Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 4.2e-86 321.2 155 100.0
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 6.4e-66 254.2 123 97.6
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 7.8e-64 247.3 141 85.1
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 1.0e-47 193.7 95 96.8
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.0e-47 193.7 95 96.8
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 1.7e-47 193.0 140 70.7
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 2.3e-47 192.6 136 75.0
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.6e-45 186.4 139 73.4
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 1.6e-45 186.4 139 73.4
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.1e-44 183.7 139 71.2
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 1.1e-33 147.1 97 72.2
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 1.6e-32 143.3 95 72.6
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 7.9e-32 141.0 95 71.6
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 7.9e-32 141.0 125 61.6
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 3.0e-31 139.0 95 70.5
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 3.0e-31 139.0 96 70.8
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 3.0e-31 139.0 99 70.7
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 3.9e-31 138.7 109 61.5
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 6.7e-31 137.9 95 69.5
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 6.7e-31 137.9 95 69.5
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 6.7e-31 137.9 95 69.5
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 6.7e-31 137.9 97 67.0
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 6.7e-31 137.9 95 68.4
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 1.1e-30 137.1 96 68.8
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 1.5e-30 136.7 95 69.5
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 1.5e-30 136.7 95 69.5
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 1.5e-30 136.7 95 69.5
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 1.5e-30 136.7 128 61.7
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 1.9e-30 136.3 128 56.2
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 1.9e-30 136.3 95 69.5
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 3.3e-30 135.6 95 69.5
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 3.3e-30 135.6 95 69.5
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 3.3e-30 135.6 97 63.9
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 4.3e-30 135.2 112 60.7
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 5.6e-30 134.8 95 65.3
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 7.4e-30 134.4 117 62.4
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 7.4e-30 134.4 112 60.7
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 9.6e-30 134.0 117 60.7
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 2.1e-29 132.9 95 68.4
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 2.1e-29 132.9 110 62.7
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 3.7e-29 132.1 95 65.3
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 3.7e-29 132.1 95 68.4
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 3.7e-29 132.1 104 64.4
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 4.8e-29 131.7 95 67.4
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 4.8e-29 131.7 95 67.4
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 4.8e-29 131.7 95 67.4
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 4.8e-29 131.7 112 60.7
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 8.1e-29 131.0 95 66.3
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 1.4e-28 130.2 95 65.3
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 1.8e-28 129.8 117 59.8
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.8e-28 129.8 95 65.3
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 1.8e-28 129.8 95 63.2
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.4e-28 129.4 96 66.7
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 4.0e-28 128.6 102 60.8
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 5.3e-28 128.3 97 62.9
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 5.3e-28 128.3 95 64.2
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 1.2e-27 127.1 95 62.1
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 1.2e-27 127.1 123 53.7
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 1.5e-27 126.7 99 63.6
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 3.4e-27 125.6 104 59.6
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 3.4e-27 125.6 95 62.1
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 3.4e-27 125.6 95 61.1
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 4.5e-27 125.2 101 62.4
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 5.8e-27 124.8 95 61.1
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.0e-26 124.0 95 61.1
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 1.3e-26 123.6 95 61.1
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 1.3e-26 123.6 98 60.2
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 1.7e-26 123.2 102 61.8
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 1.7e-26 123.2 95 63.2
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 2.9e-26 122.5 92 63.0
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 3.8e-26 122.1 95 66.3
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 4.9e-26 121.7 95 60.0
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 6.5e-26 121.3 111 57.7
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 8.4e-26 120.9 95 63.2
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 8.4e-26 120.9 111 55.9
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.9e-25 119.8 108 59.3
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 3.2e-25 119.0 107 56.1
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 3.2e-25 119.0 105 54.3
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 3.2e-25 119.0 108 54.6
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 4.2e-25 118.6 97 60.8
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 4.2e-25 118.6 97 60.8
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 4.2e-25 118.6 108 58.3
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 5.5e-25 118.2 95 62.1
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 5.5e-25 118.2 98 62.2
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 9.3e-25 117.5 95 60.0
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 1.2e-24 117.1 99 59.6
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.2e-24 117.1 95 57.9
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.2e-24 117.1 95 57.9
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.6e-24 116.7 96 61.5
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 4.6e-24 115.2 105 56.2
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 4.6e-24 115.2 108 56.5
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 1.3e-23 113.6 96 57.3
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 1.3e-23 113.6 96 57.3
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 2.3e-23 112.8 95 61.1
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 3.9e-23 112.1 95 58.9
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 3.9e-23 112.1 77 70.1
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 6.7e-23 111.3 97 59.8
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 6.7e-23 111.3 124 48.4
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 8.7e-23 110.9 111 52.3
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 3.3e-22 109.0 97 56.7
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 3.3e-22 109.0 95 55.8
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 3.3e-22 109.0 106 55.7
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 5.7e-22 108.2 102 53.9
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 2.1e-21 106.3 100 54.0
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 2.1e-21 106.3 102 53.9
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 2.8e-21 105.9 87 58.6
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 1.1e-20 104.0 67 73.1
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 3.1e-20 102.4 77 62.3
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 2.9e-18 95.9 95 53.7
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 1.1e-17 94.0 122 42.6
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 4.2e-17 92.0 100 48.0
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 4.2e-17 92.0 90 52.2
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 7.1e-17 91.3 104 47.1
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 7.1e-17 91.3 118 42.4
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 3.0e-15 85.9 95 44.2
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 3.9e-15 85.5 60 65.0
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 8.7e-15 84.3 99 47.5
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 1.3e-13 80.5 100 45.0
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 5.0e-10 68.6 101 33.7
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 2.5e-09 66.2 68 47.1
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 3.2e-09 65.9 80 46.2
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 9.4e-09 64.3 57 50.9
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 7.9e-08 61.2 49 61.2
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 5.7e-06 55.1 80 33.8
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 5.7e-06 55.1 108 35.2


User provided reference genes

Program Settings