Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G015800 Theobroma cacao HOM05D007092 ORTHO05D008947 2.4e-206 721.8 339 100.0
COL.COLO4_22872 Corchorus olitorius HOM05D007092 ORTHO05D008947 5.7e-136 488.0 305 77.0
Duzib160G0445 Durio zibethinus HOM05D007092 ORTHO05D008947 1.2e-125 453.8 257 82.9
Ciclev10026125m.g Citrus clementina HOM05D007092 ORTHO05D008947 3.7e-119 432.2 253 76.7
QL05p083231 Quercus lobata HOM05D007092 ORTHO05D008947 8.3e-119 431.0 269 75.1
Dinv37796 Davidia involucrata HOM05D007092 ORTHO05D008947 3.2e-118 429.1 335 63.9
Atru.chr1.2779 Acer truncatum HOM05D007092 ORTHO05D008947 2.1e-117 426.4 255 75.3
Medtr4g006030 Medicago truncatula HOM05D007092 ORTHO05D008947 5.6e-115 418.3 312 63.8
Prupe.3G167100 Prunus persica HOM05D007092 ORTHO05D008947 1.2e-114 417.2 279 70.3
MD09G1158700 Malus domestica HOM05D007092 ORTHO05D008947 2.1e-114 416.4 306 64.4
Ca_20954_v3 Cicer arietinum L. HOM05D007092 ORTHO05D008947 3.6e-114 415.6 290 65.9
TPR.G38753 Trifolium pratense HOM05D007092 ORTHO05D008947 3.1e-113 412.5 256 72.7
RcHm_v2.0_Chr2g0150121 Rosa chinensis HOM05D007092 ORTHO05D008947 4.0e-113 412.1 292 66.8
GSVIVG01016136001 Vitis vinifera HOM05D007092 ORTHO05D008947 8.9e-113 411.0 280 67.5
Gohir.D10G007300 Gossypium hirsutum HOM05D007092 ORTHO05D008947 3.4e-112 409.1 331 63.7
FvH4_6g37290 Fragaria vesca HOM05D007092 ORTHO05D008947 4.4e-112 408.7 277 67.5
Gorai.011G008000 Gossypium raimondii HOM05D007092 ORTHO05D008947 7.5e-112 407.9 331 63.4
Gohir.A10G007400 Gossypium hirsutum HOM05D007092 ORTHO05D008947 9.9e-112 407.5 332 63.3
Phvul.008G255700 Phaseolus vulgaris HOM05D007092 ORTHO05D008947 1.7e-111 406.8 255 70.2
Eucgr.F04011 Eucalyptus grandis HOM05D007092 ORTHO05D008947 3.7e-111 405.6 266 70.3
Lj3g0013116 Lotus japonicus HOM05D007092 ORTHO05D008947 4.9e-111 405.2 249 73.1
PGR102G2093 Punica granatum HOM05D007092 ORTHO05D008947 1.4e-110 403.7 334 59.0
VMungo0647G0167 Vigna mungo HOM05D007092 ORTHO05D008947 1.9e-110 403.3 255 70.2
Glyma.07G003900 Glycine max HOM05D007092 ORTHO05D008947 2.4e-110 402.9 255 70.6
CANSAT01G0482 Cannabis sativa HOM05D007092 ORTHO05D008947 1.2e-109 400.6 275 65.5
CSS0038887 Camellia sinensis var. sinensis HOM05D007092 ORTHO05D008947 2.1e-109 399.8 270 68.1
Lalb_Chr04g0264731 Lupinus albus HOM05D007092 ORTHO05D008947 2.1e-109 399.8 289 65.1
Nn2g12583 Nelumbo nucifera HOM05D007092 ORTHO05D008947 1.7e-108 396.7 265 68.3
Hma1.2p1_1104F.1_g257360 Hydrangea macrophylla HOM05D007092 ORTHO05D008947 3.0e-108 396.0 270 67.0
arahy.Tifrunner.gnm1.ann1.U4SUAB Arachis hypogaea HOM05D007092 ORTHO05D008947 5.1e-108 395.2 261 67.4
CsaV3_7G033820 Cucumis sativus L. HOM05D007092 ORTHO05D008947 8.6e-108 394.4 321 59.8
Manes.01G181400 Manihot esculenta HOM05D007092 ORTHO05D008947 1.9e-107 393.3 271 68.6
TAR383G0306 Trochodendron aralioides HOM05D007092 ORTHO05D008947 3.3e-107 392.5 270 68.9
FAN02G1258 Fragaria x ananassa HOM05D007092 ORTHO05D008947 9.5e-107 391.0 315 60.6
arahy.Tifrunner.gnm1.ann1.2I6Q5Y Arachis hypogaea HOM05D007092 ORTHO05D008947 1.6e-106 390.2 261 66.7
Sp5g28050 Schrenkiella parvula HOM05D007092 ORTHO05D008947 1.6e-106 390.2 266 67.7
Nitab4.5_0002661g0010 Nicotiana tabacum HOM05D007092 ORTHO05D008947 1.8e-105 386.7 252 67.5
Actinidia21869 Actinidia chinensis HOM05D007092 ORTHO05D008947 2.4e-105 386.3 326 59.8
PGSC0003DMG400026517 Solanum tuberosum HOM05D007092 ORTHO05D008947 4.0e-105 385.6 256 66.8
Nitab4.5_0008628g0030 Nicotiana tabacum HOM05D007092 ORTHO05D008947 1.2e-104 384.0 254 66.5
Carub.0002s1986 Capsella rubella HOM05D007092 ORTHO05D008947 2.0e-104 383.3 265 65.7
Cc04_g00380 Coffea canephora HOM05D007092 ORTHO05D008947 2.0e-104 383.3 254 69.7
Sopen06g022680 Solanum pennellii HOM05D007092 ORTHO05D008947 2.0e-104 383.3 256 66.0
AT1G73090 Arabidopsis thaliana HOM05D007092 ORTHO05D008947 2.6e-104 382.9 267 64.8
PSO063G1240 Papaver somniferum HOM05D007092 ORTHO05D008947 2.6e-104 382.9 293 62.5
ClCG09G001510 Citrullus lanatus HOM05D007092 ORTHO05D008947 3.4e-104 382.5 340 57.6
Solyc06g063230.3 Solanum lycopersicum HOM05D007092 ORTHO05D008947 5.8e-104 381.7 256 65.6
Aa31LG4G3360 Aethionema arabicum HOM05D007092 ORTHO05D008947 1.7e-103 380.2 252 65.1
AL2G32840 Arabidopsis lyrata HOM05D007092 ORTHO05D008947 4.9e-103 378.6 254 66.1
Thhalv10018923m.g Eutrema salsugineum HOM05D007092 ORTHO05D008947 1.9e-102 376.7 265 64.5
Oeu049655.1 Olea europaea HOM05D007092 ORTHO05D008947 1.9e-102 376.7 274 63.5
Peaxi162Scf00207g01537 Petunia axillaris HOM05D007092 ORTHO05D008947 1.9e-102 376.7 275 61.8
A02p18440 Brassica napus HOM05D007092 ORTHO05D008947 6.0e-101 371.7 304 59.5
BraA02t06883Z Brassica rapa HOM05D007092 ORTHO05D008947 6.0e-101 371.7 304 59.5
C02p30520 Brassica napus HOM05D007092 ORTHO05D008947 1.0e-100 370.9 256 66.8
HanXRQChr10g0311491 Helianthus annuus HOM05D007092 ORTHO05D008947 1.7e-100 370.2 250 65.2
Sed0004999 Sechium edule HOM05D007092 ORTHO05D008947 1.7e-100 370.2 233 72.5
CARHR066060 Cardamine hirsuta HOM05D007092 ORTHO05D008947 2.3e-100 369.8 265 63.8
BolC2t09103H Brassica oleracea HOM05D007092 ORTHO05D008947 5.1e-100 368.6 254 66.9
MBI14_g30703_MAGBIO Magnolia biondii HOM05D007092 ORTHO05D008947 5.1e-100 368.6 311 58.5
Aqoxy7G03199 Aquilegia oxysepala HOM05D007092 ORTHO05D008947 8.7e-100 367.9 282 63.8
Haze_15817 Corylus avellana HOM05D007092 ORTHO05D008947 8.7e-100 367.9 276 64.9
Sc12g0010950 Simmondsia chinensis HOM05D007092 ORTHO05D008947 8.7e-100 367.9 268 63.4
Lsat_1_v5_gn_5_137421 Lactuca sativa HOM05D007092 ORTHO05D008947 2.5e-99 366.3 254 61.8
ECA234G1665 Erigeron canadensis HOM05D007092 ORTHO05D008947 1.2e-96 357.5 277 58.1
ATR0580G293 Amborella trichopoda HOM05D007092 ORTHO05D008947 9.9e-96 354.4 253 64.0
Potri.010G250100 Populus trichocarpa HOM05D007092 ORTHO05D008947 2.9e-95 352.8 301 58.5
Sabra10G0194500 Salix brachista HOM05D007092 ORTHO05D008947 3.2e-94 349.4 302 58.6
Migut.I01177 Erythranthe guttata HOM05D007092 ORTHO05D008947 9.3e-94 347.8 252 62.7
SalBow6G0042 Salvia bowleyana HOM05D007092 ORTHO05D008947 1.6e-93 347.1 251 61.0
EL10Ac7g18225 Beta vulgaris HOM05D007092 ORTHO05D008947 7.8e-93 344.7 267 58.4
AUR62025584 Chenopodium quinoa HOM05D007092 ORTHO05D008947 2.5e-91 339.7 294 54.8
THA.LOC104823333 Tarenaya hassleriana HOM05D007092 ORTHO05D008947 1.6e-90 337.0 246 63.0
MELO3C024294.2 Cucumis melo HOM05D007092 ORTHO05D008947 1.8e-89 333.6 292 57.2
Lj6C21G9 Lonicera japonica HOM05D007092 ORTHO05D008947 2.8e-82 309.7 265 55.8
HPP92_017449 Vanilla planifolia HOM05D007092 ORTHO05D008947 6.2e-82 308.5 241 58.9
arahy.Tifrunner.gnm1.ann1.65RD4S Arachis hypogaea HOM05D007092 ORTHO05D008947 1.4e-81 307.4 204 68.6
Hund18612 Selenicereus undatus HOM05D007092 ORTHO05D008947 3.1e-81 306.2 273 54.6
unitig_748.g7475 Utricularia gibba HOM05D007092 ORTHO05D008947 5.3e-81 305.4 254 58.7
AUR62001368 Chenopodium quinoa HOM05D007092 ORTHO05D008947 1.6e-74 283.9 269 50.6
CDE07G2035 Ceratophyllum demersum HOM05D007092 ORTHO05D008947 3.7e-74 282.7 271 52.4
Lj6C3G1 Lonicera japonica HOM05D000076 ORTHO05D001279 6.7e-68 261.9 238 53.8
SGA_v2.0_scaffold122G33289 Striga asiatica HOM05D002895 ORTHO05D003286 8.7e-68 261.5 220 56.4
Mapoly0073s0046 Marchantia polymorpha HOM05D007092 ORTHO05D008947 4.6e-61 239.2 264 45.5
Cfa021192 Carpinus fangiana HOM05D007092 ORTHO05D008947 1.5e-59 234.2 137 75.9
AagrBONN_evm.TU.Sc2ySwM_344.2112 Anthoceros agrestis HOM05D007092 ORTHO05D008947 1.8e-57 227.3 248 42.3
Pp3c13_10570 Physcomitrium patens HOM05D007092 ORTHO05D008947 5.5e-54 215.7 256 41.0
Hund18613 Selenicereus undatus HOM05D007092 ORTHO05D008947 7.2e-54 215.3 180 55.0
Psat7g263560 Pisum sativum HOM05D007092 ORTHO05D008947 3.6e-53 213.0 144 66.0
FAN09G2007 Fragaria x ananassa HOM05D007092 ORTHO05D008947 1.1e-46 191.4 143 64.3
SMO230G0107 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 3.2e-46 189.9 255 38.8
arahy.Tifrunner.gnm1.ann1.NXC5E0 Arachis hypogaea HOM05D007092 ORTHO05D008947 5.2e-44 182.6 106 75.5
C02p30540 Brassica napus HOM05D007092 ORTHO05D008947 6.5e-39 165.6 103 70.9
RcHm_v2.0_Chr1g0381181 Rosa chinensis HOM05D007092 ORTHO05D008947 5.7e-35 152.5 161 50.3
arahy.Tifrunner.gnm1.ann1.DEI7NY Arachis hypogaea HOM05D007092 ORTHO05D008947 7.5e-35 152.1 81 80.2
Glyma.08G222700 Glycine max HOM05D007092 ORTHO05D008947 2.0e-32 144.1 80 76.2
SMO336G0036 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 1.1e-30 138.3 287 30.7
SEGI_20536 Sequoiadendron giganteum HOM05D007092 ORTHO05D008947 3.5e-24 116.7 83 60.2
Lj6A3T47 Lonicera japonica HOM05D007092 ORTHO05D008947 6.6e-23 112.5 65 73.8
arahy.Tifrunner.gnm1.ann1.BLVE7G Arachis hypogaea HOM05D007092 ORTHO05D008947 5.2e-20 102.8 51 84.3
arahy.Tifrunner.gnm1.ann1.LQFB73 Arachis hypogaea HOM05D007092 ORTHO05D008947 5.2e-20 102.8 51 84.3
Cpa.g.sc1009.2 Carica papaya HOM05D007092 ORTHO05D008947 6.8e-20 102.4 82 59.8
arahy.Tifrunner.gnm1.ann1.QYJ7WZ Arachis hypogaea HOM05D007092 ORTHO05D008947 3.2e-17 93.6 73 64.4
arahy.Tifrunner.gnm1.ann1.TPQB3Q Arachis hypogaea HOM05D007092 ORTHO05D008947 3.2e-17 93.6 73 64.4
arahy.Tifrunner.gnm1.ann1.KBSP04 Arachis hypogaea HOM05D002221 ORTHO05D002626 1.8e-12 77.8 58 62.1
arahy.Tifrunner.gnm1.ann1.R6H1XR Arachis hypogaea HOM05D002221 ORTHO05D002626 1.8e-12 77.8 58 62.1
BcaC07g40307 Brassica carinata HOM05D007092 ORTHO05D008947 1.8e-12 77.8 60 58.3
Actinidia38794 Actinidia chinensis HOM05D007092 ORTHO05D008947 1.2e-11 75.1 54 63.0
BcaB05g22026 Brassica carinata HOM05D007092 ORTHO05D008947 7.5e-11 72.4 62 51.6
arahy.Tifrunner.gnm1.ann1.AT2CXE Arachis hypogaea HOM05D007092 ORTHO05D008947 6.0e-08 62.8 43 60.5
Cpa.g.sc3948.1 Carica papaya HOM05D007092 ORTHO05D008947 7.8e-08 62.4 32 81.2
Actinidia21637 Actinidia chinensis HOM05D007092 ORTHO05D008947 8.6e-07 58.9 112 35.7
SEGI_38624 Sequoiadendron giganteum HOM05D007092 ORTHO05D050975 1.5e-06 58.2 46 52.2
SEGI_02665 Sequoiadendron giganteum HOM05D007092 ORTHO05D050975 1.9e-06 57.8 66 45.5
BcaB04g17422 Brassica carinata HOM05D007092 ORTHO05D008947 4.3e-06 56.6 46 56.5


User provided reference genes

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