Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 6.9e-162 573.9 296 100.0
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 3.3e-148 528.5 297 91.6
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.7e-147 526.2 297 90.6
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.7e-147 526.2 297 90.9
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 1.2e-145 520.0 298 91.3
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 1.4e-138 496.5 298 83.6
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 2.7e-137 492.3 301 84.1
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 1.3e-136 490.0 297 84.2
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 5.0e-136 488.0 297 83.2
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 3.2e-135 485.3 295 85.1
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 3.2e-135 485.3 298 83.6
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 1.2e-134 483.4 296 83.1
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 1.2e-134 483.4 296 81.4
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.6e-134 483.0 297 82.2
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.7e-134 482.3 297 81.5
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 3.6e-134 481.9 297 83.2
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 4.7e-134 481.5 297 82.8
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 6.1e-134 481.1 294 83.7
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 2.3e-133 479.2 297 83.2
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 2.3e-133 479.2 297 82.8
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 5.2e-133 478.0 297 81.5
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 6.8e-133 477.6 305 81.3
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 8.8e-133 477.2 295 82.0
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 1.2e-132 476.9 296 82.1
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 1.5e-132 476.5 296 82.4
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 2.0e-132 476.1 296 83.1
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 2.6e-132 475.7 305 81.0
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 3.4e-132 475.3 294 82.7
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 5.7e-132 474.6 296 80.7
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 1.3e-131 473.4 297 79.8
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 2.2e-131 472.6 297 81.1
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 2.8e-131 472.2 293 80.2
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 2.8e-131 472.2 293 80.2
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 4.9e-131 471.5 297 79.8
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 1.4e-130 469.9 296 81.1
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 1.8e-130 469.5 297 80.8
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 7.0e-130 467.6 296 80.1
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 9.2e-130 467.2 296 80.1
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 1.2e-129 466.8 296 79.4
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 2.0e-129 466.1 297 78.1
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 3.5e-129 465.3 298 78.9
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 3.5e-129 465.3 298 78.9
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 4.5e-129 464.9 296 79.1
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 4.5e-129 464.9 250 93.2
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 4.5e-129 464.9 298 79.2
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 5.9e-129 464.5 297 77.8
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 7.7e-129 464.2 297 77.8
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 1.0e-128 463.8 292 79.8
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 1.3e-128 463.4 296 79.7
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 2.9e-128 462.2 341 72.1
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 1.1e-127 460.3 297 80.8
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 2.5e-127 459.1 297 78.1
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 4.3e-127 458.4 297 76.4
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 1.2e-126 456.8 297 77.8
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 1.6e-126 456.4 298 79.9
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 3.6e-126 455.3 297 77.8
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 6.1e-126 454.5 297 79.1
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 6.1e-126 454.5 297 79.8
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 8.0e-126 454.1 294 77.9
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 1.0e-125 453.8 294 77.6
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.4e-125 453.4 297 78.8
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.4e-125 453.4 315 74.0
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.8e-125 453.0 297 77.4
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.8e-125 453.0 315 73.7
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 4.0e-125 451.8 297 77.4
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 4.0e-125 451.8 299 75.9
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 8.9e-125 450.7 297 75.8
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 1.2e-124 450.3 292 77.4
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 1.2e-124 450.3 297 76.8
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 1.5e-124 449.9 294 77.2
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 2.0e-124 449.5 314 72.0
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 4.4e-124 448.4 295 76.3
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 5.7e-124 448.0 294 76.5
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 7.5e-124 447.6 293 76.1
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 4.9e-123 444.9 294 77.2
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 6.4e-123 444.5 294 76.5
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 8.3e-123 444.1 282 80.5
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 8.3e-123 444.1 282 78.4
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 2.4e-122 442.6 294 76.2
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 3.2e-122 442.2 295 74.6
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 7.0e-122 441.0 294 75.5
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 9.2e-122 440.7 294 75.9
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 9.2e-122 440.7 294 75.9
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 9.2e-122 440.7 294 76.5
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 1.2e-121 440.3 297 75.1
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 2.7e-121 439.1 294 74.8
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 3.5e-121 438.7 294 75.2
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 5.9e-121 438.0 320 74.1
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 5.9e-121 438.0 295 76.9
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 5.9e-121 438.0 298 74.2
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 7.8e-121 437.6 294 75.2
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 1.0e-120 437.2 297 73.7
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.0e-120 437.2 294 75.9
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.3e-120 436.0 297 73.4
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 2.3e-120 436.0 296 74.7
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 3.0e-120 435.6 277 81.2
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 1.1e-119 433.7 294 74.8
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 1.9e-119 433.0 297 75.1
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 3.6e-118 428.7 298 73.8
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 4.7e-118 428.3 297 73.4
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 1.0e-117 427.2 298 73.2
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 3.1e-117 425.6 297 73.1
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 6.8e-117 424.5 281 76.5
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 8.9e-117 424.1 269 79.2
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 1.5e-116 423.3 289 73.7
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 2.6e-116 422.5 296 73.3
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 7.0e-114 414.5 294 72.8
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 9.2e-114 414.1 296 70.6
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 1.3e-104 383.6 297 70.7
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 1.3e-104 383.6 296 67.2
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 1.4e-101 373.6 296 64.9
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 8.9e-101 370.9 226 82.3
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 4.3e-95 352.1 290 58.6
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 1.3e-91 340.5 293 58.4
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 2.2e-91 339.7 222 77.9
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 4.9e-91 338.6 279 63.8
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.4e-90 336.3 293 58.4
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 4.2e-90 335.5 293 58.4
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 3.5e-89 332.4 223 78.0
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 6.0e-89 331.6 233 70.8
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 1.6e-86 323.6 222 73.9
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 2.1e-86 323.2 289 57.8
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 3.4e-84 315.8 282 62.1
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 7.6e-84 314.7 262 58.8
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 8.4e-83 311.2 295 54.6
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 1.4e-82 310.5 176 90.3
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 1.9e-79 300.1 220 67.3
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 6.0e-73 278.5 252 59.5
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 6.0e-73 278.5 256 54.7
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 3.7e-70 269.2 215 68.8
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 4.2e-66 255.8 177 72.3
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 1.6e-62 243.8 150 81.3
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 2.1e-57 226.9 165 66.7
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 8.7e-56 221.5 149 73.8
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 5.7e-55 218.8 143 70.6
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.5e-52 210.7 135 78.5
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 1.7e-46 190.7 265 38.5
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 8.2e-46 188.3 181 58.0
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 5.9e-44 182.2 148 62.8
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 5.7e-39 165.6 105 78.1
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.9e-34 150.6 106 73.6
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 2.1e-33 147.1 132 60.6
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 1.4e-32 144.4 99 68.7
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 4.0e-32 142.9 308 33.1
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 2.1e-25 120.6 270 29.6
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 9.8e-23 111.7 116 53.4
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 9.8e-23 111.7 81 70.4
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 2.4e-21 107.1 65 83.1
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 1.2e-20 104.8 128 48.4
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 1.8e-16 90.9 116 45.7
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 4.4e-15 86.3 116 44.0
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 1.8e-13 80.9 91 50.5
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 1.6e-09 67.8 45 68.9
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 2.3e-08 63.9 39 76.9
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 1.2e-07 61.6 60 51.7
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 4.4e-07 59.7 55 54.5
VMungo0251G3417 Vigna mungo HOM05D004415 ORTHO05D005198 2.2e-06 57.4 53 54.7
GSVIVG01005645001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.2e-06 57.4 55 52.7
GSVIVG01032305001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.2e-06 57.4 55 52.7


User provided reference genes

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