Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 2.9e-34 147.9 69 100.0
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 1.6e-29 132.1 68 86.8
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 2.8e-29 131.3 72 87.5
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 1.1e-28 129.4 69 85.5
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.1e-28 129.4 68 86.8
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 1.2e-27 125.9 67 85.1
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 3.4e-27 124.4 60 93.3
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 3.4e-27 124.4 60 93.3
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 3.4e-27 124.4 60 93.3
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 4.4e-27 124.0 73 83.6
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 9.9e-27 122.9 65 84.6
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.3e-26 122.5 61 90.2
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.3e-26 122.5 61 90.2
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 1.3e-26 122.5 65 86.2
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 3.8e-26 120.9 70 81.4
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 4.9e-26 120.6 68 86.8
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 4.9e-26 120.6 67 80.6
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 1.1e-25 119.4 67 80.6
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.4e-25 119.0 61 88.5
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 2.4e-25 118.2 68 79.4
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 2.4e-25 118.2 58 94.8
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 2.4e-25 118.2 58 94.8
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 7.1e-25 116.7 69 78.3
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 9.2e-25 116.3 59 89.8
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 1.2e-24 115.9 69 76.8
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 1.2e-24 115.9 67 77.6
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 1.2e-24 115.9 67 79.1
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 2.7e-24 114.8 61 85.2
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 2.7e-24 114.8 69 75.4
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 4.6e-24 114.0 65 78.5
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 7.8e-24 113.2 62 79.0
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 1.7e-23 112.1 69 73.9
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 2.3e-23 111.7 53 92.5
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 3.0e-23 111.3 65 78.5
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 3.0e-23 111.3 60 81.7
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 3.0e-23 111.3 61 78.7
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 3.9e-23 110.9 59 84.7
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 3.9e-23 110.9 62 79.0
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 5.1e-23 110.5 69 72.5
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 5.1e-23 110.5 69 72.5
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 5.1e-23 110.5 69 76.8
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 5.1e-23 110.5 66 71.2
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 6.6e-23 110.2 57 87.7
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 6.6e-23 110.2 57 87.7
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 1.1e-22 109.4 56 89.3
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 1.1e-22 109.4 67 73.1
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 1.1e-22 109.4 68 73.5
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 1.5e-22 109.0 66 72.7
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 1.5e-22 109.0 61 80.3
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.5e-22 109.0 66 71.2
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 1.5e-22 109.0 67 79.1
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 1.9e-22 108.6 66 71.2
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.9e-22 108.6 53 90.6
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.9e-22 108.6 69 66.7
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 2.5e-22 108.2 65 75.4
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 2.5e-22 108.2 66 71.2
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 3.3e-22 107.8 69 71.0
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 3.3e-22 107.8 67 70.1
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 4.3e-22 107.5 56 83.9
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 4.3e-22 107.5 53 90.6
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 5.6e-22 107.1 54 88.9
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 5.6e-22 107.1 66 69.7
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 5.6e-22 107.1 61 85.2
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 7.3e-22 106.7 68 70.6
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 7.3e-22 106.7 68 70.6
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 7.3e-22 106.7 68 70.6
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 7.3e-22 106.7 63 79.4
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 7.3e-22 106.7 56 85.7
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 7.3e-22 106.7 64 75.0
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 9.6e-22 106.3 67 73.1
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 9.6e-22 106.3 67 73.1
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 9.6e-22 106.3 67 73.1
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 9.6e-22 106.3 67 73.1
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 9.6e-22 106.3 67 73.1
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 9.6e-22 106.3 69 73.9
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 9.6e-22 106.3 67 73.1
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 9.6e-22 106.3 66 68.2
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 1.2e-21 105.9 59 79.7
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.6e-21 105.5 67 71.6
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 2.1e-21 105.1 66 71.2
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 2.1e-21 105.1 68 69.1
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 2.8e-21 104.8 65 73.8
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 2.8e-21 104.8 65 70.8
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 2.8e-21 104.8 51 92.2
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 2.8e-21 104.8 71 73.2
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 2.8e-21 104.8 57 84.2
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 3.6e-21 104.4 56 80.4
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.6e-21 104.4 72 73.6
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 6.2e-21 103.6 58 82.8
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 6.2e-21 103.6 58 82.8
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 6.2e-21 103.6 72 72.2
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 6.2e-21 103.6 72 72.2
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 8.1e-21 103.2 67 68.7
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 8.1e-21 103.2 72 70.8
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 8.1e-21 103.2 65 76.9
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 8.1e-21 103.2 72 72.2
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 1.1e-20 102.8 58 77.6
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 1.4e-20 102.4 63 74.6
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 1.4e-20 102.4 63 74.6
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 2.4e-20 101.7 69 71.0
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 8.9e-20 99.8 49 91.8
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 2.6e-19 98.2 65 72.3
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 3.4e-19 97.8 61 72.1
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 7.6e-19 96.7 47 93.6
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 2.9e-18 94.7 59 72.9
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 3.8e-18 94.4 71 66.2
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.1e-17 92.8 71 66.2
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 3.2e-17 91.3 46 87.0
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 3.2e-17 91.3 66 62.1
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 1.6e-16 89.0 48 79.2
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.1e-16 88.6 47 85.1
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 1.3e-15 85.9 56 67.9
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 5.1e-15 84.0 55 67.3
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 1.1e-14 82.8 59 62.7
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 2.5e-14 81.6 47 76.6
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 3.3e-14 81.3 54 64.8
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 3.3e-14 81.3 50 68.0
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 9.6e-14 79.7 49 67.3
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.1e-12 74.7 54 59.3
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 3.1e-12 74.7 56 57.1
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 4.0e-12 74.3 45 71.1
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 3.4e-11 71.2 37 81.1
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 4.9e-10 67.4 30 93.3
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 5.4e-09 63.9 64 51.6
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 5.4e-09 63.9 64 51.6
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 1.2e-08 62.8 56 51.8
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 2.7e-08 61.6 39 69.2
Zm00001eb341140 Zea mays HOM05D005857 ORTHO05D007193 7.9e-08 60.1 49 59.2
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 1.1e-06 56.2 59 44.1
Nn3g18517 Nelumbo nucifera HOM05D005857 ORTHO05D007193 1.9e-06 55.5 43 67.4


User provided reference genes

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