 65.5
BolC5t33801H Brassica oleracea HOM05D006424 ORTHO05D007945 5.7e-73 278.1 206 65.5
Medtr4g010140 Medicago truncatula HOM05D006424 ORTHO05D007945 7.4e-73 277.7 208 67.8
BcaC05g28929 Brassica carinata HOM05D006424 ORTHO05D007945 9.7e-73 277.3 206 65.5
C05p50560 Brassica napus HOM05D006424 ORTHO05D007945 9.7e-73 277.3 206 65.5
Glyma.08G213000 Glycine max HOM05D006424 ORTHO05D007945 9.7e-73 277.3 208 66.8
THA.LOC104810510 Tarenaya hassleriana HOM05D006424 ORTHO05D007945 1.3e-72 276.9 205 65.9
AT3G15840 Arabidopsis thaliana HOM05D006424 ORTHO05D007945 2.2e-72 276.2 206 66.5
A03p39490 Brassica napus HOM05D006424 ORTHO05D007945 2.8e-72 275.8 206 63.1
BraA03t13099Z Brassica rapa HOM05D006424 ORTHO05D007945 2.8e-72 275.8 206 63.1
Solyc12g042770.3 Solanum lycopersicum HOM05D006424 ORTHO05D007945 2.8e-72 275.8 203 65.5
BraA05t22180Z Brassica rapa HOM05D006424 ORTHO05D007945 3.7e-72 275.4 206 65.5
Sed0012965 Sechium edule HOM05D006424 ORTHO05D007945 3.7e-72 275.4 209 66.5
Sed0007474 Sechium edule HOM05D006424 ORTHO05D007945 1.1e-71 273.9 210 65.7
Cc04_g04390 Coffea canephora HOM05D006424 ORTHO05D007945 1.4e-71 273.5 171 71.3
AL3G28500 Arabidopsis lyrata HOM05D006424 ORTHO05D007945 1.8e-71 273.1 205 66.3
CiPaw.02G157300 Carya illinoinensis HOM05D006424 ORTHO05D007945 1.8e-71 273.1 206 66.5
ECA247G2617 Erigeron canadensis HOM05D006424 ORTHO05D007945 1.8e-71 273.1 196 64.8
Lj3g0018478 Lotus japonicus HOM05D006424 ORTHO05D007945 1.8e-71 273.1 209 65.6
Thhalv10022443m.g Eutrema salsugineum HOM05D006424 ORTHO05D007945 2.4e-71 272.7 152 80.3
MELO3C023426.2 Cucumis melo HOM05D006424 ORTHO05D007945 3.1e-71 272.3 208 65.4
BolC3t17067H Brassica oleracea HOM05D006424 ORTHO05D007945 4.1e-71 271.9 206 62.6
Sp3g14150 Schrenkiella parvula HOM05D006424 ORTHO05D007945 5.3e-71 271.6 206 64.1
SalBow2G1302 Salvia bowleyana HOM05D006424 ORTHO05D007945 7.0e-71 271.2 207 63.3
Carub.0003s1558 Capsella rubella HOM05D006424 ORTHO05D007945 1.6e-70 270.0 206 65.5
C03p47890 Brassica napus HOM05D006424 ORTHO05D007945 2.0e-70 269.6 206 62.6
CSS0035863 Camellia sinensis var. sinensis HOM05D006424 ORTHO05D007945 2.6e-70 269.2 176 69.3
Aa31LG8G3030 Aethionema arabicum HOM05D006424 ORTHO05D007945 3.5e-70 268.9 206 64.1
Peaxi162Scf00034g01413 Petunia axillaris HOM05D006424 ORTHO05D007945 3.5e-70 268.9 196 64.8
Lj9A500T81 Lonicera japonica HOM05D006424 ORTHO05D007945 4.5e-70 268.5 170 70.0
TPR.G38617 Trifolium pratense HOM05D001630 ORTHO05D007945 7.7e-70 267.7 209 64.1
Rhsim12G0191200 Rhododendron simsii HOM05D006424 ORTHO05D007945 1.0e-69 267.3 208 65.9
MSTRG.22746 Avicennia marina HOM05D006424 ORTHO05D007945 1.7e-69 266.5 204 63.7
Oeu039429.1 Olea europaea HOM05D006424 ORTHO05D007945 2.9e-69 265.8 168 73.2
Nitab4.5_0003157g0020 Nicotiana tabacum HOM05D006424 ORTHO05D007945 1.1e-68 263.8 192 67.2
Migut.I00764 Erythranthe guttata HOM05D006424 ORTHO05D007945 1.9e-68 263.1 211 60.7
CsaV3_7G032330 Cucumis sativus L. HOM05D006424 ORTHO05D007945 2.5e-68 262.7 211 64.0
Nn2g12084 Nelumbo nucifera HOM05D006424 ORTHO05D007945 1.2e-67 260.4 204 61.8
Lsat_1_v5_gn_1_34401 Lactuca sativa HOM05D006424 ORTHO05D007945 6.1e-67 258.1 237 56.1
BcaC01g03854 Brassica carinata HOM05D006424 ORTHO05D007945 8.0e-67 257.7 206 60.7
Aqoxy7G03662 Aquilegia oxysepala HOM05D006424 ORTHO05D007945 6.7e-66 254.6 205 60.0
PSO210G3245 Papaver somniferum HOM05D006424 ORTHO05D007945 6.7e-66 254.6 205 59.5
arahy.Tifrunner.gnm1.ann1.92ZGJC Arachis hypogaea HOM05D006424 ORTHO05D007945 1.5e-65 253.4 196 65.8
PSO210G5365 Papaver somniferum HOM05D006424 ORTHO05D007945 1.5e-65 253.4 205 59.0
ATR0322G065 Amborella trichopoda HOM05D006424 ORTHO05D007945 2.0e-65 253.1 181 64.1
AUR62016338 Chenopodium quinoa HOM05D006424 ORTHO05D007945 4.4e-65 251.9 175 63.4
Nn8g39504 Nelumbo nucifera HOM05D006424 ORTHO05D007945 4.4e-65 251.9 205 62.0
DCAR_021344 Daucus carota HOM05D006424 ORTHO05D007945 1.7e-64 250.0 188 61.7
MBI04_g29330_MAGBIO Magnolia biondii HOM05D006424 ORTHO05D007945 2.2e-64 249.6 211 60.7
AUR62011520 Chenopodium quinoa HOM05D006424 ORTHO05D007945 3.1e-63 245.7 213 56.3
unitig_27.g24949 Utricularia gibba HOM05D006424 ORTHO05D007945 5.9e-62 241.5 194 60.8
FAN09G3401 Fragaria x ananassa HOM05D006424 ORTHO05D007945 1.3e-61 240.4 216 57.4
FvH4_6g29710 Fragaria vesca HOM05D006424 ORTHO05D007945 1.1e-60 237.3 123 83.7
CDE07G1654 Ceratophyllum demersum HOM05D006424 ORTHO05D007945 1.5e-60 236.9 207 56.5
vmacro16897 Vaccinium macrocarpon HOM05D006424 ORTHO05D007945 7.2e-60 234.6 173 63.6
Ah.01g020600 Amaranthus hybridus HOM05D006424 ORTHO05D007945 1.2e-59 233.8 130 75.4
CAN.G47.13 Capsicum annuum HOM05D006424 ORTHO05D007945 2.3e-58 229.6 130 74.6
SEGI_16074 Sequoiadendron giganteum HOM05D006424 ORTHO05D007945 1.8e-55 219.9 176 58.5
Os03g0586500 Oryza sativa ssp. japonica HOM05D006424 ORTHO05D007945 3.5e-54 215.7 140 65.7
Zm00001eb049190 Zea mays HOM05D006424 ORTHO05D007945 1.0e-53 214.2 192 54.7
Zm00001eb219530 Zea mays HOM05D006424 ORTHO05D007945 2.5e-52 209.5 161 60.9
Psat7g257120 Pisum sativum HOM05D006424 ORTHO05D007945 1.6e-51 206.8 178 61.8
QL05p029868 Quercus lobata HOM05D006424 ORTHO05D007945 7.7e-46 188.0 150 65.3
Pp3c22_2660 Physcomitrium patens HOM05D006424 ORTHO05D007945 1.7e-45 186.8 208 46.6
Mapoly0024s0088 Marchantia polymorpha HOM05D006424 ORTHO05D007945 2.9e-45 186.0 206 47.1
Hund06560 Selenicereus undatus HOM05D006424 ORTHO05D007945 5.0e-45 185.3 148 58.8
EL10Ac9g21901 Beta vulgaris HOM05D006424 ORTHO05D007945 1.5e-44 183.7 110 69.1
arahy.Tifrunner.gnm1.ann1.7R86JN Arachis hypogaea HOM05D006424 ORTHO05D007945 1.2e-41 174.1 210 48.1
Pp3c15_11500 Physcomitrium patens HOM05D006424 ORTHO05D007945 1.2e-41 174.1 189 45.5
SMO331G0083 Selaginella moellendorffii HOM05D006424 ORTHO05D007945 1.2e-41 174.1 133 52.6
CBR_g38381 Chara braunii HOM05D006424 ORTHO05D007945 2.0e-41 173.3 204 44.1
AagrBONN_evm.TU.Sc2ySwM_344.5484 Anthoceros agrestis HOM05D006424 ORTHO05D007945 5.7e-41 171.8 212 42.9
Pp3c9_11540 Physcomitrium patens HOM05D006424 ORTHO05D007945 5.7e-41 171.8 188 44.7
Thecc.K0004600 Theobroma cacao HOM05D006424 ORTHO05D007945 1.2e-35 154.1 69 100.0
QL05p029832 Quercus lobata HOM05D006424 ORTHO05D007945 4.3e-28 129.0 82 70.7
Oeu000425.1 Olea europaea HOM05D006424 ORTHO05D007945 2.3e-26 123.2 148 47.3
arahy.Tifrunner.gnm1.ann1.YP381G Arachis hypogaea HOM05D006424 ORTHO05D007945 1.9e-12 77.0 132 39.4


User provided reference genes

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