Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 2.5e-86 322.0 157 100.0
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 7.3e-86 320.5 157 99.4
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 5.3e-76 287.7 150 95.3
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 3.3e-70 268.5 150 88.7
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 1.3e-66 256.5 146 86.3
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 4.2e-65 251.5 137 90.5
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 5.5e-65 251.1 147 83.0
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 1.6e-64 249.6 140 87.9
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 2.7e-64 248.8 142 85.9
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 2.7e-64 248.8 148 83.1
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.5e-64 248.4 149 81.9
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 7.9e-64 247.3 148 82.4
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 7.9e-64 247.3 148 82.4
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 7.9e-64 247.3 148 82.4
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.3e-63 246.5 147 85.0
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 1.3e-63 246.5 145 83.4
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 1.8e-63 246.1 152 80.3
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 2.3e-63 245.7 143 83.9
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 2.3e-63 245.7 153 81.0
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 3.0e-63 245.4 137 89.1
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 6.7e-63 244.2 143 83.9
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 1.5e-62 243.0 136 87.5
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 1.9e-62 242.7 152 78.9
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 2.5e-62 242.3 144 84.7
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 2.5e-62 242.3 137 86.1
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 3.3e-62 241.9 137 86.1
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 3.3e-62 241.9 149 81.2
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 4.3e-62 241.5 134 89.6
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 5.7e-62 241.1 142 85.2
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 9.7e-62 240.4 144 83.3
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 9.7e-62 240.4 137 83.9
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 1.3e-61 240.0 136 86.0
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.3e-61 240.0 137 83.9
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 1.6e-61 239.6 138 87.0
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 1.6e-61 239.6 137 81.8
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.1e-61 239.2 137 85.4
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 6.3e-61 237.7 145 80.7
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 8.2e-61 237.3 149 77.9
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.1e-60 236.9 137 84.7
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 2.4e-60 235.7 138 86.2
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 3.1e-60 235.3 149 78.5
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 3.1e-60 235.3 137 85.4
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 6.9e-60 234.2 136 82.4
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 9.0e-60 233.8 137 84.7
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 9.0e-60 233.8 142 83.8
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 2.0e-59 232.6 143 80.4
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 3.4e-59 231.9 137 84.7
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 3.4e-59 231.9 137 84.7
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 4.5e-59 231.5 143 79.7
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 4.5e-59 231.5 133 85.0
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 5.9e-59 231.1 137 81.0
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 7.6e-59 230.7 153 75.2
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.0e-58 230.3 135 85.2
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 1.3e-58 229.9 138 84.8
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 1.7e-58 229.6 137 82.5
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 1.7e-58 229.6 139 82.0
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 1.7e-58 229.6 139 82.0
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 1.7e-58 229.6 149 79.9
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 2.2e-58 229.2 137 83.9
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 2.2e-58 229.2 137 82.5
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 2.2e-58 229.2 137 81.8
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 2.2e-58 229.2 137 82.5
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 2.2e-58 229.2 137 82.5
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 2.2e-58 229.2 137 81.8
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 2.2e-58 229.2 137 82.5
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 2.2e-58 229.2 137 82.5
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 2.2e-58 229.2 137 78.8
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 2.2e-58 229.2 137 83.2
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 2.9e-58 228.8 149 75.8
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.8e-58 228.4 136 80.9
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.8e-58 228.4 136 80.9
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 5.0e-58 228.0 137 81.0
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 6.5e-58 227.6 137 80.3
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 6.5e-58 227.6 137 81.0
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 8.5e-58 227.3 137 81.0
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 8.5e-58 227.3 143 76.9
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 8.5e-58 227.3 136 80.9
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.1e-57 226.9 149 77.9
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 1.1e-57 226.9 129 86.0
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.4e-57 226.5 136 79.4
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 3.2e-57 225.3 136 80.9
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 3.2e-57 225.3 137 80.3
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 3.2e-57 225.3 137 80.3
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 3.2e-57 225.3 137 80.3
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 3.2e-57 225.3 137 80.3
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 3.2e-57 225.3 137 80.3
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 4.2e-57 224.9 135 81.5
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 5.5e-57 224.6 137 80.3
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 7.2e-57 224.2 136 79.4
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 9.3e-57 223.8 142 75.4
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 9.3e-57 223.8 143 76.9
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 9.3e-57 223.8 143 76.9
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 9.3e-57 223.8 136 78.7
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 2.1e-56 222.6 137 78.8
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 3.6e-56 221.9 142 75.4
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 4.6e-56 221.5 137 79.6
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 4.6e-56 221.5 128 82.8
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 4.6e-56 221.5 128 82.8
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 1.0e-55 220.3 127 83.5
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 1.3e-55 219.9 126 83.3
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 3.9e-55 218.4 133 80.5
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 5.1e-55 218.0 136 77.2
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 6.7e-55 217.6 137 78.1
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 6.7e-55 217.6 136 78.7
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 6.7e-55 217.6 136 77.9
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.1e-54 216.9 135 81.5
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.1e-54 216.9 144 75.7
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.5e-54 216.5 140 78.6
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 1.9e-54 216.1 128 81.2
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.9e-54 216.1 140 78.6
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.9e-54 216.1 144 75.0
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 2.5e-54 215.7 139 74.8
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 2.5e-54 215.7 132 78.8
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 2.5e-54 215.7 143 75.5
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 3.3e-54 215.3 136 76.5
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 4.3e-54 214.9 134 75.4
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 4.3e-54 214.9 132 78.8
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 4.3e-54 214.9 126 82.5
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 7.4e-54 214.2 136 75.7
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 7.4e-54 214.2 136 77.2
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 9.7e-54 213.8 145 74.5
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 9.7e-54 213.8 145 74.5
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 1.6e-53 213.0 147 71.4
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 2.2e-53 212.6 143 73.4
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 2.2e-53 212.6 143 73.4
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 2.2e-53 212.6 143 73.4
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 2.8e-53 212.2 136 76.5
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 2.8e-53 212.2 127 80.3
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 3.7e-53 211.8 129 78.3
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 4.8e-53 211.5 132 78.8
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.1e-52 210.3 137 75.2
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 4.1e-52 208.4 143 74.8
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 4.1e-52 208.4 136 75.7
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 9.1e-52 207.2 143 71.3
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 4.5e-51 204.9 133 74.4
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 7.7e-51 204.1 129 78.3
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.2e-48 196.8 137 71.5
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 2.7e-48 195.7 133 71.4
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.7e-48 195.7 126 73.8
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 4.6e-48 194.9 133 70.7
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 4.6e-48 194.9 133 70.7
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 1.8e-47 193.0 133 69.9
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 1.8e-47 193.0 133 69.9
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 1.8e-47 193.0 133 69.9
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 8.2e-45 184.1 135 68.9
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 9.1e-44 180.6 136 64.0
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 3.2e-41 172.2 99 85.9
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.2e-39 164.9 101 80.2
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 2.0e-35 152.9 142 54.9
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 3.5e-35 152.1 102 71.6
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 1.3e-34 150.2 86 82.6
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.1e-33 147.1 140 57.9
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 9.7e-30 134.0 101 66.3
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.4e-28 130.2 83 77.1
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 7.2e-25 117.9 149 49.7
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 2.7e-24 115.9 88 62.5
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 5.7e-22 108.2 131 48.9
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 2.3e-07 59.7 40 70.0
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 4.0e-07 58.9 81 44.4
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 9.8e-06 54.3 51 51.0


User provided reference genes

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